Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 RNU4-70P-201ENST00000384579 139 ntBASIC-0.18□□□□□ -2.44
SHANK3Q9BYB0 U8.15-201ENST00000390947 134 ntBASIC-0.18□□□□□ -2.44
SHANK3Q9BYB0 RNU6-101P-201ENST00000410323 104 ntBASIC-0.18□□□□□ -2.44
SHANK3Q9BYB0 Y_RNA.618-201ENST00000410949 107 ntBASIC-0.18□□□□□ -2.44
SHANK3Q9BYB0 AL731563.1-201ENST00000442202 214 ntBASIC-0.18□□□□□ -2.44
SHANK3Q9BYB0 SNRPGP8-201ENST00000454064 226 ntBASIC-0.18□□□□□ -2.44
SHANK3Q9BYB0 RNU6-1046P-201ENST00000516538 107 ntBASIC-0.18□□□□□ -2.44
SHANK3Q9BYB0 Y_RNA.697-201ENST00000516776 113 ntBASIC-0.18□□□□□ -2.44
SHANK3Q9BYB0 RNU2-31P-201ENST00000516954 155 ntBASIC-0.18□□□□□ -2.44
SHANK3Q9BYB0 RNU4-58P-201ENST00000363192 141 ntBASIC-0.18□□□□□ -2.44
SHANK3Q9BYB0 SNORA18.1-201ENST00000363418 128 ntBASIC-0.18□□□□□ -2.44
SHANK3Q9BYB0 MIRLET7F2-201ENST00000385277 83 ntBASIC-0.18□□□□□ -2.44
SHANK3Q9BYB0 Y_RNA.581-201ENST00000391017 97 ntBASIC-0.18□□□□□ -2.44
SHANK3Q9BYB0 RNU6-1086P-201ENST00000410930 100 ntBASIC-0.18□□□□□ -2.44
SHANK3Q9BYB0 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC-0.18□□□□□ -2.44
SHANK3Q9BYB0 RPL39P34-201ENST00000477141 156 ntBASIC-0.18□□□□□ -2.44
SHANK3Q9BYB0 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC-0.18□□□□□ -2.44
SHANK3Q9BYB0 UBE2V2P2-201ENST00000587677 504 ntBASIC-0.18□□□□□ -2.44
SHANK3Q9BYB0 Y_RNA.152-201ENST00000363578 100 ntBASIC-0.19□□□□□ -2.44
SHANK3Q9BYB0 RNU6-1229P-201ENST00000364295 107 ntBASIC-0.19□□□□□ -2.44
SHANK3Q9BYB0 SNORD114-3-201ENST00000364969 75 ntBASIC-0.19□□□□□ -2.44
SHANK3Q9BYB0 RNU6-326P-201ENST00000365480 107 ntBASIC-0.19□□□□□ -2.44
SHANK3Q9BYB0 MIR626-201ENST00000385032 94 ntBASIC-0.19□□□□□ -2.44
SHANK3Q9BYB0 SNORA79-201ENST00000408376 140 ntBASIC-0.19□□□□□ -2.44
SHANK3Q9BYB0 Y_RNA.602-201ENST00000410535 92 ntBASIC-0.19□□□□□ -2.44
SHANK3Q9BYB0 MTND4LP11-201ENST00000422184 280 ntBASIC-0.19□□□□□ -2.44
SHANK3Q9BYB0 RNU6-507P-201ENST00000516045 100 ntBASIC-0.19□□□□□ -2.44
SHANK3Q9BYB0 SNORD36C-201ENST00000516733 66 ntBASIC-0.19□□□□□ -2.44
SHANK3Q9BYB0 Y_RNA.715-201ENST00000517082 110 ntBASIC-0.19□□□□□ -2.44
SHANK3Q9BYB0 AC006006.1-201ENST00000603082 144 ntBASIC-0.19□□□□□ -2.44
SHANK3Q9BYB0 AC097639.2-201ENST00000603159 172 ntBASIC-0.19□□□□□ -2.44
SHANK3Q9BYB0 AL162376.1-201ENST00000624117 175 ntBASIC-0.19□□□□□ -2.44
SHANK3Q9BYB0 MIR367-201ENST00000362299 68 ntBASIC-0.2□□□□□ -2.44
