Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC25.58■■□□□ 1.69
NPHP3Q7Z494 AC008556.1-201ENST00000610908 2040 ntBASIC25.58■■□□□ 1.69
NPHP3Q7Z494 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC25.58■■□□□ 1.69
NPHP3Q7Z494 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC25.58■■□□□ 1.69
NPHP3Q7Z494 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC25.58■■□□□ 1.69
NPHP3Q7Z494 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
NPHP3Q7Z494 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC25.58■■□□□ 1.69
NPHP3Q7Z494 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
NPHP3Q7Z494 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
NPHP3Q7Z494 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
NPHP3Q7Z494 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
NPHP3Q7Z494 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC25.58■■□□□ 1.69
NPHP3Q7Z494 AF186996.4-201ENST00000467186 377 ntBASIC25.58■■□□□ 1.69
NPHP3Q7Z494 POLD2P1-201ENST00000511220 997 ntBASIC25.58■■□□□ 1.69
NPHP3Q7Z494 MIR3180-4-201ENST00000582223 153 ntBASIC25.58■■□□□ 1.69
NPHP3Q7Z494 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC25.58■■□□□ 1.69
NPHP3Q7Z494 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC25.57■■□□□ 1.68
NPHP3Q7Z494 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
NPHP3Q7Z494 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC25.57■■□□□ 1.68
NPHP3Q7Z494 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC25.57■■□□□ 1.68
NPHP3Q7Z494 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
NPHP3Q7Z494 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC25.57■■□□□ 1.68
NPHP3Q7Z494 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC25.57■■□□□ 1.68
NPHP3Q7Z494 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC25.57■■□□□ 1.68
NPHP3Q7Z494 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
NPHP3Q7Z494 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
NPHP3Q7Z494 ELP6-205ENST00000439305 880 ntTSL 2 BASIC25.57■■□□□ 1.68
NPHP3Q7Z494 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC25.57■■□□□ 1.68
NPHP3Q7Z494 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
NPHP3Q7Z494 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
NPHP3Q7Z494 AC243591.1-201ENST00000452967 1364 ntBASIC25.56■■□□□ 1.68
NPHP3Q7Z494 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
NPHP3Q7Z494 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC25.56■■□□□ 1.68
NPHP3Q7Z494 AC073314.1-201ENST00000568729 2216 ntBASIC25.56■■□□□ 1.68
NPHP3Q7Z494 ENSA-205ENST00000361532 792 ntTSL 2 BASIC25.56■■□□□ 1.68
NPHP3Q7Z494 BX842568.4-201ENST00000421222 227 ntBASIC25.56■■□□□ 1.68
NPHP3Q7Z494 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC25.56■■□□□ 1.68
NPHP3Q7Z494 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC25.56■■□□□ 1.68
NPHP3Q7Z494 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC25.56■■□□□ 1.68
NPHP3Q7Z494 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC25.56■■□□□ 1.68
NPHP3Q7Z494 AC148477.8-201ENST00000624298 468 ntBASIC25.56■■□□□ 1.68
NPHP3Q7Z494 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
NPHP3Q7Z494 PMS2P7-201ENST00000506558 1336 ntBASIC25.56■■□□□ 1.68
NPHP3Q7Z494 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
NPHP3Q7Z494 AL162377.1-201ENST00000618844 1793 ntBASIC25.55■■□□□ 1.68
NPHP3Q7Z494 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC25.55■■□□□ 1.68
NPHP3Q7Z494 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
NPHP3Q7Z494 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
NPHP3Q7Z494 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC25.55■■□□□ 1.68
NPHP3Q7Z494 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC25.55■■□□□ 1.68
NPHP3Q7Z494 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
NPHP3Q7Z494 POM121L3P-201ENST00000419331 1163 ntBASIC25.55■■□□□ 1.68
NPHP3Q7Z494 COX10-202ENST00000429152 875 ntTSL 2 BASIC25.55■■□□□ 1.68
NPHP3Q7Z494 PPOX-214ENST00000535223 664 ntTSL 3 BASIC25.55■■□□□ 1.68
NPHP3Q7Z494 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
NPHP3Q7Z494 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC25.54■■□□□ 1.68
NPHP3Q7Z494 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
NPHP3Q7Z494 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
NPHP3Q7Z494 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC25.54■■□□□ 1.68
NPHP3Q7Z494 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
NPHP3Q7Z494 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC25.54■■□□□ 1.68
NPHP3Q7Z494 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC25.54■■□□□ 1.68
NPHP3Q7Z494 MINOS1P3-201ENST00000457048 203 ntBASIC25.54■■□□□ 1.68
NPHP3Q7Z494 AC093909.1-201ENST00000504731 1122 ntBASIC25.54■■□□□ 1.68
NPHP3Q7Z494 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC25.54■■□□□ 1.68
NPHP3Q7Z494 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC25.54■■□□□ 1.68
NPHP3Q7Z494 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
NPHP3Q7Z494 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
NPHP3Q7Z494 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC25.53■■□□□ 1.68
NPHP3Q7Z494 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
NPHP3Q7Z494 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
NPHP3Q7Z494 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
NPHP3Q7Z494 AL512353.2-201ENST00000448759 1962 ntBASIC25.53■■□□□ 1.68
NPHP3Q7Z494 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
NPHP3Q7Z494 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC25.53■■□□□ 1.68
NPHP3Q7Z494 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
NPHP3Q7Z494 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC25.53■■□□□ 1.68
NPHP3Q7Z494 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC25.53■■□□□ 1.68
NPHP3Q7Z494 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
NPHP3Q7Z494 AC018712.1-201ENST00000455767 687 ntBASIC25.53■■□□□ 1.68
NPHP3Q7Z494 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC25.53■■□□□ 1.68
NPHP3Q7Z494 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC25.53■■□□□ 1.68
NPHP3Q7Z494 AC024563.2-201ENST00000603282 481 ntBASIC25.53■■□□□ 1.68
NPHP3Q7Z494 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC25.53■■□□□ 1.68
NPHP3Q7Z494 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
NPHP3Q7Z494 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC25.53■■□□□ 1.68
NPHP3Q7Z494 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC25.53■■□□□ 1.68
NPHP3Q7Z494 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC25.53■■□□□ 1.68
NPHP3Q7Z494 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC25.53■■□□□ 1.68
NPHP3Q7Z494 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC25.53■■□□□ 1.68
NPHP3Q7Z494 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC25.52■■□□□ 1.68
NPHP3Q7Z494 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
NPHP3Q7Z494 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
NPHP3Q7Z494 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC25.52■■□□□ 1.68
NPHP3Q7Z494 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
NPHP3Q7Z494 FABP5-202ENST00000396359 986 ntTSL 5 BASIC25.52■■□□□ 1.68
NPHP3Q7Z494 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
NPHP3Q7Z494 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
NPHP3Q7Z494 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC25.52■■□□□ 1.68
NPHP3Q7Z494 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC25.52■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms