Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.05□□□□□ -2.08
LIG3P49916 MIR590-201ENST00000385008 97 ntBASIC2.05□□□□□ -2.08
LIG3P49916 SNORA19.1-201ENST00000410656 129 ntBASIC2.05□□□□□ -2.08
LIG3P49916 SNORA7.5-201ENST00000410672 110 ntBASIC2.05□□□□□ -2.08
LIG3P49916 RPL31P63-201ENST00000422565 375 ntBASIC2.05□□□□□ -2.08
LIG3P49916 DEFB131E-201ENST00000532329 154 ntBASIC2.05□□□□□ -2.08
LIG3P49916 MIR4694-201ENST00000578534 80 ntBASIC2.05□□□□□ -2.08
LIG3P49916 SNRPGP19-201ENST00000603826 189 ntBASIC2.05□□□□□ -2.08
LIG3P49916 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.05□□□□□ -2.08
LIG3P49916 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
LIG3P49916 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
LIG3P49916 SNORA25.3-201ENST00000363205 127 ntBASIC2.04□□□□□ -2.08
LIG3P49916 RNU6-396P-201ENST00000365369 105 ntBASIC2.04□□□□□ -2.08
LIG3P49916 Y_RNA.360-201ENST00000365512 102 ntBASIC2.04□□□□□ -2.08
LIG3P49916 MIR676-201ENST00000390702 67 ntBASIC2.04□□□□□ -2.08
LIG3P49916 RNA5SP237-201ENST00000410414 113 ntBASIC2.04□□□□□ -2.08
LIG3P49916 RNU6-1086P-201ENST00000410930 100 ntBASIC2.04□□□□□ -2.08
LIG3P49916 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.04□□□□□ -2.08
LIG3P49916 AP001318.4-201ENST00000616637 121 ntBASIC2.04□□□□□ -2.08
LIG3P49916 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
LIG3P49916 Y_RNA.10-201ENST00000362371 110 ntBASIC2.03□□□□□ -2.08
LIG3P49916 RNY3P2-201ENST00000362918 102 ntBASIC2.03□□□□□ -2.08
LIG3P49916 AL133373.1-201ENST00000497098 94 ntBASIC2.03□□□□□ -2.08
LIG3P49916 MIR3122-201ENST00000577243 73 ntBASIC2.03□□□□□ -2.08
LIG3P49916 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.03□□□□□ -2.08
LIG3P49916 AP000942.3-201ENST00000603702 160 ntBASIC2.03□□□□□ -2.08
LIG3P49916 PRELID3BP2-201ENST00000605362 201 ntBASIC2.03□□□□□ -2.08
LIG3P49916 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.03□□□□□ -2.08
LIG3P49916 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.03□□□□□ -2.08
LIG3P49916 Y_RNA.43-201ENST00000362670 111 ntBASIC2.02□□□□□ -2.09
LIG3P49916 Y_RNA.348-201ENST00000365403 103 ntBASIC2.02□□□□□ -2.09
LIG3P49916 RNU6-1237P-201ENST00000384777 107 ntBASIC2.02□□□□□ -2.09
LIG3P49916 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.02□□□□□ -2.09
LIG3P49916 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.02□□□□□ -2.09
LIG3P49916 AC027119.1-201ENST00000440877 241 ntBASIC2.02□□□□□ -2.09
LIG3P49916 RNU7-79P-201ENST00000516082 62 ntBASIC2.02□□□□□ -2.09
LIG3P49916 SNORA40.13-201ENST00000516379 120 ntBASIC2.02□□□□□ -2.09
LIG3P49916 RNU6-521P-201ENST00000516663 105 ntBASIC2.02□□□□□ -2.09
LIG3P49916 RNU6-1099P-201ENST00000363533 107 ntBASIC2.01□□□□□ -2.09
LIG3P49916 MIR605-201ENST00000385078 83 ntBASIC2.01□□□□□ -2.09
LIG3P49916 MIR577-201ENST00000385196 96 ntBASIC2.01□□□□□ -2.09
LIG3P49916 RNU6-679P-201ENST00000391003 106 ntBASIC2.01□□□□□ -2.09
LIG3P49916 MIR1289-2-201ENST00000408360 111 ntBASIC2.01□□□□□ -2.09
LIG3P49916 MIR1302-7-201ENST00000408841 72 ntBASIC2.01□□□□□ -2.09
LIG3P49916 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC2.01□□□□□ -2.09
LIG3P49916 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC2.01□□□□□ -2.09
LIG3P49916 RNA5SP445-201ENST00000515889 115 ntBASIC2.01□□□□□ -2.09
LIG3P49916 RNU7-2P-201ENST00000516096 62 ntBASIC2.01□□□□□ -2.09
LIG3P49916 RNU6-109P-201ENST00000516364 107 ntBASIC2.01□□□□□ -2.09
LIG3P49916 RNU6-184P-201ENST00000516514 107 ntBASIC2.01□□□□□ -2.09
LIG3P49916 RNU6-1018P-201ENST00000516577 106 ntBASIC2.01□□□□□ -2.09
LIG3P49916 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC2.01□□□□□ -2.09
LIG3P49916 AP000753.3-201ENST00000604083 169 ntBASIC2.01□□□□□ -2.09
LIG3P49916 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.01□□□□□ -2.09
LIG3P49916 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
LIG3P49916 SNORD115-35-201ENST00000365122 82 ntBASIC2□□□□□ -2.09
LIG3P49916 MIR504-201ENST00000385065 83 ntBASIC2□□□□□ -2.09
LIG3P49916 MIR2115-201ENST00000516657 100 ntBASIC2□□□□□ -2.09
LIG3P49916 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC2□□□□□ -2.09
LIG3P49916 MIR103A2-201ENST00000362154 78 ntBASIC1.99□□□□□ -2.09
LIG3P49916 RNU6-832P-201ENST00000363319 107 ntBASIC1.99□□□□□ -2.09
LIG3P49916 RNU6-905P-201ENST00000384434 107 ntBASIC1.99□□□□□ -2.09
LIG3P49916 Y_RNA.601-201ENST00000410500 113 ntBASIC1.99□□□□□ -2.09
LIG3P49916 AC244023.1-201ENST00000426884 112 ntBASIC1.99□□□□□ -2.09
LIG3P49916 AL353813.1-201ENST00000440700 253 ntBASIC1.99□□□□□ -2.09
LIG3P49916 snoU13.25-201ENST00000458945 104 ntBASIC1.99□□□□□ -2.09
LIG3P49916 AC008834.1-201ENST00000511612 175 ntBASIC1.99□□□□□ -2.09
LIG3P49916 RNU6-970P-201ENST00000516312 107 ntBASIC1.99□□□□□ -2.09
LIG3P49916 SNORD67.1-201ENST00000516618 108 ntBASIC1.99□□□□□ -2.09
LIG3P49916 RNU11-2P-201ENST00000516898 142 ntBASIC1.99□□□□□ -2.09
LIG3P49916 RNU6-158P-201ENST00000517104 100 ntBASIC1.99□□□□□ -2.09
LIG3P49916 MIR3664-201ENST00000579074 99 ntBASIC1.99□□□□□ -2.09
LIG3P49916 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.99□□□□□ -2.09
LIG3P49916 MIR5089-201ENST00000580047 84 ntBASIC1.99□□□□□ -2.09
LIG3P49916 MIR4264-201ENST00000583520 66 ntBASIC1.99□□□□□ -2.09
LIG3P49916 AC242498.1-201ENST00000604134 111 ntBASIC1.99□□□□□ -2.09
LIG3P49916 AL512310.12-203ENST00000640543 90 ntBASIC1.99□□□□□ -2.09
LIG3P49916 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
LIG3P49916 MIR206-201ENST00000384872 86 ntBASIC1.98□□□□□ -2.09
LIG3P49916 MT-TN-201ENST00000387400 73 ntBASIC1.98□□□□□ -2.09
LIG3P49916 snoU13.2-201ENST00000459201 104 ntBASIC1.98□□□□□ -2.09
LIG3P49916 SCARNA23-201ENST00000516060 130 ntBASIC1.98□□□□□ -2.09
LIG3P49916 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.98□□□□□ -2.09
LIG3P49916 AC141846.1-201ENST00000568348 142 ntBASIC1.98□□□□□ -2.09
LIG3P49916 AL662814.1-201ENST00000617364 121 ntBASIC1.98□□□□□ -2.09
LIG3P49916 MIR2052-201ENST00000636055 55 ntBASIC1.98□□□□□ -2.09
LIG3P49916 ZNF355P-201ENST00000427301 3216 ntBASIC1.98□□□□□ -2.09
LIG3P49916 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
LIG3P49916 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
LIG3P49916 RNU6-1313P-201ENST00000362622 102 ntBASIC1.97□□□□□ -2.09
LIG3P49916 RNA5SP264-201ENST00000363115 107 ntBASIC1.97□□□□□ -2.09
LIG3P49916 Y_RNA.107-201ENST00000363190 121 ntBASIC1.97□□□□□ -2.09
LIG3P49916 SNORD114-10-201ENST00000363409 72 ntBASIC1.97□□□□□ -2.09
LIG3P49916 RNU6-1255P-201ENST00000363434 112 ntBASIC1.97□□□□□ -2.09
LIG3P49916 RNU6-640P-201ENST00000363693 105 ntBASIC1.97□□□□□ -2.09
LIG3P49916 Y_RNA.377-201ENST00000365644 108 ntBASIC1.97□□□□□ -2.09
LIG3P49916 RNU6ATAC41P-201ENST00000408600 126 ntBASIC1.97□□□□□ -2.09
LIG3P49916 RNU7-137P-201ENST00000516788 62 ntBASIC1.97□□□□□ -2.09
LIG3P49916 AP003716.2-201ENST00000528260 108 ntBASIC1.97□□□□□ -2.09
LIG3P49916 AL512310.8-201ENST00000550183 120 ntBASIC1.97□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 560.6 ms