SHANK3Q9BYB0 Y_RNA.286-201ENST00000364813 102 ntBASIC-0.2□□□□□ -2.44
SHANK3Q9BYB0 Y_RNA.432-201ENST00000384087 111 ntBASIC-0.2□□□□□ -2.44
SHANK3Q9BYB0 Y_RNA.495-201ENST00000384435 112 ntBASIC-0.2□□□□□ -2.44
SHANK3Q9BYB0 SNORA20-201ENST00000384662 132 ntBASIC-0.2□□□□□ -2.44
SHANK3Q9BYB0 MIR215-201ENST00000384858 110 ntBASIC-0.2□□□□□ -2.44
SHANK3Q9BYB0 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC-0.2□□□□□ -2.44
SHANK3Q9BYB0 Y_RNA.619-201ENST00000410951 90 ntBASIC-0.2□□□□□ -2.44
SHANK3Q9BYB0 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC-0.2□□□□□ -2.44
SHANK3Q9BYB0 IGKV1-22-201ENST00000524313 326 ntBASIC-0.2□□□□□ -2.44
SHANK3Q9BYB0 MIR7107-201ENST00000611489 80 ntBASIC-0.2□□□□□ -2.44
SHANK3Q9BYB0 snoU18.1-201ENST00000629629 71 ntBASIC-0.2□□□□□ -2.44
SHANK3Q9BYB0 MIR1302-1-201ENST00000637932 143 ntBASIC-0.2□□□□□ -2.44
SHANK3Q9BYB0 Y_RNA.13-201ENST00000362403 112 ntBASIC-0.21□□□□□ -2.44
SHANK3Q9BYB0 RNU5E-4P-201ENST00000364931 120 ntBASIC-0.21□□□□□ -2.44
SHANK3Q9BYB0 Y_RNA.515-201ENST00000384535 112 ntBASIC-0.21□□□□□ -2.44
SHANK3Q9BYB0 RNU7-165P-201ENST00000458864 60 ntBASIC-0.21□□□□□ -2.44
SHANK3Q9BYB0 AP003072.1-201ENST00000531740 145 ntBASIC-0.21□□□□□ -2.44
SHANK3Q9BYB0 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC-0.21□□□□□ -2.44
SHANK3Q9BYB0 MIR8066-201ENST00000617280 78 ntBASIC-0.21□□□□□ -2.44
SHANK3Q9BYB0 AC091932.4-201ENST00000623386 200 ntBASIC-0.21□□□□□ -2.44
SHANK3Q9BYB0 SNORD114-5-201ENST00000362928 70 ntBASIC-0.21□□□□□ -2.44
SHANK3Q9BYB0 RNU6-726P-201ENST00000364680 107 ntBASIC-0.21□□□□□ -2.44
SHANK3Q9BYB0 Y_RNA.315-201ENST00000365117 102 ntBASIC-0.21□□□□□ -2.44
SHANK3Q9BYB0 SNORD114-12-201ENST00000365400 75 ntBASIC-0.21□□□□□ -2.44
SHANK3Q9BYB0 Y_RNA.440-201ENST00000384120 114 ntBASIC-0.21□□□□□ -2.44
SHANK3Q9BYB0 Y_RNA.539-201ENST00000384635 107 ntBASIC-0.21□□□□□ -2.44
SHANK3Q9BYB0 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.21□□□□□ -2.44
SHANK3Q9BYB0 Y_RNA.588-201ENST00000391254 102 ntBASIC-0.21□□□□□ -2.44
SHANK3Q9BYB0 Y_RNA.639-201ENST00000458981 102 ntBASIC-0.21□□□□□ -2.44
SHANK3Q9BYB0 Y_RNA.659-201ENST00000515994 113 ntBASIC-0.21□□□□□ -2.44
SHANK3Q9BYB0 RNU7-70P-201ENST00000516941 66 ntBASIC-0.21□□□□□ -2.44
SHANK3Q9BYB0 AL596211.1-201ENST00000569873 2277 ntBASIC-0.22□□□□□ -2.44
SHANK3Q9BYB0 RNU6-728P-201ENST00000365375 104 ntBASIC-0.22□□□□□ -2.44
SHANK3Q9BYB0 MT-TT-201ENST00000387460 66 ntBASIC-0.22□□□□□ -2.44
SHANK3Q9BYB0 RNU6-1228P-201ENST00000391014 107 ntBASIC-0.22□□□□□ -2.44
SHANK3Q9BYB0 MIR548H2-201ENST00000408874 88 ntBASIC-0.22□□□□□ -2.44
SHANK3Q9BYB0 AF228730.3-201ENST00000436691 102 ntBASIC-0.22□□□□□ -2.44
SHANK3Q9BYB0 MTND4P19-201ENST00000446659 478 ntBASIC-0.22□□□□□ -2.44
SHANK3Q9BYB0 SNORD19B-201ENST00000459623 84 ntBASIC-0.22□□□□□ -2.44
SHANK3Q9BYB0 PART1_1.1-201ENST00000611761 217 ntBASIC-0.22□□□□□ -2.44
SHANK3Q9BYB0 Y_RNA.804-201ENST00000615262 101 ntBASIC-0.22□□□□□ -2.44
SHANK3Q9BYB0 AC073869.9-201ENST00000641610 120 ntBASIC-0.22□□□□□ -2.44
SHANK3Q9BYB0 Y_RNA.154-201ENST00000363624 102 ntBASIC-0.23□□□□□ -2.45
SHANK3Q9BYB0 Y_RNA.304-201ENST00000365011 112 ntBASIC-0.23□□□□□ -2.45
SHANK3Q9BYB0 Y_RNA.380-201ENST00000365663 111 ntBASIC-0.23□□□□□ -2.45
SHANK3Q9BYB0 RNU4-63P-201ENST00000411313 118 ntBASIC-0.23□□□□□ -2.45
SHANK3Q9BYB0 AC096949.1-201ENST00000412047 152 ntBASIC-0.23□□□□□ -2.45
SHANK3Q9BYB0 RNU6ATAC22P-201ENST00000516794 89 ntBASIC-0.23□□□□□ -2.45
SHANK3Q9BYB0 RNU6-897P-201ENST00000517135 105 ntBASIC-0.23□□□□□ -2.45
SHANK3Q9BYB0 AC141846.1-201ENST00000568348 142 ntBASIC-0.23□□□□□ -2.45
SHANK3Q9BYB0 AL008718.3-201ENST00000610217 321 ntBASIC-0.23□□□□□ -2.45
SHANK3Q9BYB0 Y_RNA.217-201ENST00000364214 105 ntBASIC-0.24□□□□□ -2.45
SHANK3Q9BYB0 RNU6-290P-201ENST00000365212 101 ntBASIC-0.24□□□□□ -2.45
SHANK3Q9BYB0 PCNPP3-201ENST00000393579 471 ntBASIC-0.24□□□□□ -2.45
SHANK3Q9BYB0 Y_RNA.641-201ENST00000459414 105 ntBASIC-0.24□□□□□ -2.45
SHANK3Q9BYB0 RNU6-875P-201ENST00000516488 106 ntBASIC-0.24□□□□□ -2.45
SHANK3Q9BYB0 Y_RNA.721-201ENST00000517207 102 ntBASIC-0.24□□□□□ -2.45
SHANK3Q9BYB0 MIR548AD-201ENST00000584780 82 ntBASIC-0.24□□□□□ -2.45
SHANK3Q9BYB0 MIR101-2-201ENST00000362195 79 ntBASIC-0.24□□□□□ -2.45
SHANK3Q9BYB0 Y_RNA.199-201ENST00000364014 102 ntBASIC-0.24□□□□□ -2.45
SHANK3Q9BYB0 RNY1P13-201ENST00000365030 105 ntBASIC-0.24□□□□□ -2.45
SHANK3Q9BYB0 SNORA1-201ENST00000384107 130 ntBASIC-0.24□□□□□ -2.45
SHANK3Q9BYB0 Y_RNA.542-201ENST00000384641 111 ntBASIC-0.24□□□□□ -2.45
SHANK3Q9BYB0 RNU6-127P-201ENST00000390897 107 ntBASIC-0.24□□□□□ -2.45
SHANK3Q9BYB0 RNU6-823P-201ENST00000391042 103 ntBASIC-0.24□□□□□ -2.45
SHANK3Q9BYB0 Y_RNA.645-201ENST00000391229 102 ntBASIC-0.24□□□□□ -2.45
SHANK3Q9BYB0 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC-0.24□□□□□ -2.45
Retrieved 100 of 98,524 protein–RNA pairs in 455.2 ms