Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 SNORA22-201ENST00000383907 134 ntBASIC1.19□□□□□ -2.22
HERPUD2Q9BSE4 Y_RNA.494-201ENST00000384432 111 ntBASIC1.19□□□□□ -2.22
HERPUD2Q9BSE4 Y_RNA.547-201ENST00000384654 119 ntBASIC1.19□□□□□ -2.22
HERPUD2Q9BSE4 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.19□□□□□ -2.22
HERPUD2Q9BSE4 Y_RNA.692-201ENST00000516627 105 ntBASIC1.19□□□□□ -2.22
HERPUD2Q9BSE4 MIR4791-201ENST00000607666 84 ntBASIC1.19□□□□□ -2.22
HERPUD2Q9BSE4 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.18□□□□□ -2.22
HERPUD2Q9BSE4 MTND5P18-201ENST00000445624 1801 ntBASIC1.18□□□□□ -2.22
HERPUD2Q9BSE4 Y_RNA.549-201ENST00000384657 102 ntBASIC1.18□□□□□ -2.22
HERPUD2Q9BSE4 MIR1285-1-201ENST00000408593 84 ntBASIC1.18□□□□□ -2.22
HERPUD2Q9BSE4 RNA5SP89-201ENST00000410300 108 ntBASIC1.18□□□□□ -2.22
HERPUD2Q9BSE4 RNU2-70P-201ENST00000410718 179 ntBASIC1.18□□□□□ -2.22
HERPUD2Q9BSE4 RNA5SP127-201ENST00000411051 133 ntBASIC1.18□□□□□ -2.22
HERPUD2Q9BSE4 RN7SKP179-201ENST00000516126 217 ntBASIC1.18□□□□□ -2.22
HERPUD2Q9BSE4 RNU6-1270P-201ENST00000517128 108 ntBASIC1.18□□□□□ -2.22
HERPUD2Q9BSE4 AC023827.1-201ENST00000569247 97 ntBASIC1.18□□□□□ -2.22
HERPUD2Q9BSE4 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.18□□□□□ -2.22
HERPUD2Q9BSE4 RNU6-53P-201ENST00000365367 106 ntBASIC1.17□□□□□ -2.22
HERPUD2Q9BSE4 Y_RNA.366-201ENST00000365540 102 ntBASIC1.17□□□□□ -2.22
HERPUD2Q9BSE4 SNORD24-201ENST00000383884 75 ntBASIC1.17□□□□□ -2.22
HERPUD2Q9BSE4 RNU6-106P-201ENST00000384405 107 ntBASIC1.17□□□□□ -2.22
HERPUD2Q9BSE4 RNU6-1104P-201ENST00000384723 104 ntBASIC1.17□□□□□ -2.22
HERPUD2Q9BSE4 MIR548A1-201ENST00000385041 97 ntBASIC1.17□□□□□ -2.22
HERPUD2Q9BSE4 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.17□□□□□ -2.22
HERPUD2Q9BSE4 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.17□□□□□ -2.22
HERPUD2Q9BSE4 FABP5P4-201ENST00000437203 171 ntBASIC1.17□□□□□ -2.22
HERPUD2Q9BSE4 RNU6-1149P-201ENST00000516810 97 ntBASIC1.17□□□□□ -2.22
HERPUD2Q9BSE4 MTND5P34-201ENST00000568888 325 ntBASIC1.17□□□□□ -2.22
HERPUD2Q9BSE4 MIR8070-201ENST00000616510 88 ntBASIC1.17□□□□□ -2.22
HERPUD2Q9BSE4 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.17□□□□□ -2.22
HERPUD2Q9BSE4 RNU6-349P-201ENST00000362402 107 ntBASIC1.16□□□□□ -2.22
HERPUD2Q9BSE4 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC1.16□□□□□ -2.22
HERPUD2Q9BSE4 RNU6-693P-201ENST00000516134 107 ntBASIC1.16□□□□□ -2.22
HERPUD2Q9BSE4 RNU6-1061P-201ENST00000516530 99 ntBASIC1.16□□□□□ -2.22
HERPUD2Q9BSE4 RNU6-504P-201ENST00000516568 104 ntBASIC1.16□□□□□ -2.22
HERPUD2Q9BSE4 SNORD36C-201ENST00000516733 66 ntBASIC1.16□□□□□ -2.22
HERPUD2Q9BSE4 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.16□□□□□ -2.22
HERPUD2Q9BSE4 AL670379.3-201ENST00000605040 251 ntBASIC1.16□□□□□ -2.22
HERPUD2Q9BSE4 AC025166.1-201ENST00000612411 163 ntBASIC1.16□□□□□ -2.22
HERPUD2Q9BSE4 U6.95-201ENST00000636931 70 ntBASIC1.16□□□□□ -2.22
HERPUD2Q9BSE4 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.15□□□□□ -2.22
HERPUD2Q9BSE4 Y_RNA.43-201ENST00000362670 111 ntBASIC1.15□□□□□ -2.23
HERPUD2Q9BSE4 RNU6-1255P-201ENST00000363434 112 ntBASIC1.15□□□□□ -2.23
HERPUD2Q9BSE4 SNORD116-21-201ENST00000384507 92 ntBASIC1.15□□□□□ -2.23
HERPUD2Q9BSE4 SNORA26-201ENST00000391286 122 ntBASIC1.15□□□□□ -2.23
HERPUD2Q9BSE4 SNORA79-201ENST00000408376 140 ntBASIC1.15□□□□□ -2.23
HERPUD2Q9BSE4 RNU6-554P-201ENST00000410466 106 ntBASIC1.15□□□□□ -2.23
HERPUD2Q9BSE4 RNU6-537P-201ENST00000517277 103 ntBASIC1.15□□□□□ -2.23
HERPUD2Q9BSE4 AC133485.4-201ENST00000561835 220 ntBASIC1.15□□□□□ -2.23
HERPUD2Q9BSE4 AC138907.4-201ENST00000570107 226 ntBASIC1.15□□□□□ -2.23
HERPUD2Q9BSE4 MIR4679-2-201ENST00000578358 77 ntBASIC1.15□□□□□ -2.23
HERPUD2Q9BSE4 Y_RNA.757-201ENST00000578934 114 ntBASIC1.15□□□□□ -2.23
HERPUD2Q9BSE4 MIR5197-201ENST00000583721 112 ntBASIC1.15□□□□□ -2.23
HERPUD2Q9BSE4 AC243994.1-201ENST00000618627 109 ntBASIC1.15□□□□□ -2.23
HERPUD2Q9BSE4 AL035470.1-201ENST00000622571 220 ntBASIC1.15□□□□□ -2.23
HERPUD2Q9BSE4 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.15□□□□□ -2.23
HERPUD2Q9BSE4 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.14□□□□□ -2.23
HERPUD2Q9BSE4 MIR450A1-201ENST00000362262 91 ntBASIC1.14□□□□□ -2.23
HERPUD2Q9BSE4 RNU6-640P-201ENST00000363693 105 ntBASIC1.14□□□□□ -2.23
HERPUD2Q9BSE4 SNORD115-28-201ENST00000363931 81 ntBASIC1.14□□□□□ -2.23
HERPUD2Q9BSE4 RNU6-647P-201ENST00000364243 107 ntBASIC1.14□□□□□ -2.23
HERPUD2Q9BSE4 Y_RNA.241-201ENST00000364470 117 ntBASIC1.14□□□□□ -2.23
HERPUD2Q9BSE4 Y_RNA.281-201ENST00000364774 94 ntBASIC1.14□□□□□ -2.23
HERPUD2Q9BSE4 SNORA25.9-201ENST00000365087 128 ntBASIC1.14□□□□□ -2.23
HERPUD2Q9BSE4 RNU6-396P-201ENST00000365369 105 ntBASIC1.14□□□□□ -2.23
HERPUD2Q9BSE4 Y_RNA.440-201ENST00000384120 114 ntBASIC1.14□□□□□ -2.23
HERPUD2Q9BSE4 RNU6-905P-201ENST00000384434 107 ntBASIC1.14□□□□□ -2.23
HERPUD2Q9BSE4 Y_RNA.649-201ENST00000459077 103 ntBASIC1.14□□□□□ -2.23
HERPUD2Q9BSE4 RNU5E-3P-201ENST00000515913 68 ntBASIC1.14□□□□□ -2.23
HERPUD2Q9BSE4 RNU6-168P-201ENST00000516189 101 ntBASIC1.14□□□□□ -2.23
HERPUD2Q9BSE4 SNORA18.4-201ENST00000516440 124 ntBASIC1.14□□□□□ -2.23
HERPUD2Q9BSE4 MIR2115-201ENST00000516657 100 ntBASIC1.14□□□□□ -2.23
HERPUD2Q9BSE4 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.14□□□□□ -2.23
HERPUD2Q9BSE4 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.14□□□□□ -2.23
HERPUD2Q9BSE4 Y_RNA.37-201ENST00000362606 108 ntBASIC1.13□□□□□ -2.23
HERPUD2Q9BSE4 Y_RNA.348-201ENST00000365403 103 ntBASIC1.13□□□□□ -2.23
HERPUD2Q9BSE4 SNORD111-201ENST00000408139 94 ntBASIC1.13□□□□□ -2.23
HERPUD2Q9BSE4 MIR1263-201ENST00000408324 86 ntBASIC1.13□□□□□ -2.23
HERPUD2Q9BSE4 POLR2J4-204ENST00000418424 324 ntBASIC1.13□□□□□ -2.23
HERPUD2Q9BSE4 AC087499.4-201ENST00000448505 178 ntBASIC1.13□□□□□ -2.23
HERPUD2Q9BSE4 AC067940.1-201ENST00000458411 300 ntBASIC1.13□□□□□ -2.23
HERPUD2Q9BSE4 RNU7-67P-201ENST00000459003 62 ntBASIC1.13□□□□□ -2.23
HERPUD2Q9BSE4 MIR1270-201ENST00000459320 83 ntBASIC1.13□□□□□ -2.23
HERPUD2Q9BSE4 RNA5SP170-201ENST00000517150 101 ntBASIC1.13□□□□□ -2.23
HERPUD2Q9BSE4 uc_338.28-201ENST00000612082 187 ntBASIC1.13□□□□□ -2.23
HERPUD2Q9BSE4 Y_RNA.116-201ENST00000363292 103 ntBASIC1.12□□□□□ -2.23
HERPUD2Q9BSE4 Y_RNA.528-201ENST00000384575 108 ntBASIC1.12□□□□□ -2.23
HERPUD2Q9BSE4 MIR548A3-201ENST00000385297 97 ntBASIC1.12□□□□□ -2.23
HERPUD2Q9BSE4 RNA5SP247-201ENST00000411181 105 ntBASIC1.12□□□□□ -2.23
HERPUD2Q9BSE4 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.12□□□□□ -2.23
HERPUD2Q9BSE4 RNU6-240P-201ENST00000516098 97 ntBASIC1.12□□□□□ -2.23
HERPUD2Q9BSE4 RNU2-35P-201ENST00000516446 142 ntBASIC1.12□□□□□ -2.23
HERPUD2Q9BSE4 RNU6-1258P-201ENST00000516911 111 ntBASIC1.12□□□□□ -2.23
HERPUD2Q9BSE4 AC022523.2-201ENST00000561045 150 ntBASIC1.12□□□□□ -2.23
HERPUD2Q9BSE4 MIR5582-201ENST00000579697 68 ntBASIC1.12□□□□□ -2.23
HERPUD2Q9BSE4 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.12□□□□□ -2.23
HERPUD2Q9BSE4 SNORD114-21-201ENST00000606412 72 ntBASIC1.12□□□□□ -2.23
HERPUD2Q9BSE4 AL137067.1-201ENST00000615933 120 ntBASIC1.12□□□□□ -2.23
HERPUD2Q9BSE4 MIR6516-201ENST00000630554 81 ntBASIC1.12□□□□□ -2.23
HERPUD2Q9BSE4 Y_RNA.85-201ENST00000363014 111 ntBASIC1.11□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 174.2 ms