Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 WWP1P1-201ENST00000466609 2769 ntBASIC1.99□□□□□ -2.09
RNF4P78317 Y_RNA.10-201ENST00000362371 110 ntBASIC1.98□□□□□ -2.09
RNF4P78317 RNU6-170P-201ENST00000362832 104 ntBASIC1.98□□□□□ -2.09
RNF4P78317 SNORD115-35-201ENST00000365122 82 ntBASIC1.98□□□□□ -2.09
RNF4P78317 Y_RNA.342-201ENST00000365352 113 ntBASIC1.98□□□□□ -2.09
RNF4P78317 SNORA64-201ENST00000384674 134 ntBASIC1.98□□□□□ -2.09
RNF4P78317 snoU13.25-201ENST00000458945 104 ntBASIC1.98□□□□□ -2.09
RNF4P78317 RNU7-61P-201ENST00000515897 61 ntBASIC1.98□□□□□ -2.09
RNF4P78317 Y_RNA.659-201ENST00000515994 113 ntBASIC1.98□□□□□ -2.09
RNF4P78317 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.98□□□□□ -2.09
RNF4P78317 GHRLOS.1-201ENST00000610995 70 ntBASIC1.98□□□□□ -2.09
RNF4P78317 MALAT1.1-201ENST00000618249 95 ntBASIC1.98□□□□□ -2.09
RNF4P78317 AP000553.5-201ENST00000641933 54 ntBASIC1.98□□□□□ -2.09
RNF4P78317 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.98□□□□□ -2.09
RNF4P78317 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
RNF4P78317 RNA5SP37-201ENST00000365420 130 ntBASIC1.97□□□□□ -2.09
RNF4P78317 Y_RNA.448-201ENST00000384185 108 ntBASIC1.97□□□□□ -2.09
RNF4P78317 RNA5SP237-201ENST00000410414 113 ntBASIC1.97□□□□□ -2.09
RNF4P78317 snoU13.9-201ENST00000458927 103 ntBASIC1.97□□□□□ -2.09
RNF4P78317 AP000942.3-201ENST00000603702 160 ntBASIC1.97□□□□□ -2.09
RNF4P78317 PRELID3BP2-201ENST00000605362 201 ntBASIC1.97□□□□□ -2.09
RNF4P78317 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.97□□□□□ -2.09
RNF4P78317 MIR2052-201ENST00000636055 55 ntBASIC1.97□□□□□ -2.09
RNF4P78317 MIR219B-201ENST00000637023 88 ntBASIC1.97□□□□□ -2.09
RNF4P78317 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.96□□□□□ -2.1
RNF4P78317 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
RNF4P78317 RNU6-1313P-201ENST00000362622 102 ntBASIC1.96□□□□□ -2.1
RNF4P78317 Y_RNA.220-201ENST00000364244 109 ntBASIC1.96□□□□□ -2.1
RNF4P78317 Y_RNA.466-201ENST00000384294 113 ntBASIC1.96□□□□□ -2.1
RNF4P78317 MIR1302-7-201ENST00000408841 72 ntBASIC1.96□□□□□ -2.1
RNF4P78317 AC027119.1-201ENST00000440877 241 ntBASIC1.96□□□□□ -2.1
RNF4P78317 AC104435.1-201ENST00000483483 166 ntBASIC1.96□□□□□ -2.1
RNF4P78317 AC108729.3-201ENST00000513484 108 ntBASIC1.96□□□□□ -2.1
RNF4P78317 AL442128.1-201ENST00000615151 90 ntBASIC1.96□□□□□ -2.1
RNF4P78317 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
RNF4P78317 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.96□□□□□ -2.1
RNF4P78317 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.95□□□□□ -2.1
RNF4P78317 Y_RNA.247-201ENST00000364500 92 ntBASIC1.95□□□□□ -2.1
RNF4P78317 Y_RNA.377-201ENST00000365644 108 ntBASIC1.95□□□□□ -2.1
RNF4P78317 SNORA67.3-201ENST00000384366 140 ntBASIC1.95□□□□□ -2.1
RNF4P78317 RNU6-644P-201ENST00000391155 98 ntBASIC1.95□□□□□ -2.1
RNF4P78317 AC244023.1-201ENST00000426884 112 ntBASIC1.95□□□□□ -2.1
RNF4P78317 AC004941.2-201ENST00000427009 228 ntBASIC1.95□□□□□ -2.1
RNF4P78317 RPL39P39-201ENST00000455840 151 ntBASIC1.95□□□□□ -2.1
RNF4P78317 UBL5P1-201ENST00000507979 193 ntBASIC1.95□□□□□ -2.1
RNF4P78317 RNU6-1018P-201ENST00000516577 106 ntBASIC1.95□□□□□ -2.1
RNF4P78317 RNU7-137P-201ENST00000516788 62 ntBASIC1.95□□□□□ -2.1
RNF4P78317 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.95□□□□□ -2.1
RNF4P78317 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.95□□□□□ -2.1
RNF4P78317 AC242498.1-201ENST00000604134 111 ntBASIC1.95□□□□□ -2.1
RNF4P78317 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC1.95□□□□□ -2.1
RNF4P78317 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
RNF4P78317 MIR302D-201ENST00000362275 68 ntBASIC1.94□□□□□ -2.1
RNF4P78317 SNORD45B-201ENST00000364617 72 ntBASIC1.94□□□□□ -2.1
RNF4P78317 MIR34C-201ENST00000384831 77 ntBASIC1.94□□□□□ -2.1
RNF4P78317 MIR676-201ENST00000390702 67 ntBASIC1.94□□□□□ -2.1
RNF4P78317 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.94□□□□□ -2.1
RNF4P78317 HMGN2P19-201ENST00000425149 265 ntBASIC1.94□□□□□ -2.1
RNF4P78317 RNU6-162P-201ENST00000516228 103 ntBASIC1.94□□□□□ -2.1
RNF4P78317 RNA5SP364-201ENST00000516938 78 ntBASIC1.94□□□□□ -2.1
RNF4P78317 AC141846.1-201ENST00000568348 142 ntBASIC1.94□□□□□ -2.1
RNF4P78317 MIR376B-201ENST00000614515 100 ntBASIC1.94□□□□□ -2.1
RNF4P78317 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
RNF4P78317 RNU6-865P-201ENST00000364772 107 ntBASIC1.93□□□□□ -2.1
RNF4P78317 RNY1P13-201ENST00000365030 105 ntBASIC1.93□□□□□ -2.1
RNF4P78317 MIR30A-201ENST00000385092 71 ntBASIC1.93□□□□□ -2.1
RNF4P78317 RNU6-205P-201ENST00000390858 107 ntBASIC1.93□□□□□ -2.1
RNF4P78317 RNU6-1321P-201ENST00000390905 107 ntBASIC1.93□□□□□ -2.1
RNF4P78317 RPL23AP42-201ENST00000471152 471 ntBASIC1.93□□□□□ -2.1
RNF4P78317 MIR4298-201ENST00000584380 73 ntBASIC1.93□□□□□ -2.1
RNF4P78317 SNRPGP19-201ENST00000603826 189 ntBASIC1.93□□□□□ -2.1
RNF4P78317 AL161722.3-201ENST00000605789 2983 ntBASIC1.93□□□□□ -2.1
RNF4P78317 SNORD73B-201ENST00000364394 72 ntBASIC1.92□□□□□ -2.1
RNF4P78317 SNORD1A-201ENST00000364968 72 ntBASIC1.92□□□□□ -2.1
RNF4P78317 SNORA72.7-201ENST00000516349 94 ntBASIC1.92□□□□□ -2.1
RNF4P78317 MIR3937-201ENST00000580135 106 ntBASIC1.92□□□□□ -2.1
RNF4P78317 MIR4777-201ENST00000583710 86 ntBASIC1.92□□□□□ -2.1
RNF4P78317 MIR5002-201ENST00000584713 97 ntBASIC1.92□□□□□ -2.1
RNF4P78317 AL662814.1-201ENST00000617364 121 ntBASIC1.92□□□□□ -2.1
RNF4P78317 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
RNF4P78317 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
RNF4P78317 Y_RNA.95-201ENST00000363079 95 ntBASIC1.91□□□□□ -2.1
RNF4P78317 RNU6-60P-201ENST00000364792 103 ntBASIC1.91□□□□□ -2.1
RNF4P78317 Y_RNA.290-201ENST00000364879 114 ntBASIC1.91□□□□□ -2.1
RNF4P78317 Y_RNA.467-201ENST00000384297 102 ntBASIC1.91□□□□□ -2.1
RNF4P78317 MIR588-201ENST00000384900 83 ntBASIC1.91□□□□□ -2.1
RNF4P78317 MRPL35P3-201ENST00000421557 364 ntBASIC1.91□□□□□ -2.1
RNF4P78317 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
RNF4P78317 RPS29P28-201ENST00000446439 141 ntBASIC1.91□□□□□ -2.1
RNF4P78317 AC079140.2-201ENST00000506193 142 ntBASIC1.91□□□□□ -2.1
RNF4P78317 RNU6-762P-201ENST00000517107 102 ntBASIC1.91□□□□□ -2.1
RNF4P78317 RNU6-844P-201ENST00000517175 102 ntBASIC1.91□□□□□ -2.1
RNF4P78317 AC096720.1-201ENST00000604441 183 ntBASIC1.91□□□□□ -2.1
RNF4P78317 AC012493.3-201ENST00000604494 112 ntBASIC1.91□□□□□ -2.1
RNF4P78317 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC1.91□□□□□ -2.1
RNF4P78317 MIR6740-201ENST00000618268 113 ntBASIC1.91□□□□□ -2.1
RNF4P78317 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.91□□□□□ -2.1
RNF4P78317 MIR103A2-201ENST00000362154 78 ntBASIC1.9□□□□□ -2.11
RNF4P78317 SNORD114-10-201ENST00000363409 72 ntBASIC1.9□□□□□ -2.11
RNF4P78317 RNU6-396P-201ENST00000365369 105 ntBASIC1.9□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 182.4 ms