Protein–RNA interactions for Protein: Q9BRR0

ZKSCAN3, Zinc finger protein with KRAB and SCAN domains 3, humanhuman

Predictions only

Length 538 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZKSCAN3Q9BRR0 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
ZKSCAN3Q9BRR0 SNORD38B-202ENST00000625943 69 ntBASIC2.33□□□□□ -2.04
ZKSCAN3Q9BRR0 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
ZKSCAN3Q9BRR0 RNA5SP48-201ENST00000363969 126 ntBASIC2.32□□□□□ -2.04
ZKSCAN3Q9BRR0 RNA5SP173-201ENST00000364857 136 ntBASIC2.32□□□□□ -2.04
ZKSCAN3Q9BRR0 RNU6-717P-201ENST00000459076 104 ntBASIC2.32□□□□□ -2.04
ZKSCAN3Q9BRR0 snoU13.26-201ENST00000459452 105 ntBASIC2.32□□□□□ -2.04
ZKSCAN3Q9BRR0 RNU7-41P-201ENST00000515917 61 ntBASIC2.32□□□□□ -2.04
ZKSCAN3Q9BRR0 RNU7-79P-201ENST00000516082 62 ntBASIC2.32□□□□□ -2.04
ZKSCAN3Q9BRR0 SNORD111.1-201ENST00000516421 86 ntBASIC2.32□□□□□ -2.04
ZKSCAN3Q9BRR0 AC022254.1-201ENST00000567857 235 ntBASIC2.32□□□□□ -2.04
ZKSCAN3Q9BRR0 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC2.32□□□□□ -2.04
ZKSCAN3Q9BRR0 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC2.32□□□□□ -2.04
ZKSCAN3Q9BRR0 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.32□□□□□ -2.04
ZKSCAN3Q9BRR0 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.32□□□□□ -2.04
ZKSCAN3Q9BRR0 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
ZKSCAN3Q9BRR0 Y_RNA.17-201ENST00000362433 111 ntBASIC2.31□□□□□ -2.04
ZKSCAN3Q9BRR0 SNORD38.1-201ENST00000363863 68 ntBASIC2.31□□□□□ -2.04
ZKSCAN3Q9BRR0 Y_RNA.593-201ENST00000410292 98 ntBASIC2.31□□□□□ -2.04
ZKSCAN3Q9BRR0 RNU2-40P-201ENST00000410833 196 ntBASIC2.31□□□□□ -2.04
ZKSCAN3Q9BRR0 BTF3P4-201ENST00000418852 495 ntBASIC2.31□□□□□ -2.04
ZKSCAN3Q9BRR0 AC090844.1-201ENST00000422019 156 ntBASIC2.31□□□□□ -2.04
ZKSCAN3Q9BRR0 AC025033.1-201ENST00000463883 194 ntBASIC2.31□□□□□ -2.04
ZKSCAN3Q9BRR0 UBL5P1-201ENST00000507979 193 ntBASIC2.31□□□□□ -2.04
ZKSCAN3Q9BRR0 SNORD67.1-201ENST00000516618 108 ntBASIC2.31□□□□□ -2.04
ZKSCAN3Q9BRR0 MIR376B-201ENST00000614515 100 ntBASIC2.31□□□□□ -2.04
ZKSCAN3Q9BRR0 MIR494-201ENST00000349529 81 ntBASIC2.3□□□□□ -2.04
ZKSCAN3Q9BRR0 RNA5SP276-201ENST00000362580 94 ntBASIC2.3□□□□□ -2.04
ZKSCAN3Q9BRR0 SNORD114-10-201ENST00000363409 72 ntBASIC2.3□□□□□ -2.04
ZKSCAN3Q9BRR0 Y_RNA.467-201ENST00000384297 102 ntBASIC2.3□□□□□ -2.04
ZKSCAN3Q9BRR0 RNU6-447P-201ENST00000410293 104 ntBASIC2.3□□□□□ -2.04
ZKSCAN3Q9BRR0 RNU6-1118P-201ENST00000410382 104 ntBASIC2.3□□□□□ -2.04
ZKSCAN3Q9BRR0 RNU6-1076P-201ENST00000410397 104 ntBASIC2.3□□□□□ -2.04
ZKSCAN3Q9BRR0 RNU6-355P-201ENST00000410427 104 ntBASIC2.3□□□□□ -2.04
ZKSCAN3Q9BRR0 RNU6-791P-201ENST00000410467 104 ntBASIC2.3□□□□□ -2.04
ZKSCAN3Q9BRR0 RNA5SP338-201ENST00000410495 85 ntBASIC2.3□□□□□ -2.04
ZKSCAN3Q9BRR0 RNU6-705P-201ENST00000410601 104 ntBASIC2.3□□□□□ -2.04
ZKSCAN3Q9BRR0 RNU6-1100P-201ENST00000410691 104 ntBASIC2.3□□□□□ -2.04
ZKSCAN3Q9BRR0 RNU6-860P-201ENST00000410860 104 ntBASIC2.3□□□□□ -2.04
ZKSCAN3Q9BRR0 RNU6-1217P-201ENST00000411276 104 ntBASIC2.3□□□□□ -2.04
ZKSCAN3Q9BRR0 RNU6-785P-201ENST00000411324 104 ntBASIC2.3□□□□□ -2.04
ZKSCAN3Q9BRR0 RPL31P63-201ENST00000422565 375 ntBASIC2.3□□□□□ -2.04
ZKSCAN3Q9BRR0 AC003989.2-201ENST00000440224 169 ntBASIC2.3□□□□□ -2.04
ZKSCAN3Q9BRR0 RNU6-1006P-201ENST00000516998 103 ntBASIC2.3□□□□□ -2.04
ZKSCAN3Q9BRR0 U6.90-201ENST00000614007 104 ntBASIC2.3□□□□□ -2.04
ZKSCAN3Q9BRR0 U6.70-201ENST00000620287 104 ntBASIC2.3□□□□□ -2.04
ZKSCAN3Q9BRR0 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.3□□□□□ -2.04
ZKSCAN3Q9BRR0 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
ZKSCAN3Q9BRR0 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
ZKSCAN3Q9BRR0 Y_RNA.140-201ENST00000363474 103 ntBASIC2.29□□□□□ -2.04
ZKSCAN3Q9BRR0 RNU6-865P-201ENST00000364772 107 ntBASIC2.29□□□□□ -2.04
ZKSCAN3Q9BRR0 SNORA6-201ENST00000384033 151 ntBASIC2.29□□□□□ -2.04
ZKSCAN3Q9BRR0 Y_RNA.448-201ENST00000384185 108 ntBASIC2.29□□□□□ -2.04
ZKSCAN3Q9BRR0 RNU6-1152P-201ENST00000384576 107 ntBASIC2.29□□□□□ -2.04
ZKSCAN3Q9BRR0 RNU6-813P-201ENST00000384691 107 ntBASIC2.29□□□□□ -2.04
ZKSCAN3Q9BRR0 AL445685.2-201ENST00000422551 342 ntBASIC2.29□□□□□ -2.04
ZKSCAN3Q9BRR0 RPS29P28-201ENST00000446439 141 ntBASIC2.29□□□□□ -2.04
ZKSCAN3Q9BRR0 RNU1-40P-201ENST00000516816 164 ntBASIC2.29□□□□□ -2.04
ZKSCAN3Q9BRR0 RNU1-97P-201ENST00000516872 164 ntBASIC2.29□□□□□ -2.04
ZKSCAN3Q9BRR0 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
ZKSCAN3Q9BRR0 RNU6-1307P-201ENST00000391012 103 ntBASIC2.28□□□□□ -2.04
ZKSCAN3Q9BRR0 AC109327.2-201ENST00000448339 378 ntBASIC2.28□□□□□ -2.04
ZKSCAN3Q9BRR0 AC009474.2-201ENST00000451383 136 ntBASIC2.28□□□□□ -2.04
ZKSCAN3Q9BRR0 RNU7-137P-201ENST00000516788 62 ntBASIC2.28□□□□□ -2.04
ZKSCAN3Q9BRR0 AP003327.1-201ENST00000529684 127 ntBASIC2.28□□□□□ -2.04
ZKSCAN3Q9BRR0 AL357312.1-201ENST00000603879 298 ntBASIC2.28□□□□□ -2.04
ZKSCAN3Q9BRR0 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC2.28□□□□□ -2.04
ZKSCAN3Q9BRR0 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
ZKSCAN3Q9BRR0 RNY1P10-201ENST00000363268 113 ntBASIC2.27□□□□□ -2.05
ZKSCAN3Q9BRR0 Y_RNA.247-201ENST00000364500 92 ntBASIC2.27□□□□□ -2.05
ZKSCAN3Q9BRR0 RNU6-439P-201ENST00000384188 106 ntBASIC2.27□□□□□ -2.05
ZKSCAN3Q9BRR0 MIR34C-201ENST00000384831 77 ntBASIC2.27□□□□□ -2.05
ZKSCAN3Q9BRR0 SNORD41-201ENST00000386967 70 ntBASIC2.27□□□□□ -2.05
ZKSCAN3Q9BRR0 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
ZKSCAN3Q9BRR0 RNA5SP237-201ENST00000410414 113 ntBASIC2.27□□□□□ -2.05
ZKSCAN3Q9BRR0 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.27□□□□□ -2.05
ZKSCAN3Q9BRR0 AP000553.5-201ENST00000641933 54 ntBASIC2.27□□□□□ -2.05
ZKSCAN3Q9BRR0 SNORD116-10-201ENST00000363791 102 ntBASIC2.26□□□□□ -2.05
ZKSCAN3Q9BRR0 RNA5SP37-201ENST00000365420 130 ntBASIC2.26□□□□□ -2.05
ZKSCAN3Q9BRR0 AC019129.1-201ENST00000403786 261 ntBASIC2.26□□□□□ -2.05
ZKSCAN3Q9BRR0 AC244636.1-201ENST00000421152 228 ntBASIC2.26□□□□□ -2.05
ZKSCAN3Q9BRR0 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.26□□□□□ -2.05
ZKSCAN3Q9BRR0 AC090255.1-201ENST00000495779 349 ntBASIC2.26□□□□□ -2.05
ZKSCAN3Q9BRR0 RNU6-922P-201ENST00000516753 99 ntBASIC2.26□□□□□ -2.05
ZKSCAN3Q9BRR0 MIR6840-201ENST00000611937 71 ntBASIC2.26□□□□□ -2.05
ZKSCAN3Q9BRR0 SNORD116-22-201ENST00000384430 92 ntBASIC2.25□□□□□ -2.05
ZKSCAN3Q9BRR0 RNU6-1237P-201ENST00000384777 107 ntBASIC2.25□□□□□ -2.05
ZKSCAN3Q9BRR0 RNU6-1321P-201ENST00000390905 107 ntBASIC2.25□□□□□ -2.05
ZKSCAN3Q9BRR0 U8.15-201ENST00000390947 134 ntBASIC2.25□□□□□ -2.05
ZKSCAN3Q9BRR0 RNU7-48P-201ENST00000458875 63 ntBASIC2.25□□□□□ -2.05
ZKSCAN3Q9BRR0 AL773524.1-201ENST00000614065 229 ntBASIC2.25□□□□□ -2.05
ZKSCAN3Q9BRR0 IGLL4P-201ENST00000614590 133 ntBASIC2.25□□□□□ -2.05
ZKSCAN3Q9BRR0 MIR1245B-201ENST00000636115 69 ntBASIC2.25□□□□□ -2.05
ZKSCAN3Q9BRR0 Y_RNA.98-201ENST00000363109 102 ntBASIC2.24□□□□□ -2.05
ZKSCAN3Q9BRR0 Y_RNA.190-201ENST00000363964 101 ntBASIC2.24□□□□□ -2.05
ZKSCAN3Q9BRR0 RNY1P1-201ENST00000364372 112 ntBASIC2.24□□□□□ -2.05
ZKSCAN3Q9BRR0 RNU6-573P-201ENST00000383938 106 ntBASIC2.24□□□□□ -2.05
ZKSCAN3Q9BRR0 SNORD38.2-201ENST00000384470 69 ntBASIC2.24□□□□□ -2.05
ZKSCAN3Q9BRR0 SNORA40.18-201ENST00000391200 128 ntBASIC2.24□□□□□ -2.05
ZKSCAN3Q9BRR0 RNU6-592P-201ENST00000411333 103 ntBASIC2.24□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 276 ms