Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 SNORA1.1-201ENST00000364671 133 ntBASIC1.51□□□□□ -2.17
VPS53Q5VIR6 Y_RNA.353-201ENST00000365440 108 ntBASIC1.51□□□□□ -2.17
VPS53Q5VIR6 MIR1263-201ENST00000408324 86 ntBASIC1.51□□□□□ -2.17
VPS53Q5VIR6 RNU6-1190P-201ENST00000410811 104 ntBASIC1.51□□□□□ -2.17
VPS53Q5VIR6 Y_RNA.630-201ENST00000411370 108 ntBASIC1.51□□□□□ -2.17
VPS53Q5VIR6 AL022718.1-201ENST00000412004 84 ntBASIC1.51□□□□□ -2.17
VPS53Q5VIR6 POLR2J4-204ENST00000418424 324 ntBASIC1.51□□□□□ -2.17
VPS53Q5VIR6 RNU7-123P-201ENST00000515911 60 ntBASIC1.51□□□□□ -2.17
VPS53Q5VIR6 RNY4P20-201ENST00000516678 93 ntBASIC1.51□□□□□ -2.17
VPS53Q5VIR6 AL353770.2-201ENST00000620024 78 ntBASIC1.51□□□□□ -2.17
VPS53Q5VIR6 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
VPS53Q5VIR6 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
VPS53Q5VIR6 MIR26B-201ENST00000362251 77 ntBASIC1.5□□□□□ -2.17
VPS53Q5VIR6 SNORA22.1-201ENST00000362701 134 ntBASIC1.5□□□□□ -2.17
VPS53Q5VIR6 Y_RNA.528-201ENST00000384575 108 ntBASIC1.5□□□□□ -2.17
VPS53Q5VIR6 RPS3AP1-201ENST00000413190 320 ntBASIC1.5□□□□□ -2.17
VPS53Q5VIR6 AL133373.1-201ENST00000497098 94 ntBASIC1.5□□□□□ -2.17
VPS53Q5VIR6 RNU2-35P-201ENST00000516446 142 ntBASIC1.5□□□□□ -2.17
VPS53Q5VIR6 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.5□□□□□ -2.17
VPS53Q5VIR6 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
VPS53Q5VIR6 MTND5P18-201ENST00000445624 1801 ntBASIC1.5□□□□□ -2.17
VPS53Q5VIR6 Y_RNA.198-201ENST00000364013 98 ntBASIC1.49□□□□□ -2.17
VPS53Q5VIR6 RNU6-955P-201ENST00000410497 104 ntBASIC1.49□□□□□ -2.17
VPS53Q5VIR6 HMGN1P33-201ENST00000432945 451 ntBASIC1.49□□□□□ -2.17
VPS53Q5VIR6 RNU6-165P-201ENST00000517170 99 ntBASIC1.49□□□□□ -2.17
VPS53Q5VIR6 AP003716.2-201ENST00000528260 108 ntBASIC1.49□□□□□ -2.17
VPS53Q5VIR6 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.49□□□□□ -2.17
VPS53Q5VIR6 SNORD115-2-201ENST00000362842 82 ntBASIC1.48□□□□□ -2.17
VPS53Q5VIR6 RNU6-1290P-201ENST00000362957 109 ntBASIC1.48□□□□□ -2.17
VPS53Q5VIR6 SNORD115-20-201ENST00000365099 82 ntBASIC1.48□□□□□ -2.17
VPS53Q5VIR6 Y_RNA.327-201ENST00000365201 102 ntBASIC1.48□□□□□ -2.17
VPS53Q5VIR6 Y_RNA.354-201ENST00000365448 111 ntBASIC1.48□□□□□ -2.17
VPS53Q5VIR6 RNU6-735P-201ENST00000410612 107 ntBASIC1.48□□□□□ -2.17
VPS53Q5VIR6 snoU13.25-201ENST00000458945 104 ntBASIC1.48□□□□□ -2.17
