Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trbv1A0A0B4J1G7 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trbv1A0A0B4J1G7 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trbv1A0A0B4J1G7 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trbv1A0A0B4J1G7 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trbv1A0A0B4J1G7 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Trbv1A0A0B4J1G7 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Trbv1A0A0B4J1G7 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC12.59□□□□□ -0.39
Trbv1A0A0B4J1G7 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv1A0A0B4J1G7 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv1A0A0B4J1G7 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv1A0A0B4J1G7 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv1A0A0B4J1G7 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv1A0A0B4J1G7 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv1A0A0B4J1G7 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv1A0A0B4J1G7 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv1A0A0B4J1G7 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv1A0A0B4J1G7 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv1A0A0B4J1G7 Gm12085-201ENSMUST00000119263 940 ntBASIC12.59□□□□□ -0.39
Trbv1A0A0B4J1G7 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC12.59□□□□□ -0.39
Trbv1A0A0B4J1G7 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv1A0A0B4J1G7 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv1A0A0B4J1G7 Gm17661-201ENSMUST00000170317 270 ntBASIC12.59□□□□□ -0.39
Trbv1A0A0B4J1G7 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC12.59□□□□□ -0.39
Trbv1A0A0B4J1G7 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC12.59□□□□□ -0.39
Trbv1A0A0B4J1G7 Gm38027-201ENSMUST00000192315 235 ntBASIC12.59□□□□□ -0.39
Trbv1A0A0B4J1G7 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv1A0A0B4J1G7 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv1A0A0B4J1G7 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Trbv1A0A0B4J1G7 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv1A0A0B4J1G7 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
Trbv1A0A0B4J1G7 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv1A0A0B4J1G7 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv1A0A0B4J1G7 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv1A0A0B4J1G7 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Trbv1A0A0B4J1G7 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv1A0A0B4J1G7 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv1A0A0B4J1G7 Gm45760-201ENSMUST00000212190 1782 ntBASIC12.58□□□□□ -0.39
Trbv1A0A0B4J1G7 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Trbv1A0A0B4J1G7 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Trbv1A0A0B4J1G7 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Trbv1A0A0B4J1G7 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Trbv1A0A0B4J1G7 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 Gm13181-201ENSMUST00000120117 1069 ntBASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv1A0A0B4J1G7 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trbv1A0A0B4J1G7 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trbv1A0A0B4J1G7 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trbv1A0A0B4J1G7 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trbv1A0A0B4J1G7 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Trbv1A0A0B4J1G7 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trbv1A0A0B4J1G7 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trbv1A0A0B4J1G7 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trbv1A0A0B4J1G7 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC12.57□□□□□ -0.4
Trbv1A0A0B4J1G7 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trbv1A0A0B4J1G7 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trbv1A0A0B4J1G7 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Trbv1A0A0B4J1G7 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trbv1A0A0B4J1G7 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC12.57□□□□□ -0.4
Trbv1A0A0B4J1G7 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC12.57□□□□□ -0.4
Trbv1A0A0B4J1G7 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC12.57□□□□□ -0.4
Trbv1A0A0B4J1G7 Gm9731-201ENSMUST00000209480 747 ntBASIC12.57□□□□□ -0.4
Trbv1A0A0B4J1G7 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC12.57□□□□□ -0.4
Trbv1A0A0B4J1G7 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC12.57□□□□□ -0.4
Trbv1A0A0B4J1G7 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trbv1A0A0B4J1G7 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trbv1A0A0B4J1G7 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms