Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 MIR569-201ENST00000385228 96 ntBASIC1.11□□□□□ -2.23
HDAC4P56524 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.11□□□□□ -2.23
HDAC4P56524 Y_RNA.651-201ENST00000459380 103 ntBASIC1.11□□□□□ -2.23
HDAC4P56524 AC036111.3-201ENST00000526389 112 ntBASIC1.11□□□□□ -2.23
HDAC4P56524 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC1.11□□□□□ -2.23
HDAC4P56524 SNORD114-21-201ENST00000606412 72 ntBASIC1.11□□□□□ -2.23
HDAC4P56524 MIR6841-201ENST00000637129 72 ntBASIC1.11□□□□□ -2.23
HDAC4P56524 RNU6-1187P-201ENST00000364771 110 ntBASIC1.1□□□□□ -2.23
HDAC4P56524 RNU1-133P-201ENST00000364867 167 ntBASIC1.1□□□□□ -2.23
HDAC4P56524 RNU6-396P-201ENST00000365369 105 ntBASIC1.1□□□□□ -2.23
HDAC4P56524 Y_RNA.400-201ENST00000383963 111 ntBASIC1.1□□□□□ -2.23
HDAC4P56524 Y_RNA.454-201ENST00000384224 113 ntBASIC1.1□□□□□ -2.23
HDAC4P56524 RNU6-1319P-201ENST00000390855 104 ntBASIC1.1□□□□□ -2.23
HDAC4P56524 RNU6-747P-201ENST00000390928 104 ntBASIC1.1□□□□□ -2.23
HDAC4P56524 RNU6-241P-201ENST00000391148 104 ntBASIC1.1□□□□□ -2.23
HDAC4P56524 RNU6-460P-201ENST00000391158 108 ntBASIC1.1□□□□□ -2.23
HDAC4P56524 RNU6-177P-201ENST00000411257 104 ntBASIC1.1□□□□□ -2.23
HDAC4P56524 RPS23P4-201ENST00000487908 423 ntBASIC1.1□□□□□ -2.23
HDAC4P56524 RNU6-113P-201ENST00000516653 101 ntBASIC1.1□□□□□ -2.23
HDAC4P56524 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.1□□□□□ -2.23
HDAC4P56524 uc_338.6-201ENST00000613544 171 ntBASIC1.1□□□□□ -2.23
HDAC4P56524 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
HDAC4P56524 Y_RNA.215-201ENST00000364204 112 ntBASIC1.09□□□□□ -2.23
HDAC4P56524 RNU6-309P-201ENST00000364573 106 ntBASIC1.09□□□□□ -2.23
HDAC4P56524 SNORA1.1-201ENST00000364671 133 ntBASIC1.09□□□□□ -2.23
HDAC4P56524 RNU6-580P-201ENST00000365159 107 ntBASIC1.09□□□□□ -2.23
HDAC4P56524 MT-TN-201ENST00000387400 73 ntBASIC1.09□□□□□ -2.23
HDAC4P56524 Y_RNA.584-201ENST00000391090 114 ntBASIC1.09□□□□□ -2.23
HDAC4P56524 AC087343.1-201ENST00000477341 475 ntBASIC1.09□□□□□ -2.23
HDAC4P56524 RNU6-346P-201ENST00000516288 111 ntBASIC1.09□□□□□ -2.23
HDAC4P56524 AC023827.1-201ENST00000569247 97 ntBASIC1.09□□□□□ -2.23
HDAC4P56524 MIR4295-201ENST00000585286 85 ntBASIC1.09□□□□□ -2.23
HDAC4P56524 AC021613.1-201ENST00000623880 111 ntBASIC1.09□□□□□ -2.23
HDAC4P56524 MIR302B-201ENST00000362188 73 ntBASIC1.08□□□□□ -2.24
HDAC4P56524 RNU4-16P-201ENST00000364737 141 ntBASIC1.08□□□□□ -2.24
HDAC4P56524 Y_RNA.430-201ENST00000384081 110 ntBASIC1.08□□□□□ -2.24
HDAC4P56524 RNU6-205P-201ENST00000390858 107 ntBASIC1.08□□□□□ -2.24
HDAC4P56524 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1.08□□□□□ -2.24
HDAC4P56524 RNA5SP272-201ENST00000516095 111 ntBASIC1.08□□□□□ -2.24
HDAC4P56524 SNORA25.12-201ENST00000516202 82 ntBASIC1.08□□□□□ -2.24
HDAC4P56524 RNU6-1258P-201ENST00000516911 111 ntBASIC1.08□□□□□ -2.24
HDAC4P56524 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.08□□□□□ -2.24
HDAC4P56524 AC103810.9-201ENST00000606688 112 ntBASIC1.08□□□□□ -2.24
HDAC4P56524 AC012676.2-201ENST00000619258 186 ntBASIC1.08□□□□□ -2.24
HDAC4P56524 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC1.07□□□□□ -2.24
HDAC4P56524 MIR377-201ENST00000362145 69 ntBASIC1.07□□□□□ -2.24
HDAC4P56524 Y_RNA.120-201ENST00000363304 110 ntBASIC1.07□□□□□ -2.24
HDAC4P56524 RNY1P6-201ENST00000384193 109 ntBASIC1.07□□□□□ -2.24
HDAC4P56524 RNY1P4-201ENST00000384595 115 ntBASIC1.07□□□□□ -2.24
HDAC4P56524 MIR216A-201ENST00000385063 110 ntBASIC1.07□□□□□ -2.24
HDAC4P56524 SNORD12C-201ENST00000386307 89 ntBASIC1.07□□□□□ -2.24
HDAC4P56524 UBL5P1-201ENST00000507979 193 ntBASIC1.07□□□□□ -2.24
HDAC4P56524 MIR5000-201ENST00000577717 103 ntBASIC1.07□□□□□ -2.24
HDAC4P56524 MIR548X2-201ENST00000579776 100 ntBASIC1.07□□□□□ -2.24
HDAC4P56524 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1.07□□□□□ -2.24
HDAC4P56524 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.07□□□□□ -2.24
HDAC4P56524 AC106800.4-201ENST00000614905 153 ntBASIC1.07□□□□□ -2.24
HDAC4P56524 MIR6740-201ENST00000618268 113 ntBASIC1.07□□□□□ -2.24
HDAC4P56524 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
HDAC4P56524 Y_RNA.168-201ENST00000363740 102 ntBASIC1.06□□□□□ -2.24
HDAC4P56524 Y_RNA.178-201ENST00000363832 102 ntBASIC1.06□□□□□ -2.24
HDAC4P56524 RNY1P5-201ENST00000383890 115 ntBASIC1.06□□□□□ -2.24
HDAC4P56524 SNORA20-201ENST00000384662 132 ntBASIC1.06□□□□□ -2.24
HDAC4P56524 AL603914.1-201ENST00000401964 204 ntBASIC1.06□□□□□ -2.24
HDAC4P56524 snoU13.21-201ENST00000459368 105 ntBASIC1.06□□□□□ -2.24
HDAC4P56524 SNORD124-201ENST00000459577 104 ntBASIC1.06□□□□□ -2.24
HDAC4P56524 RNU7-70P-201ENST00000516941 66 ntBASIC1.06□□□□□ -2.24
HDAC4P56524 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC1.06□□□□□ -2.24
HDAC4P56524 MIR4264-201ENST00000583520 66 ntBASIC1.06□□□□□ -2.24
HDAC4P56524 AP000753.3-201ENST00000604083 169 ntBASIC1.06□□□□□ -2.24
HDAC4P56524 MIR6767-201ENST00000637302 66 ntBASIC1.06□□□□□ -2.24
HDAC4P56524 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
HDAC4P56524 AL391516.1-201ENST00000554380 2449 ntBASIC1.06□□□□□ -2.24
HDAC4P56524 RNU4-38P-201ENST00000364472 129 ntBASIC1.05□□□□□ -2.24
HDAC4P56524 SNORD38B-201ENST00000384690 67 ntBASIC1.05□□□□□ -2.24
HDAC4P56524 MIR200A-201ENST00000384875 90 ntBASIC1.05□□□□□ -2.24
HDAC4P56524 RPS3AP1-201ENST00000413190 320 ntBASIC1.05□□□□□ -2.24
HDAC4P56524 RNU6-426P-201ENST00000516464 97 ntBASIC1.05□□□□□ -2.24
HDAC4P56524 Y_RNA.690-201ENST00000516603 95 ntBASIC1.05□□□□□ -2.24
HDAC4P56524 AC108081.1-201ENST00000604358 221 ntBASIC1.05□□□□□ -2.24
HDAC4P56524 RNU6-94P-201ENST00000607728 107 ntBASIC1.05□□□□□ -2.24
HDAC4P56524 SNORD38B-202ENST00000625943 69 ntBASIC1.05□□□□□ -2.24
HDAC4P56524 SNORA22.1-201ENST00000362701 134 ntBASIC1.04□□□□□ -2.24
HDAC4P56524 SNORD113.3-201ENST00000364630 78 ntBASIC1.04□□□□□ -2.24
HDAC4P56524 RNU6-915P-201ENST00000364943 103 ntBASIC1.04□□□□□ -2.24
HDAC4P56524 SNORD114-24-201ENST00000365029 72 ntBASIC1.04□□□□□ -2.24
HDAC4P56524 RNU6-1062P-201ENST00000383908 107 ntBASIC1.04□□□□□ -2.24
HDAC4P56524 Y_RNA.420-201ENST00000384043 110 ntBASIC1.04□□□□□ -2.24
HDAC4P56524 MIR563-201ENST00000385080 79 ntBASIC1.04□□□□□ -2.24
HDAC4P56524 MIR513C-201ENST00000401352 84 ntBASIC1.04□□□□□ -2.24
HDAC4P56524 RNA5SP144-201ENST00000410846 116 ntBASIC1.04□□□□□ -2.24
HDAC4P56524 RPL39P28-201ENST00000465655 155 ntBASIC1.04□□□□□ -2.24
HDAC4P56524 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.04□□□□□ -2.24
HDAC4P56524 RNU6-240P-201ENST00000516098 97 ntBASIC1.04□□□□□ -2.24
HDAC4P56524 Y_RNA.757-201ENST00000578934 114 ntBASIC1.04□□□□□ -2.24
HDAC4P56524 MIR4661-201ENST00000582720 75 ntBASIC1.04□□□□□ -2.24
HDAC4P56524 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.04□□□□□ -2.24
HDAC4P56524 RNU6-369P-201ENST00000362515 102 ntBASIC1.03□□□□□ -2.24
HDAC4P56524 SNORA2B-201ENST00000384583 137 ntBASIC1.03□□□□□ -2.24
HDAC4P56524 SNORD111-201ENST00000408139 94 ntBASIC1.03□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 235.5 ms