Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 Y_RNA.470-201ENST00000384307 117 ntBASIC1.93□□□□□ -2.1
COL6A1P12109 MIR520C-201ENST00000385005 87 ntBASIC1.93□□□□□ -2.1
COL6A1P12109 RNU6-1190P-201ENST00000410811 104 ntBASIC1.93□□□□□ -2.1
COL6A1P12109 MIR4694-201ENST00000578534 80 ntBASIC1.93□□□□□ -2.1
COL6A1P12109 Y_RNA.773-201ENST00000607168 90 ntBASIC1.93□□□□□ -2.1
COL6A1P12109 MIR1255B1-201ENST00000636325 63 ntBASIC1.93□□□□□ -2.1
COL6A1P12109 SNORD33-201ENST00000362761 85 ntBASIC1.92□□□□□ -2.1
COL6A1P12109 RNY3P2-201ENST00000362918 102 ntBASIC1.92□□□□□ -2.1
COL6A1P12109 Y_RNA.107-201ENST00000363190 121 ntBASIC1.92□□□□□ -2.1
COL6A1P12109 SNORA16.1-201ENST00000364597 132 ntBASIC1.92□□□□□ -2.1
COL6A1P12109 RNU6-203P-201ENST00000384038 104 ntBASIC1.92□□□□□ -2.1
COL6A1P12109 RNU6-917P-201ENST00000516294 104 ntBASIC1.92□□□□□ -2.1
COL6A1P12109 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.92□□□□□ -2.1
COL6A1P12109 Y_RNA.220-201ENST00000364244 109 ntBASIC1.91□□□□□ -2.1
COL6A1P12109 MIR194-1-201ENST00000384892 85 ntBASIC1.91□□□□□ -2.1
COL6A1P12109 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.91□□□□□ -2.1
COL6A1P12109 AL451046.2-201ENST00000403074 277 ntBASIC1.91□□□□□ -2.1
COL6A1P12109 Y_RNA.601-201ENST00000410500 113 ntBASIC1.91□□□□□ -2.1
COL6A1P12109 MTATP8P2-201ENST00000435212 202 ntBASIC1.91□□□□□ -2.1
COL6A1P12109 SCARNA23-201ENST00000516060 130 ntBASIC1.91□□□□□ -2.1
COL6A1P12109 AL645939.4-201ENST00000604495 135 ntBASIC1.91□□□□□ -2.1
COL6A1P12109 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.91□□□□□ -2.1
COL6A1P12109 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.9□□□□□ -2.1
COL6A1P12109 RNU6-1099P-201ENST00000363533 107 ntBASIC1.9□□□□□ -2.11
COL6A1P12109 RNU6-1131P-201ENST00000364955 107 ntBASIC1.9□□□□□ -2.11
COL6A1P12109 Y_RNA.360-201ENST00000365512 102 ntBASIC1.9□□□□□ -2.11
COL6A1P12109 RNU6-616P-201ENST00000384353 107 ntBASIC1.9□□□□□ -2.11
COL6A1P12109 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.9□□□□□ -2.11
COL6A1P12109 HMGN1P33-201ENST00000432945 451 ntBASIC1.9□□□□□ -2.11
COL6A1P12109 CYP3A52P-201ENST00000563326 91 ntBASIC1.9□□□□□ -2.11
COL6A1P12109 MIR8055-201ENST00000610739 97 ntBASIC1.9□□□□□ -2.11
COL6A1P12109 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.9□□□□□ -2.11
COL6A1P12109 RNU6-294P-201ENST00000364999 102 ntBASIC1.89□□□□□ -2.11
COL6A1P12109 RNA5SP259-201ENST00000365541 109 ntBASIC1.89□□□□□ -2.11
COL6A1P12109 SNORA32-201ENST00000384072 121 ntBASIC1.89□□□□□ -2.11
COL6A1P12109 MIR513A1-201ENST00000385138 129 ntBASIC1.89□□□□□ -2.11
COL6A1P12109 MIR653-201ENST00000385279 96 ntBASIC1.89□□□□□ -2.11
COL6A1P12109 RNU1-78P-201ENST00000391248 165 ntBASIC1.89□□□□□ -2.11
COL6A1P12109 SNORA7.5-201ENST00000410672 110 ntBASIC1.89□□□□□ -2.11
COL6A1P12109 AC079140.2-201ENST00000506193 142 ntBASIC1.89□□□□□ -2.11
COL6A1P12109 Z97988.1-201ENST00000637697 135 ntBASIC1.89□□□□□ -2.11
COL6A1P12109 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.89□□□□□ -2.11
COL6A1P12109 RNU6-832P-201ENST00000363319 107 ntBASIC1.88□□□□□ -2.11
COL6A1P12109 MIR1302-4-201ENST00000408701 150 ntBASIC1.88□□□□□ -2.11
COL6A1P12109 AC245047.7-201ENST00000440265 293 ntBASIC1.88□□□□□ -2.11
COL6A1P12109 AC009474.2-201ENST00000451383 136 ntBASIC1.88□□□□□ -2.11
COL6A1P12109 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.88□□□□□ -2.11
COL6A1P12109 RNU6-1018P-201ENST00000516577 106 ntBASIC1.88□□□□□ -2.11
COL6A1P12109 MIR3937-201ENST00000580135 106 ntBASIC1.88□□□□□ -2.11
COL6A1P12109 MIR3935-201ENST00000583472 104 ntBASIC1.88□□□□□ -2.11