VPS53Q5VIR6 SNORD33.1-201ENST00000516213 88 ntBASIC1.48□□□□□ -2.17
VPS53Q5VIR6 RNU6-947P-201ENST00000516264 106 ntBASIC1.48□□□□□ -2.17
VPS53Q5VIR6 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.48□□□□□ -2.17
VPS53Q5VIR6 MIR6078-201ENST00000611069 100 ntBASIC1.48□□□□□ -2.17
VPS53Q5VIR6 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.47□□□□□ -2.17
VPS53Q5VIR6 Y_RNA.213-201ENST00000364178 111 ntBASIC1.47□□□□□ -2.17
VPS53Q5VIR6 SNORA25.8-201ENST00000364831 128 ntBASIC1.47□□□□□ -2.17
VPS53Q5VIR6 RNU6-53P-201ENST00000365367 106 ntBASIC1.47□□□□□ -2.17
VPS53Q5VIR6 MIR1302-7-201ENST00000408841 72 ntBASIC1.47□□□□□ -2.17
VPS53Q5VIR6 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.47□□□□□ -2.17
VPS53Q5VIR6 TRMT112P2-201ENST00000512910 132 ntBASIC1.47□□□□□ -2.17
VPS53Q5VIR6 RNU11-2P-201ENST00000516898 142 ntBASIC1.47□□□□□ -2.17
VPS53Q5VIR6 AC004812.1-201ENST00000540773 146 ntBASIC1.47□□□□□ -2.17
VPS53Q5VIR6 AC019288.1-201ENST00000557918 224 ntBASIC1.47□□□□□ -2.17
VPS53Q5VIR6 AL670379.3-201ENST00000605040 251 ntBASIC1.47□□□□□ -2.17
VPS53Q5VIR6 AL359821.1-201ENST00000605519 182 ntBASIC1.47□□□□□ -2.17
VPS53Q5VIR6 RNU6-1056P-201ENST00000383996 107 ntBASIC1.46□□□□□ -2.18
VPS53Q5VIR6 Y_RNA.531-201ENST00000384589 121 ntBASIC1.46□□□□□ -2.18
VPS53Q5VIR6 RNU6-476P-201ENST00000384726 107 ntBASIC1.46□□□□□ -2.18
VPS53Q5VIR6 RNU6-1064P-201ENST00000410626 104 ntBASIC1.46□□□□□ -2.18
VPS53Q5VIR6 RNU6-602P-201ENST00000411155 105 ntBASIC1.46□□□□□ -2.18
VPS53Q5VIR6 RNU6-1054P-201ENST00000411293 104 ntBASIC1.46□□□□□ -2.18
VPS53Q5VIR6 AC113410.1-201ENST00000505029 247 ntBASIC1.46□□□□□ -2.18
VPS53Q5VIR6 Y_RNA.164-201ENST00000363709 102 ntBASIC1.45□□□□□ -2.18
VPS53Q5VIR6 Y_RNA.299-201ENST00000364973 94 ntBASIC1.45□□□□□ -2.18
VPS53Q5VIR6 RNU6-1144P-201ENST00000384247 104 ntBASIC1.45□□□□□ -2.18
VPS53Q5VIR6 SNORD38B-201ENST00000384690 67 ntBASIC1.45□□□□□ -2.18
VPS53Q5VIR6 MIR759-201ENST00000390224 91 ntBASIC1.45□□□□□ -2.18
VPS53Q5VIR6 AL512326.2-201ENST00000426359 151 ntBASIC1.45□□□□□ -2.18
VPS53Q5VIR6 AC245047.7-201ENST00000440265 293 ntBASIC1.45□□□□□ -2.18
VPS53Q5VIR6 RNU7-113P-201ENST00000459273 62 ntBASIC1.45□□□□□ -2.18
VPS53Q5VIR6 RNU6-1258P-201ENST00000516911 111 ntBASIC1.45□□□□□ -2.18
VPS53Q5VIR6 SNORD38B-202ENST00000625943 69 ntBASIC1.45□□□□□ -2.18
VPS53Q5VIR6 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.44□□□□□ -2.18
VPS53Q5VIR6 RNA5SP264-201ENST00000363115 107 ntBASIC1.44□□□□□ -2.18
VPS53Q5VIR6 Y_RNA.171-201ENST00000363760 102 ntBASIC1.44□□□□□ -2.18
VPS53Q5VIR6 RNU6-396P-201ENST00000365369 105 ntBASIC1.44□□□□□ -2.18
VPS53Q5VIR6 MIR548A3-201ENST00000385297 97 ntBASIC1.44□□□□□ -2.18
VPS53Q5VIR6 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC1.44□□□□□ -2.18
VPS53Q5VIR6 AC090844.1-201ENST00000422019 156 ntBASIC1.44□□□□□ -2.18
VPS53Q5VIR6 Y_RNA.649-201ENST00000459077 103 ntBASIC1.44□□□□□ -2.18
VPS53Q5VIR6 RPS23P4-201ENST00000487908 423 ntBASIC1.44□□□□□ -2.18
VPS53Q5VIR6 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.44□□□□□ -2.18
VPS53Q5VIR6 MIR2115-201ENST00000516657 100 ntBASIC1.44□□□□□ -2.18
VPS53Q5VIR6 PRELID3BP2-201ENST00000605362 201 ntBASIC1.44□□□□□ -2.18
VPS53Q5VIR6 RNA5SP327-201ENST00000362494 101 ntBASIC1.43□□□□□ -2.18
VPS53Q5VIR6 SNORA25.3-201ENST00000363205 127 ntBASIC1.43□□□□□ -2.18
VPS53Q5VIR6 RNU6-1104P-201ENST00000384723 104 ntBASIC1.43□□□□□ -2.18
VPS53Q5VIR6 MIR1185-1-201ENST00000408598 86 ntBASIC1.43□□□□□ -2.18
VPS53Q5VIR6 RNU6-321P-201ENST00000410912 106 ntBASIC1.43□□□□□ -2.18
VPS53Q5VIR6 MIR3163-201ENST00000581592 73 ntBASIC1.43□□□□□ -2.18
VPS53Q5VIR6 MIR103A2-201ENST00000362154 78 ntBASIC1.42□□□□□ -2.18
VPS53Q5VIR6 RNY4P6-201ENST00000363667 96 ntBASIC1.42□□□□□ -2.18
VPS53Q5VIR6 MT-TN-201ENST00000387400 73 ntBASIC1.42□□□□□ -2.18
VPS53Q5VIR6 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.42□□□□□ -2.18
VPS53Q5VIR6 AC022523.2-201ENST00000561045 150 ntBASIC1.42□□□□□ -2.18
VPS53Q5VIR6 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.41□□□□□ -2.18
VPS53Q5VIR6 MIR337-201ENST00000362281 93 ntBASIC1.41□□□□□ -2.18
VPS53Q5VIR6 MIR618-201ENST00000385287 98 ntBASIC1.41□□□□□ -2.18
VPS53Q5VIR6 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.41□□□□□ -2.18
VPS53Q5VIR6 MTND5P34-201ENST00000568888 325 ntBASIC1.41□□□□□ -2.18
VPS53Q5VIR6 MIR4264-201ENST00000583520 66 ntBASIC1.41□□□□□ -2.18
VPS53Q5VIR6 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
VPS53Q5VIR6 Y_RNA.470-201ENST00000384307 117 ntBASIC1.4□□□□□ -2.19
VPS53Q5VIR6 MT-TI-201ENST00000387365 69 ntBASIC1.4□□□□□ -2.19
VPS53Q5VIR6 RNU4-69P-201ENST00000410677 143 ntBASIC1.4□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms