Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 RNU6-704P-201ENST00000364162 103 ntBASIC0.54□□□□□ -2.32
COL5A1P20908 RNY1P5-201ENST00000383890 115 ntBASIC0.54□□□□□ -2.32
COL5A1P20908 Y_RNA.464-201ENST00000384282 110 ntBASIC0.54□□□□□ -2.32
COL5A1P20908 RNU6-959P-201ENST00000384671 107 ntBASIC0.54□□□□□ -2.32
COL5A1P20908 MIR518F-201ENST00000384973 87 ntBASIC0.54□□□□□ -2.32
COL5A1P20908 SNORD111-201ENST00000408139 94 ntBASIC0.54□□□□□ -2.32
COL5A1P20908 MIR1265-201ENST00000408444 86 ntBASIC0.54□□□□□ -2.32
COL5A1P20908 RNU6-613P-201ENST00000410412 108 ntBASIC0.54□□□□□ -2.32
COL5A1P20908 AC244023.1-201ENST00000426884 112 ntBASIC0.54□□□□□ -2.32
COL5A1P20908 AF228730.3-201ENST00000436691 102 ntBASIC0.54□□□□□ -2.32
COL5A1P20908 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.54□□□□□ -2.32
COL5A1P20908 RNU7-197P-201ENST00000458836 62 ntBASIC0.54□□□□□ -2.32
COL5A1P20908 RNU7-90P-201ENST00000459216 62 ntBASIC0.54□□□□□ -2.32
COL5A1P20908 RNU7-96P-201ENST00000459535 64 ntBASIC0.54□□□□□ -2.32
COL5A1P20908 AC107297.1-201ENST00000459991 176 ntBASIC0.54□□□□□ -2.32
COL5A1P20908 AC133485.4-201ENST00000561835 220 ntBASIC0.54□□□□□ -2.32
COL5A1P20908 AC138907.4-201ENST00000570107 226 ntBASIC0.54□□□□□ -2.32
COL5A1P20908 AC242498.1-201ENST00000604134 111 ntBASIC0.54□□□□□ -2.32
COL5A1P20908 PRELID3BP2-201ENST00000605362 201 ntBASIC0.54□□□□□ -2.32
COL5A1P20908 AL096861.1-201ENST00000610899 123 ntBASIC0.54□□□□□ -2.32
COL5A1P20908 MTND1P7-201ENST00000632801 297 ntBASIC0.54□□□□□ -2.32
COL5A1P20908 RNU4-11P-201ENST00000365287 132 ntBASIC0.53□□□□□ -2.32
COL5A1P20908 RNU6-1062P-201ENST00000383908 107 ntBASIC0.53□□□□□ -2.32
COL5A1P20908 RNU6-449P-201ENST00000383914 107 ntBASIC0.53□□□□□ -2.32
COL5A1P20908 RNU6-746P-201ENST00000384112 109 ntBASIC0.53□□□□□ -2.32
COL5A1P20908 RNU6-460P-201ENST00000391158 108 ntBASIC0.53□□□□□ -2.32
COL5A1P20908 RNU6-893P-201ENST00000458841 100 ntBASIC0.53□□□□□ -2.32
COL5A1P20908 SNORD79.1-201ENST00000516069 84 ntBASIC0.53□□□□□ -2.32
COL5A1P20908 Y_RNA.686-201ENST00000516548 134 ntBASIC0.53□□□□□ -2.32
COL5A1P20908 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.53□□□□□ -2.32
COL5A1P20908 AP000753.3-201ENST00000604083 169 ntBASIC0.53□□□□□ -2.32
COL5A1P20908 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC0.53□□□□□ -2.32
COL5A1P20908 AC010332.2-201ENST00000613083 1904 ntBASIC0.53□□□□□ -2.32
COL5A1P20908 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.52□□□□□ -2.33
COL5A1P20908 RNA5SP264-201ENST00000363115 107 ntBASIC0.52□□□□□ -2.33
COL5A1P20908 RNU6-690P-201ENST00000365242 106 ntBASIC0.52□□□□□ -2.33
COL5A1P20908 SNORD24-201ENST00000383884 75 ntBASIC0.52□□□□□ -2.33
COL5A1P20908 Y_RNA.420-201ENST00000384043 110 ntBASIC0.52□□□□□ -2.33
COL5A1P20908 RNU6-804P-201ENST00000384286 107 ntBASIC0.52□□□□□ -2.33
COL5A1P20908 Y_RNA.488-201ENST00000384403 102 ntBASIC0.52□□□□□ -2.33
COL5A1P20908 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.52□□□□□ -2.33
COL5A1P20908 RNU7-123P-201ENST00000515911 60 ntBASIC0.52□□□□□ -2.33
COL5A1P20908 RNA5SP272-201ENST00000516095 111 ntBASIC0.52□□□□□ -2.33
COL5A1P20908 AL137067.1-201ENST00000615933 120 ntBASIC0.52□□□□□ -2.33
COL5A1P20908 Z97988.1-201ENST00000637697 135 ntBASIC0.52□□□□□ -2.33
COL5A1P20908 RNA5SP48-201ENST00000363969 126 ntBASIC0.52□□□□□ -2.33
COL5A1P20908 Y_RNA.218-201ENST00000364218 104 ntBASIC0.52□□□□□ -2.33
COL5A1P20908 RNU6-978P-201ENST00000364371 103 ntBASIC0.52□□□□□ -2.33
COL5A1P20908 Y_RNA.363-201ENST00000365529 113 ntBASIC0.52□□□□□ -2.33
COL5A1P20908 RNU6-1237P-201ENST00000384777 107 ntBASIC0.52□□□□□ -2.33
COL5A1P20908 SNORD41-201ENST00000386967 70 ntBASIC0.52□□□□□ -2.33
COL5A1P20908 RNA5SP261-201ENST00000410536 106 ntBASIC0.52□□□□□ -2.33
COL5A1P20908 Y_RNA.617-201ENST00000410920 90 ntBASIC0.52□□□□□ -2.33
COL5A1P20908 RNU6-1211P-201ENST00000459179 105 ntBASIC0.52□□□□□ -2.33
COL5A1P20908 RNU6-240P-201ENST00000516098 97 ntBASIC0.52□□□□□ -2.33
COL5A1P20908 SNORD36C-201ENST00000516733 66 ntBASIC0.52□□□□□ -2.33
COL5A1P20908 MIR548AO-201ENST00000579992 96 ntBASIC0.52□□□□□ -2.33
COL5A1P20908 MIR6740-201ENST00000618268 113 ntBASIC0.52□□□□□ -2.33
COL5A1P20908 AP001340.1-201ENST00000624405 217 ntBASIC0.52□□□□□ -2.33
COL5A1P20908 Y_RNA.215-201ENST00000364204 112 ntBASIC0.51□□□□□ -2.33
COL5A1P20908 SNORA25.7-201ENST00000364375 127 ntBASIC0.51□□□□□ -2.33
COL5A1P20908 Y_RNA.366-201ENST00000365540 102 ntBASIC0.51□□□□□ -2.33
COL5A1P20908 SNORA20-201ENST00000384662 132 ntBASIC0.51□□□□□ -2.33
COL5A1P20908 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.51□□□□□ -2.33
COL5A1P20908 AL022718.1-201ENST00000412004 84 ntBASIC0.51□□□□□ -2.33
COL5A1P20908 MTND4LP9-201ENST00000427694 174 ntBASIC0.51□□□□□ -2.33
COL5A1P20908 U7.2-201ENST00000607576 63 ntBASIC0.51□□□□□ -2.33
COL5A1P20908 AL662814.1-201ENST00000617364 121 ntBASIC0.51□□□□□ -2.33
COL5A1P20908 AC012676.2-201ENST00000619258 186 ntBASIC0.51□□□□□ -2.33
COL5A1P20908 RNU6-647P-201ENST00000364243 107 ntBASIC0.5□□□□□ -2.33
COL5A1P20908 RNA5SP331-201ENST00000364986 107 ntBASIC0.5□□□□□ -2.33
COL5A1P20908 RNU6-580P-201ENST00000365159 107 ntBASIC0.5□□□□□ -2.33
COL5A1P20908 Y_RNA.454-201ENST00000384224 113 ntBASIC0.5□□□□□ -2.33
COL5A1P20908 RNU6-1065P-201ENST00000384513 106 ntBASIC0.5□□□□□ -2.33
COL5A1P20908 Y_RNA.568-201ENST00000384742 113 ntBASIC0.5□□□□□ -2.33
COL5A1P20908 MIR608-201ENST00000384820 100 ntBASIC0.5□□□□□ -2.33
COL5A1P20908 SNORA75.2-201ENST00000391138 150 ntBASIC0.5□□□□□ -2.33
COL5A1P20908 SNORA75.3-201ENST00000391231 150 ntBASIC0.5□□□□□ -2.33
COL5A1P20908 RNU6-735P-201ENST00000410612 107 ntBASIC0.5□□□□□ -2.33
COL5A1P20908 AL606490.4-201ENST00000423117 127 ntBASIC0.5□□□□□ -2.33
COL5A1P20908 RPL39P25-201ENST00000449384 154 ntBASIC0.5□□□□□ -2.33
COL5A1P20908 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC0.5□□□□□ -2.33
COL5A1P20908 RNU7-113P-201ENST00000459273 62 ntBASIC0.5□□□□□ -2.33
COL5A1P20908 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.5□□□□□ -2.33
COL5A1P20908 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.5□□□□□ -2.33
COL5A1P20908 MIR5589-201ENST00000579442 60 ntBASIC0.5□□□□□ -2.33
COL5A1P20908 MIR548X2-201ENST00000579776 100 ntBASIC0.5□□□□□ -2.33
COL5A1P20908 MIR4305-201ENST00000583252 102 ntBASIC0.5□□□□□ -2.33
COL5A1P20908 AC108081.1-201ENST00000604358 221 ntBASIC0.5□□□□□ -2.33
COL5A1P20908 AL022345.2-201ENST00000606307 135 ntBASIC0.5□□□□□ -2.33
COL5A1P20908 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.5□□□□□ -2.33
COL5A1P20908 MIR103A2-201ENST00000362154 78 ntBASIC0.5□□□□□ -2.33
COL5A1P20908 RNU6-949P-201ENST00000384040 107 ntBASIC0.5□□□□□ -2.33
COL5A1P20908 Y_RNA.430-201ENST00000384081 110 ntBASIC0.5□□□□□ -2.33
COL5A1P20908 RNU6-364P-201ENST00000384387 107 ntBASIC0.5□□□□□ -2.33
COL5A1P20908 Y_RNA.531-201ENST00000384589 121 ntBASIC0.5□□□□□ -2.33
COL5A1P20908 MIR100-201ENST00000385259 80 ntBASIC0.5□□□□□ -2.33
COL5A1P20908 SNORA40-201ENST00000388090 126 ntBASIC0.5□□□□□ -2.33
COL5A1P20908 RNU6-255P-201ENST00000516957 105 ntBASIC0.5□□□□□ -2.33
COL5A1P20908 RNU7-35P-201ENST00000517174 62 ntBASIC0.5□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms