Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 AL133373.1-201ENST00000497098 94 ntBASIC1.38□□□□□ -2.19
HOXD9P28356 CYP3A52P-201ENST00000563326 91 ntBASIC1.38□□□□□ -2.19
HOXD9P28356 MIR3613-201ENST00000579844 87 ntBASIC1.38□□□□□ -2.19
HOXD9P28356 AL157834.3-201ENST00000615543 103 ntBASIC1.38□□□□□ -2.19
HOXD9P28356 AL353770.2-201ENST00000620024 78 ntBASIC1.38□□□□□ -2.19
HOXD9P28356 AL162726.3-218ENST00000636401 95 ntBASIC1.38□□□□□ -2.19
HOXD9P28356 RNY1P10-201ENST00000363268 113 ntBASIC1.37□□□□□ -2.19
HOXD9P28356 SNORD38B-201ENST00000384690 67 ntBASIC1.37□□□□□ -2.19
HOXD9P28356 MIR1912-201ENST00000410389 80 ntBASIC1.37□□□□□ -2.19
HOXD9P28356 RNU6-554P-201ENST00000410466 106 ntBASIC1.37□□□□□ -2.19
HOXD9P28356 RPL30P7-201ENST00000479312 323 ntBASIC1.37□□□□□ -2.19
HOXD9P28356 MIR3660-201ENST00000584845 100 ntBASIC1.37□□□□□ -2.19
HOXD9P28356 PRELID3BP2-201ENST00000605362 201 ntBASIC1.37□□□□□ -2.19
HOXD9P28356 SNORD38B-202ENST00000625943 69 ntBASIC1.37□□□□□ -2.19
HOXD9P28356 RNU6-363P-201ENST00000362895 105 ntBASIC1.36□□□□□ -2.19
HOXD9P28356 Y_RNA.163-201ENST00000363702 113 ntBASIC1.36□□□□□ -2.19
HOXD9P28356 RNU6-392P-201ENST00000364926 101 ntBASIC1.36□□□□□ -2.19
HOXD9P28356 RNU6-997P-201ENST00000384725 107 ntBASIC1.36□□□□□ -2.19
HOXD9P28356 MIR1302-5-201ENST00000408164 150 ntBASIC1.36□□□□□ -2.19
HOXD9P28356 AL031737.1-201ENST00000450125 223 ntBASIC1.36□□□□□ -2.19
HOXD9P28356 RPL39P39-201ENST00000455840 151 ntBASIC1.36□□□□□ -2.19
HOXD9P28356 RNU7-35P-201ENST00000517174 62 ntBASIC1.36□□□□□ -2.19
HOXD9P28356 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.36□□□□□ -2.19
HOXD9P28356 MIR3664-201ENST00000579074 99 ntBASIC1.36□□□□□ -2.19
HOXD9P28356 Y_RNA.773-201ENST00000607168 90 ntBASIC1.36□□□□□ -2.19
HOXD9P28356 uc_338.28-201ENST00000612082 187 ntBASIC1.36□□□□□ -2.19
HOXD9P28356 SNORD77B-201ENST00000391112 67 ntBASIC1.35□□□□□ -2.19
HOXD9P28356 AC244023.1-201ENST00000426884 112 ntBASIC1.35□□□□□ -2.19
HOXD9P28356 AC245047.7-201ENST00000440265 293 ntBASIC1.35□□□□□ -2.19
HOXD9P28356 RNU11-2P-201ENST00000516898 142 ntBASIC1.35□□□□□ -2.19
HOXD9P28356 AC068338.1-201ENST00000565567 176 ntBASIC1.35□□□□□ -2.19
HOXD9P28356 AC242498.1-201ENST00000604134 111 ntBASIC1.35□□□□□ -2.19
HOXD9P28356 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
HOXD9P28356 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.34□□□□□ -2.19
HOXD9P28356 Y_RNA.78-201ENST00000362970 110 ntBASIC1.34□□□□□ -2.19
HOXD9P28356 Y_RNA.328-201ENST00000365208 113 ntBASIC1.34□□□□□ -2.19
HOXD9P28356 RNU6-342P-201ENST00000384521 104 ntBASIC1.34□□□□□ -2.19
HOXD9P28356 MIR758-201ENST00000390227 88 ntBASIC1.34□□□□□ -2.19
HOXD9P28356 RNU6-816P-201ENST00000390914 107 ntBASIC1.34□□□□□ -2.19
HOXD9P28356 SNORA40.6-201ENST00000391153 128 ntBASIC1.34□□□□□ -2.19
HOXD9P28356 RNU6-1268P-201ENST00000391214 107 ntBASIC1.34□□□□□ -2.19
HOXD9P28356 RNU6-1239P-201ENST00000391310 107 ntBASIC1.34□□□□□ -2.19
HOXD9P28356 RNU6-1086P-201ENST00000410930 100 ntBASIC1.34□□□□□ -2.19
HOXD9P28356 ATP6V0E1P1-201ENST00000412537 226 ntBASIC1.34□□□□□ -2.19
HOXD9P28356 AL161722.3-201ENST00000605789 2983 ntBASIC1.34□□□□□ -2.2
HOXD9P28356 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.33□□□□□ -2.2
HOXD9P28356 RNU6-766P-201ENST00000362478 107 ntBASIC1.33□□□□□ -2.2
HOXD9P28356 RNU6-396P-201ENST00000365369 105 ntBASIC1.33□□□□□ -2.2
HOXD9P28356 SNORA18-201ENST00000384416 132 ntBASIC1.33□□□□□ -2.2
HOXD9P28356 Y_RNA.507-201ENST00000384500 99 ntBASIC1.33□□□□□ -2.2
HOXD9P28356 MT-TN-201ENST00000387400 73 ntBASIC1.33□□□□□ -2.2
HOXD9P28356 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.33□□□□□ -2.2
HOXD9P28356 RNU6-947P-201ENST00000516264 106 ntBASIC1.33□□□□□ -2.2
HOXD9P28356 RNU6-165P-201ENST00000517170 99 ntBASIC1.33□□□□□ -2.2
HOXD9P28356 AL512310.8-201ENST00000550183 120 ntBASIC1.33□□□□□ -2.2
HOXD9P28356 MIR1255B1-201ENST00000636325 63 ntBASIC1.33□□□□□ -2.2
HOXD9P28356 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
HOXD9P28356 RNA5SP264-201ENST00000363115 107 ntBASIC1.32□□□□□ -2.2
HOXD9P28356 RNU4-67P-201ENST00000364569 141 ntBASIC1.32□□□□□ -2.2
HOXD9P28356 SNORA32-201ENST00000384072 121 ntBASIC1.32□□□□□ -2.2
HOXD9P28356 RNU6-1113P-201ENST00000384348 107 ntBASIC1.32□□□□□ -2.2
HOXD9P28356 RNU6-616P-201ENST00000384353 107 ntBASIC1.32□□□□□ -2.2
HOXD9P28356 MIR1185-1-201ENST00000408598 86 ntBASIC1.32□□□□□ -2.2
HOXD9P28356 RNU6-1054P-201ENST00000411293 104 ntBASIC1.32□□□□□ -2.2
HOXD9P28356 RPL39P25-201ENST00000449384 154 ntBASIC1.32□□□□□ -2.2
HOXD9P28356 MIR450A1-201ENST00000362262 91 ntBASIC1.31□□□□□ -2.2
HOXD9P28356 MIR337-201ENST00000362281 93 ntBASIC1.31□□□□□ -2.2
HOXD9P28356 SNORA25.3-201ENST00000363205 127 ntBASIC1.31□□□□□ -2.2
HOXD9P28356 RNU6-53P-201ENST00000365367 106 ntBASIC1.31□□□□□ -2.2
HOXD9P28356 RNU6-32P-201ENST00000383948 107 ntBASIC1.31□□□□□ -2.2
HOXD9P28356 RNU6-756P-201ENST00000383997 107 ntBASIC1.31□□□□□ -2.2
HOXD9P28356 SNORA51.5-201ENST00000384126 131 ntBASIC1.31□□□□□ -2.2
HOXD9P28356 RNU6-13P-201ENST00000384248 107 ntBASIC1.31□□□□□ -2.2
HOXD9P28356 RNU6-12P-201ENST00000384604 107 ntBASIC1.31□□□□□ -2.2
HOXD9P28356 RNU6-41P-201ENST00000384741 107 ntBASIC1.31□□□□□ -2.2
HOXD9P28356 MIR563-201ENST00000385080 79 ntBASIC1.31□□□□□ -2.2
HOXD9P28356 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.31□□□□□ -2.2
HOXD9P28356 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.31□□□□□ -2.2
HOXD9P28356 RPS29P23-201ENST00000458635 123 ntBASIC1.31□□□□□ -2.2
HOXD9P28356 snoU13.2-201ENST00000459201 104 ntBASIC1.31□□□□□ -2.2
HOXD9P28356 RNU7-79P-201ENST00000516082 62 ntBASIC1.31□□□□□ -2.2
HOXD9P28356 RNU6-1018P-201ENST00000516577 106 ntBASIC1.31□□□□□ -2.2
HOXD9P28356 MIR2115-201ENST00000516657 100 ntBASIC1.31□□□□□ -2.2
HOXD9P28356 FAM71BP1-201ENST00000604431 523 ntBASIC1.31□□□□□ -2.2
HOXD9P28356 RNU6-409P-201ENST00000384114 104 ntBASIC1.3□□□□□ -2.2
HOXD9P28356 SNORD26-201ENST00000384147 75 ntBASIC1.3□□□□□ -2.2
HOXD9P28356 RNU6-613P-201ENST00000410412 108 ntBASIC1.3□□□□□ -2.2
HOXD9P28356 RNU6-733P-201ENST00000410759 104 ntBASIC1.3□□□□□ -2.2
HOXD9P28356 RNU6-168P-201ENST00000516189 101 ntBASIC1.3□□□□□ -2.2
HOXD9P28356 RN7SKP88-201ENST00000516847 250 ntBASIC1.3□□□□□ -2.2
HOXD9P28356 RNU6-537P-201ENST00000517277 103 ntBASIC1.3□□□□□ -2.2
HOXD9P28356 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.3□□□□□ -2.2
HOXD9P28356 MIR4264-201ENST00000583520 66 ntBASIC1.3□□□□□ -2.2
HOXD9P28356 7SK.8-201ENST00000612110 250 ntBASIC1.3□□□□□ -2.2
HOXD9P28356 7SK.11-201ENST00000615477 250 ntBASIC1.3□□□□□ -2.2
HOXD9P28356 MIR8070-201ENST00000616510 88 ntBASIC1.3□□□□□ -2.2
HOXD9P28356 7SK.13-201ENST00000622040 250 ntBASIC1.3□□□□□ -2.2
HOXD9P28356 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.3□□□□□ -2.2
HOXD9P28356 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.29□□□□□ -2.2
HOXD9P28356 MIR377-201ENST00000362145 69 ntBASIC1.29□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 168.7 ms