Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.27□□□□□ -2.21
CHMP4CQ96CF2 Y_RNA.690-201ENST00000516603 95 ntBASIC1.27□□□□□ -2.21
CHMP4CQ96CF2 MIR548X2-201ENST00000579776 100 ntBASIC1.27□□□□□ -2.21
CHMP4CQ96CF2 MIR6767-201ENST00000637302 66 ntBASIC1.27□□□□□ -2.21
CHMP4CQ96CF2 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.26□□□□□ -2.21
CHMP4CQ96CF2 RNY1P11-201ENST00000363759 113 ntBASIC1.26□□□□□ -2.21
CHMP4CQ96CF2 MIR520E-201ENST00000384867 87 ntBASIC1.26□□□□□ -2.21
CHMP4CQ96CF2 SNORD12C-201ENST00000386307 89 ntBASIC1.26□□□□□ -2.21
CHMP4CQ96CF2 snoU13.2-201ENST00000459201 104 ntBASIC1.26□□□□□ -2.21
CHMP4CQ96CF2 RNU2-60P-201ENST00000517290 128 ntBASIC1.26□□□□□ -2.21
CHMP4CQ96CF2 MTND5P41-201ENST00000517498 206 ntBASIC1.26□□□□□ -2.21
CHMP4CQ96CF2 MIR4452-201ENST00000583004 71 ntBASIC1.26□□□□□ -2.21
CHMP4CQ96CF2 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.25□□□□□ -2.21
CHMP4CQ96CF2 RNU6-349P-201ENST00000362402 107 ntBASIC1.25□□□□□ -2.21
CHMP4CQ96CF2 Y_RNA.191-201ENST00000363972 113 ntBASIC1.25□□□□□ -2.21
CHMP4CQ96CF2 AL603914.1-201ENST00000401964 204 ntBASIC1.25□□□□□ -2.21
CHMP4CQ96CF2 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.25□□□□□ -2.21
CHMP4CQ96CF2 RPS29P1-201ENST00000465274 159 ntBASIC1.25□□□□□ -2.21
CHMP4CQ96CF2 RNU5E-3P-201ENST00000515913 68 ntBASIC1.25□□□□□ -2.21
CHMP4CQ96CF2 RNU6-113P-201ENST00000516653 101 ntBASIC1.25□□□□□ -2.21
CHMP4CQ96CF2 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.25□□□□□ -2.21
CHMP4CQ96CF2 MIR6841-201ENST00000637129 72 ntBASIC1.25□□□□□ -2.21
CHMP4CQ96CF2 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
CHMP4CQ96CF2 Y_RNA.215-201ENST00000364204 112 ntBASIC1.24□□□□□ -2.21
CHMP4CQ96CF2 Y_RNA.355-201ENST00000365462 98 ntBASIC1.24□□□□□ -2.21
CHMP4CQ96CF2 RNU6-1165P-201ENST00000410119 107 ntBASIC1.24□□□□□ -2.21
CHMP4CQ96CF2 RNA5SP237-201ENST00000410414 113 ntBASIC1.24□□□□□ -2.21
CHMP4CQ96CF2 AL022718.1-201ENST00000412004 84 ntBASIC1.24□□□□□ -2.21
CHMP4CQ96CF2 PDCD5P2-201ENST00000507570 312 ntBASIC1.24□□□□□ -2.21
CHMP4CQ96CF2 Y_RNA.686-201ENST00000516548 134 ntBASIC1.24□□□□□ -2.21
CHMP4CQ96CF2 AL136317.1-201ENST00000612653 226 ntBASIC1.24□□□□□ -2.21
CHMP4CQ96CF2 MIR6740-201ENST00000618268 113 ntBASIC1.24□□□□□ -2.21
CHMP4CQ96CF2 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.23□□□□□ -2.21
CHMP4CQ96CF2 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.23□□□□□ -2.21
CHMP4CQ96CF2 Y_RNA.170-201ENST00000363746 110 ntBASIC1.23□□□□□ -2.21
CHMP4CQ96CF2 RNU6-460P-201ENST00000391158 108 ntBASIC1.23□□□□□ -2.21
CHMP4CQ96CF2 RNU7-197P-201ENST00000458836 62 ntBASIC1.23□□□□□ -2.21
CHMP4CQ96CF2 RNU6-1212P-201ENST00000517023 104 ntBASIC1.23□□□□□ -2.21
CHMP4CQ96CF2 AC133485.4-201ENST00000561835 220 ntBASIC1.23□□□□□ -2.21
CHMP4CQ96CF2 AC138907.4-201ENST00000570107 226 ntBASIC1.23□□□□□ -2.21
CHMP4CQ96CF2 AC103810.9-201ENST00000606688 112 ntBASIC1.23□□□□□ -2.21
CHMP4CQ96CF2 AC010332.2-201ENST00000613083 1904 ntBASIC1.23□□□□□ -2.21
CHMP4CQ96CF2 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC1.22□□□□□ -2.21
CHMP4CQ96CF2 RNU6-934P-201ENST00000365154 107 ntBASIC1.22□□□□□ -2.21
CHMP4CQ96CF2 SNORA22-201ENST00000383907 134 ntBASIC1.22□□□□□ -2.21
CHMP4CQ96CF2 Y_RNA.488-201ENST00000384403 102 ntBASIC1.22□□□□□ -2.21
CHMP4CQ96CF2 SNORA22C-201ENST00000384614 134 ntBASIC1.22□□□□□ -2.21
CHMP4CQ96CF2 RNA5SP144-201ENST00000410846 116 ntBASIC1.22□□□□□ -2.21
CHMP4CQ96CF2 RNU6-240P-201ENST00000516098 97 ntBASIC1.22□□□□□ -2.21
CHMP4CQ96CF2 MIR4661-201ENST00000582720 75 ntBASIC1.22□□□□□ -2.21
CHMP4CQ96CF2 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.21□□□□□ -2.21
CHMP4CQ96CF2 MIR1-1-201ENST00000362147 71 ntBASIC1.21□□□□□ -2.22
CHMP4CQ96CF2 RNU6-915P-201ENST00000364943 103 ntBASIC1.21□□□□□ -2.22
CHMP4CQ96CF2 MIR100-201ENST00000385259 80 ntBASIC1.21□□□□□ -2.22
CHMP4CQ96CF2 SNORD89-201ENST00000390981 114 ntBASIC1.21□□□□□ -2.22
CHMP4CQ96CF2 MIR548I1-201ENST00000408810 149 ntBASIC1.21□□□□□ -2.22
CHMP4CQ96CF2 SNORD83.1-201ENST00000411362 77 ntBASIC1.21□□□□□ -2.22
CHMP4CQ96CF2 RPL39P25-201ENST00000449384 154 ntBASIC1.21□□□□□ -2.22
CHMP4CQ96CF2 snoU13.18-201ENST00000459483 104 ntBASIC1.21□□□□□ -2.22
CHMP4CQ96CF2 UBL5P1-201ENST00000507979 193 ntBASIC1.21□□□□□ -2.22
CHMP4CQ96CF2 Y_RNA.692-201ENST00000516627 105 ntBASIC1.21□□□□□ -2.22
CHMP4CQ96CF2 AP001328.1-201ENST00000528550 176 ntBASIC1.21□□□□□ -2.22
CHMP4CQ96CF2 AC021443.1-201ENST00000604478 211 ntBASIC1.21□□□□□ -2.22
CHMP4CQ96CF2 AL391516.1-201ENST00000554380 2449 ntBASIC1.2□□□□□ -2.22
CHMP4CQ96CF2 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
CHMP4CQ96CF2 RNU6-309P-201ENST00000364573 106 ntBASIC1.2□□□□□ -2.22
CHMP4CQ96CF2 RNU6-1237P-201ENST00000384777 107 ntBASIC1.2□□□□□ -2.22
CHMP4CQ96CF2 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.2□□□□□ -2.22
CHMP4CQ96CF2 POLR2J4-204ENST00000418424 324 ntBASIC1.2□□□□□ -2.22
CHMP4CQ96CF2 MIR18B-201ENST00000454574 71 ntBASIC1.2□□□□□ -2.22
CHMP4CQ96CF2 RNU7-113P-201ENST00000459273 62 ntBASIC1.2□□□□□ -2.22
CHMP4CQ96CF2 U7.7-201ENST00000459276 60 ntBASIC1.2□□□□□ -2.22
CHMP4CQ96CF2 snoU13.21-201ENST00000459368 105 ntBASIC1.2□□□□□ -2.22
CHMP4CQ96CF2 OR2A41P-201ENST00000473586 105 ntBASIC1.2□□□□□ -2.22
CHMP4CQ96CF2 AC113410.1-201ENST00000505029 247 ntBASIC1.2□□□□□ -2.22
CHMP4CQ96CF2 RNU7-200P-201ENST00000516105 62 ntBASIC1.2□□□□□ -2.22
CHMP4CQ96CF2 MIR4771-2-201ENST00000577758 74 ntBASIC1.2□□□□□ -2.22
CHMP4CQ96CF2 MIR4698-201ENST00000577795 80 ntBASIC1.2□□□□□ -2.22
CHMP4CQ96CF2 Y_RNA.757-201ENST00000578934 114 ntBASIC1.2□□□□□ -2.22
CHMP4CQ96CF2 MIR4771-1-201ENST00000582617 74 ntBASIC1.2□□□□□ -2.22
CHMP4CQ96CF2 MIR4305-201ENST00000583252 102 ntBASIC1.2□□□□□ -2.22
CHMP4CQ96CF2 RNU1-93P-201ENST00000364704 169 ntBASIC1.19□□□□□ -2.22
CHMP4CQ96CF2 Y_RNA.420-201ENST00000384043 110 ntBASIC1.19□□□□□ -2.22
CHMP4CQ96CF2 MIR569-201ENST00000385228 96 ntBASIC1.19□□□□□ -2.22
CHMP4CQ96CF2 MT-TR-201ENST00000387439 65 ntBASIC1.19□□□□□ -2.22
CHMP4CQ96CF2 Y_RNA.651-201ENST00000459380 103 ntBASIC1.19□□□□□ -2.22
CHMP4CQ96CF2 RNU6-1110P-201ENST00000516462 101 ntBASIC1.19□□□□□ -2.22
CHMP4CQ96CF2 RNU6-255P-201ENST00000516957 105 ntBASIC1.19□□□□□ -2.22
CHMP4CQ96CF2 MIR7111-201ENST00000619751 72 ntBASIC1.19□□□□□ -2.22
CHMP4CQ96CF2 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
CHMP4CQ96CF2 Y_RNA.343-201ENST00000365354 112 ntBASIC1.18□□□□□ -2.22
CHMP4CQ96CF2 MT-TF-201ENST00000387314 71 ntBASIC1.18□□□□□ -2.22
CHMP4CQ96CF2 MIR1827-201ENST00000408549 66 ntBASIC1.18□□□□□ -2.22
CHMP4CQ96CF2 RPS26P5-201ENST00000418544 335 ntBASIC1.18□□□□□ -2.22
CHMP4CQ96CF2 RPL39P28-201ENST00000465655 155 ntBASIC1.18□□□□□ -2.22
CHMP4CQ96CF2 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.18□□□□□ -2.22
CHMP4CQ96CF2 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.18□□□□□ -2.22
CHMP4CQ96CF2 RNU6-508P-201ENST00000363231 103 ntBASIC1.17□□□□□ -2.22
CHMP4CQ96CF2 Y_RNA.118-201ENST00000363300 101 ntBASIC1.17□□□□□ -2.22
CHMP4CQ96CF2 Y_RNA.171-201ENST00000363760 102 ntBASIC1.17□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 191.5 ms