Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 IGKV1-22-201ENST00000524313 326 ntBASIC1.1□□□□□ -2.23
SIX4Q9UIU6 AC021443.1-201ENST00000604478 211 ntBASIC1.1□□□□□ -2.23
SIX4Q9UIU6 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.1□□□□□ -2.23
SIX4Q9UIU6 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.09□□□□□ -2.23
SIX4Q9UIU6 Y_RNA.171-201ENST00000363760 102 ntBASIC1.09□□□□□ -2.23
SIX4Q9UIU6 RNU4-38P-201ENST00000364472 129 ntBASIC1.09□□□□□ -2.23
SIX4Q9UIU6 Y_RNA.430-201ENST00000384081 110 ntBASIC1.09□□□□□ -2.23
SIX4Q9UIU6 RNU6-205P-201ENST00000390858 107 ntBASIC1.09□□□□□ -2.23
SIX4Q9UIU6 RNA5SP261-201ENST00000410536 106 ntBASIC1.09□□□□□ -2.23
SIX4Q9UIU6 AC244023.1-201ENST00000426884 112 ntBASIC1.09□□□□□ -2.23
SIX4Q9UIU6 TMSB4XP3-201ENST00000445144 114 ntBASIC1.09□□□□□ -2.23
SIX4Q9UIU6 RNU6-1211P-201ENST00000459179 105 ntBASIC1.09□□□□□ -2.23
SIX4Q9UIU6 RNU2-35P-201ENST00000516446 142 ntBASIC1.09□□□□□ -2.23
SIX4Q9UIU6 RNU11-2P-201ENST00000516898 142 ntBASIC1.09□□□□□ -2.23
SIX4Q9UIU6 RNU6-1258P-201ENST00000516911 111 ntBASIC1.09□□□□□ -2.23
SIX4Q9UIU6 SNORA70.22-201ENST00000517160 124 ntBASIC1.09□□□□□ -2.23
SIX4Q9UIU6 MIR3152-201ENST00000579801 74 ntBASIC1.09□□□□□ -2.23
SIX4Q9UIU6 MIR4305-201ENST00000583252 102 ntBASIC1.09□□□□□ -2.23
SIX4Q9UIU6 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.09□□□□□ -2.23
SIX4Q9UIU6 AC242498.1-201ENST00000604134 111 ntBASIC1.09□□□□□ -2.23
SIX4Q9UIU6 SEPT14P17-201ENST00000617978 177 ntBASIC1.09□□□□□ -2.23
SIX4Q9UIU6 SNORA25-201ENST00000384384 134 ntBASIC1.08□□□□□ -2.24
SIX4Q9UIU6 SNORA80D-201ENST00000384488 135 ntBASIC1.08□□□□□ -2.24
SIX4Q9UIU6 SNORD38B-201ENST00000384690 67 ntBASIC1.08□□□□□ -2.24
SIX4Q9UIU6 SNORD12C-201ENST00000386307 89 ntBASIC1.08□□□□□ -2.24
SIX4Q9UIU6 RNU6-613P-201ENST00000410412 108 ntBASIC1.08□□□□□ -2.24
SIX4Q9UIU6 AL158147.1-201ENST00000443970 75 ntBASIC1.08□□□□□ -2.24
SIX4Q9UIU6 RNU7-21P-201ENST00000459430 62 ntBASIC1.08□□□□□ -2.24
SIX4Q9UIU6 MIR3910-1-201ENST00000580936 111 ntBASIC1.08□□□□□ -2.24
SIX4Q9UIU6 SNORD38B-202ENST00000625943 69 ntBASIC1.08□□□□□ -2.24
SIX4Q9UIU6 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
SIX4Q9UIU6 MIR222-201ENST00000384992 110 ntBASIC1.07□□□□□ -2.24
SIX4Q9UIU6 RPS29P28-201ENST00000446439 141 ntBASIC1.07□□□□□ -2.24
SIX4Q9UIU6 RNU7-164P-201ENST00000459221 62 ntBASIC1.07□□□□□ -2.24
SIX4Q9UIU6 RNU7-123P-201ENST00000515911 60 ntBASIC1.07□□□□□ -2.24
SIX4Q9UIU6 RNU6-781P-201ENST00000516377 101 ntBASIC1.07□□□□□ -2.24
SIX4Q9UIU6 AL137067.1-201ENST00000615933 120 ntBASIC1.07□□□□□ -2.24
SIX4Q9UIU6 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.07□□□□□ -2.24
SIX4Q9UIU6 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
SIX4Q9UIU6 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
SIX4Q9UIU6 AC008163.1-202ENST00000636004 2889 ntBASIC1.06□□□□□ -2.24
SIX4Q9UIU6 Y_RNA.218-201ENST00000364218 104 ntBASIC1.06□□□□□ -2.24
SIX4Q9UIU6 RNU6-647P-201ENST00000364243 107 ntBASIC1.06□□□□□ -2.24
SIX4Q9UIU6 MT-TN-201ENST00000387400 73 ntBASIC1.06□□□□□ -2.24
SIX4Q9UIU6 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.06□□□□□ -2.24
SIX4Q9UIU6 RNU4-61P-201ENST00000411243 107 ntBASIC1.06□□□□□ -2.24
SIX4Q9UIU6 AL512326.2-201ENST00000426359 151 ntBASIC1.06□□□□□ -2.24
SIX4Q9UIU6 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.06□□□□□ -2.24
SIX4Q9UIU6 RN7SKP19-201ENST00000516016 252 ntBASIC1.06□□□□□ -2.24
SIX4Q9UIU6 Y_RNA.676-201ENST00000516393 96 ntBASIC1.06□□□□□ -2.24
SIX4Q9UIU6 RNY4P20-201ENST00000516678 93 ntBASIC1.06□□□□□ -2.24
SIX4Q9UIU6 RNU6-1234P-201ENST00000516877 103 ntBASIC1.06□□□□□ -2.24
SIX4Q9UIU6 AC023827.1-201ENST00000569247 97 ntBASIC1.06□□□□□ -2.24
SIX4Q9UIU6 MIR4264-201ENST00000583520 66 ntBASIC1.06□□□□□ -2.24
SIX4Q9UIU6 AP000753.3-201ENST00000604083 169 ntBASIC1.06□□□□□ -2.24
SIX4Q9UIU6 MIR6740-201ENST00000618268 113 ntBASIC1.06□□□□□ -2.24
SIX4Q9UIU6 MIR377-201ENST00000362145 69 ntBASIC1.05□□□□□ -2.24
SIX4Q9UIU6 RNU1-93P-201ENST00000364704 169 ntBASIC1.05□□□□□ -2.24
SIX4Q9UIU6 Y_RNA.298-201ENST00000364960 107 ntBASIC1.05□□□□□ -2.24
SIX4Q9UIU6 MIR539-201ENST00000365690 78 ntBASIC1.05□□□□□ -2.24
SIX4Q9UIU6 Y_RNA.470-201ENST00000384307 117 ntBASIC1.05□□□□□ -2.24
SIX4Q9UIU6 Y_RNA.525-201ENST00000384570 113 ntBASIC1.05□□□□□ -2.24
SIX4Q9UIU6 AL022718.1-201ENST00000412004 84 ntBASIC1.05□□□□□ -2.24
SIX4Q9UIU6 RNU7-107P-201ENST00000459121 61 ntBASIC1.05□□□□□ -2.24
SIX4Q9UIU6 AC022523.2-201ENST00000561045 150 ntBASIC1.05□□□□□ -2.24
SIX4Q9UIU6 uc_338.6-201ENST00000613544 171 ntBASIC1.05□□□□□ -2.24
SIX4Q9UIU6 AC027335.2-201ENST00000624030 375 ntBASIC1.05□□□□□ -2.24
SIX4Q9UIU6 Y_RNA.354-201ENST00000365448 111 ntBASIC1.04□□□□□ -2.24
SIX4Q9UIU6 SNORA2B-201ENST00000384583 137 ntBASIC1.04□□□□□ -2.24
SIX4Q9UIU6 Y_RNA.617-201ENST00000410920 90 ntBASIC1.04□□□□□ -2.24
SIX4Q9UIU6 AC063976.4-201ENST00000421971 163 ntBASIC1.04□□□□□ -2.24
SIX4Q9UIU6 RNU7-62P-201ENST00000458856 62 ntBASIC1.04□□□□□ -2.24
SIX4Q9UIU6 RNU7-90P-201ENST00000459216 62 ntBASIC1.04□□□□□ -2.24
SIX4Q9UIU6 RNU7-113P-201ENST00000459273 62 ntBASIC1.04□□□□□ -2.24
SIX4Q9UIU6 RNU6-772P-201ENST00000516042 105 ntBASIC1.04□□□□□ -2.24
SIX4Q9UIU6 RNU7-40P-201ENST00000516397 64 ntBASIC1.04□□□□□ -2.24
SIX4Q9UIU6 AC036111.3-201ENST00000526389 112 ntBASIC1.04□□□□□ -2.24
SIX4Q9UIU6 AC004812.1-201ENST00000540773 146 ntBASIC1.04□□□□□ -2.24
SIX4Q9UIU6 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.03□□□□□ -2.24
SIX4Q9UIU6 MIR373-201ENST00000362273 69 ntBASIC1.03□□□□□ -2.24
SIX4Q9UIU6 Y_RNA.71-201ENST00000362892 104 ntBASIC1.03□□□□□ -2.24
SIX4Q9UIU6 Y_RNA.168-201ENST00000363740 102 ntBASIC1.03□□□□□ -2.24
SIX4Q9UIU6 RNU6-81P-201ENST00000365608 104 ntBASIC1.03□□□□□ -2.24
SIX4Q9UIU6 RNU6-342P-201ENST00000384521 104 ntBASIC1.03□□□□□ -2.24
SIX4Q9UIU6 RNU6-959P-201ENST00000384671 107 ntBASIC1.03□□□□□ -2.24
SIX4Q9UIU6 MIR588-201ENST00000384900 83 ntBASIC1.03□□□□□ -2.24
SIX4Q9UIU6 SNORD12-201ENST00000391002 90 ntBASIC1.03□□□□□ -2.24
SIX4Q9UIU6 MRPL35P3-201ENST00000421557 364 ntBASIC1.03□□□□□ -2.24
SIX4Q9UIU6 AC002429.1-201ENST00000437672 148 ntBASIC1.03□□□□□ -2.24
SIX4Q9UIU6 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.03□□□□□ -2.24
SIX4Q9UIU6 RNU6-893P-201ENST00000458841 100 ntBASIC1.03□□□□□ -2.24
SIX4Q9UIU6 snoU13.2-201ENST00000459201 104 ntBASIC1.03□□□□□ -2.24
SIX4Q9UIU6 snoU13.21-201ENST00000459368 105 ntBASIC1.03□□□□□ -2.24
SIX4Q9UIU6 RPS23P4-201ENST00000487908 423 ntBASIC1.03□□□□□ -2.24
SIX4Q9UIU6 AC113410.1-201ENST00000505029 247 ntBASIC1.03□□□□□ -2.24
SIX4Q9UIU6 RNU6-94P-201ENST00000607728 107 ntBASIC1.03□□□□□ -2.24
SIX4Q9UIU6 AC132825.6-201ENST00000638861 357 ntBASIC1.03□□□□□ -2.24
SIX4Q9UIU6 SNORD58C-201ENST00000365223 64 ntBASIC1.02□□□□□ -2.25
SIX4Q9UIU6 RNU6-80P-201ENST00000384195 107 ntBASIC1.02□□□□□ -2.25
SIX4Q9UIU6 Y_RNA.531-201ENST00000384589 121 ntBASIC1.02□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 116.8 ms