COL6A1P12109 MIR4251-201ENST00000635819 61 ntBASIC1.88□□□□□ -2.11
COL6A1P12109 Y_RNA.558-201ENST00000384685 113 ntBASIC1.87□□□□□ -2.11
COL6A1P12109 MIR577-201ENST00000385196 96 ntBASIC1.87□□□□□ -2.11
COL6A1P12109 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.87□□□□□ -2.11
COL6A1P12109 Y_RNA.191-201ENST00000363972 113 ntBASIC1.86□□□□□ -2.11
COL6A1P12109 RNU6-60P-201ENST00000364792 103 ntBASIC1.86□□□□□ -2.11
COL6A1P12109 SNORA18-201ENST00000384416 132 ntBASIC1.86□□□□□ -2.11
COL6A1P12109 RNU6-1065P-201ENST00000384513 106 ntBASIC1.86□□□□□ -2.11
COL6A1P12109 MIR605-201ENST00000385078 83 ntBASIC1.86□□□□□ -2.11
COL6A1P12109 AL161935.2-201ENST00000414627 60 ntBASIC1.86□□□□□ -2.11
COL6A1P12109 RNU1-123P-201ENST00000458950 160 ntBASIC1.86□□□□□ -2.11
COL6A1P12109 RNU1-98P-201ENST00000458992 160 ntBASIC1.86□□□□□ -2.11
COL6A1P12109 SNORD111.1-201ENST00000516421 86 ntBASIC1.86□□□□□ -2.11
COL6A1P12109 RNU6-521P-201ENST00000516663 105 ntBASIC1.86□□□□□ -2.11
COL6A1P12109 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.86□□□□□ -2.11
COL6A1P12109 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
COL6A1P12109 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
COL6A1P12109 Y_RNA.96-201ENST00000363092 109 ntBASIC1.85□□□□□ -2.11
COL6A1P12109 RNA5SP48-201ENST00000363969 126 ntBASIC1.85□□□□□ -2.11
COL6A1P12109 RNU1-42P-201ENST00000364033 160 ntBASIC1.85□□□□□ -2.11
COL6A1P12109 SNORD45B-201ENST00000364617 72 ntBASIC1.85□□□□□ -2.11
COL6A1P12109 RNU6-49P-201ENST00000384256 107 ntBASIC1.85□□□□□ -2.11
COL6A1P12109 RNU6-679P-201ENST00000391003 106 ntBASIC1.85□□□□□ -2.11
COL6A1P12109 MIR4419B-201ENST00000577260 68 ntBASIC1.85□□□□□ -2.11
COL6A1P12109 SNORA77B-201ENST00000578179 125 ntBASIC1.85□□□□□ -2.11
COL6A1P12109 MIR4452-201ENST00000583004 71 ntBASIC1.85□□□□□ -2.11
COL6A1P12109 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.85□□□□□ -2.11
COL6A1P12109 AL357312.1-201ENST00000603879 298 ntBASIC1.85□□□□□ -2.11
COL6A1P12109 AC096720.1-201ENST00000604441 183 ntBASIC1.85□□□□□ -2.11
COL6A1P12109 RMST_2.1-201ENST00000617263 136 ntBASIC1.85□□□□□ -2.11
COL6A1P12109 MALAT1.1-201ENST00000618249 95 ntBASIC1.85□□□□□ -2.11
COL6A1P12109 MIR8065-201ENST00000620577 100 ntBASIC1.85□□□□□ -2.11
COL6A1P12109 AL512310.12-203ENST00000640543 90 ntBASIC1.85□□□□□ -2.11
COL6A1P12109 Y_RNA.377-201ENST00000365644 108 ntBASIC1.84□□□□□ -2.11
COL6A1P12109 MIR488-201ENST00000365739 83 ntBASIC1.84□□□□□ -2.11
COL6A1P12109 SNORD38B-201ENST00000384690 67 ntBASIC1.84□□□□□ -2.11
COL6A1P12109 RNU6-602P-201ENST00000411155 105 ntBASIC1.84□□□□□ -2.11
COL6A1P12109 MIR1270-201ENST00000459320 83 ntBASIC1.84□□□□□ -2.11
COL6A1P12109 RNA5SP102-201ENST00000516865 106 ntBASIC1.84□□□□□ -2.11
COL6A1P12109 MIR548AO-201ENST00000579992 96 ntBASIC1.84□□□□□ -2.11
COL6A1P12109 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.84□□□□□ -2.11
COL6A1P12109 SNORD38B-202ENST00000625943 69 ntBASIC1.84□□□□□ -2.11
COL6A1P12109 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.83□□□□□ -2.12
COL6A1P12109 SNORA7.1-201ENST00000363750 139 ntBASIC1.83□□□□□ -2.12
COL6A1P12109 SNORD115-35-201ENST00000365122 82 ntBASIC1.83□□□□□ -2.12
COL6A1P12109 SUMO2P12-201ENST00000405924 140 ntBASIC1.83□□□□□ -2.12
COL6A1P12109 AC096949.1-201ENST00000412047 152 ntBASIC1.83□□□□□ -2.12
COL6A1P12109 RNU7-35P-201ENST00000517174 62 ntBASIC1.83□□□□□ -2.12
COL6A1P12109 AC019176.1-201ENST00000518519 225 ntBASIC1.83□□□□□ -2.12
COL6A1P12109 SNORD53B-201ENST00000577887 78 ntBASIC1.83□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms