Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 SNORA32-201ENST00000384072 121 ntBASIC0.99□□□□□ -2.25
HOXA1P49639 RNU6-1104P-201ENST00000384723 104 ntBASIC0.99□□□□□ -2.25
HOXA1P49639 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.99□□□□□ -2.25
HOXA1P49639 SNORD83.1-201ENST00000411362 77 ntBASIC0.99□□□□□ -2.25
HOXA1P49639 AL158147.1-201ENST00000443970 75 ntBASIC0.99□□□□□ -2.25
HOXA1P49639 RNU7-62P-201ENST00000458856 62 ntBASIC0.99□□□□□ -2.25
HOXA1P49639 AC004223.1-201ENST00000479840 271 ntBASIC0.99□□□□□ -2.25
HOXA1P49639 AC113410.1-201ENST00000505029 247 ntBASIC0.99□□□□□ -2.25
HOXA1P49639 RNY4P20-201ENST00000516678 93 ntBASIC0.99□□□□□ -2.25
HOXA1P49639 MIR3152-201ENST00000579801 74 ntBASIC0.99□□□□□ -2.25
HOXA1P49639 AP000753.3-201ENST00000604083 169 ntBASIC0.99□□□□□ -2.25
HOXA1P49639 AC103810.9-201ENST00000606688 112 ntBASIC0.99□□□□□ -2.25
HOXA1P49639 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC0.99□□□□□ -2.25
HOXA1P49639 Y_RNA.430-201ENST00000384081 110 ntBASIC0.98□□□□□ -2.25
HOXA1P49639 SNORA40.6-201ENST00000391153 128 ntBASIC0.98□□□□□ -2.25
HOXA1P49639 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC0.98□□□□□ -2.25
HOXA1P49639 MIR1263-201ENST00000408324 86 ntBASIC0.98□□□□□ -2.25
HOXA1P49639 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.98□□□□□ -2.25
HOXA1P49639 RNU7-90P-201ENST00000459216 62 ntBASIC0.98□□□□□ -2.25
HOXA1P49639 RNU7-113P-201ENST00000459273 62 ntBASIC0.98□□□□□ -2.25
HOXA1P49639 SNORD124-201ENST00000459577 104 ntBASIC0.98□□□□□ -2.25
HOXA1P49639 RN7SKP19-201ENST00000516016 252 ntBASIC0.98□□□□□ -2.25
HOXA1P49639 RNU7-40P-201ENST00000516397 64 ntBASIC0.98□□□□□ -2.25
HOXA1P49639 RNU11-2P-201ENST00000516898 142 ntBASIC0.98□□□□□ -2.25
HOXA1P49639 MIR4421-201ENST00000578133 69 ntBASIC0.98□□□□□ -2.25
HOXA1P49639 MIR4264-201ENST00000583520 66 ntBASIC0.98□□□□□ -2.25
HOXA1P49639 TUG1_4.1-201ENST00000619464 181 ntBASIC0.98□□□□□ -2.25
HOXA1P49639 RNU6-1187P-201ENST00000364771 110 ntBASIC0.97□□□□□ -2.25
HOXA1P49639 Y_RNA.298-201ENST00000364960 107 ntBASIC0.97□□□□□ -2.25
HOXA1P49639 SNORA18-201ENST00000384416 132 ntBASIC0.97□□□□□ -2.25
HOXA1P49639 MT-TI-201ENST00000387365 69 ntBASIC0.97□□□□□ -2.25
HOXA1P49639 RNA5SP261-201ENST00000410536 106 ntBASIC0.97□□□□□ -2.25
HOXA1P49639 Y_RNA.630-201ENST00000411370 108 ntBASIC0.97□□□□□ -2.25
HOXA1P49639 AL022718.1-201ENST00000412004 84 ntBASIC0.97□□□□□ -2.25
HOXA1P49639 snoU13.2-201ENST00000459201 104 ntBASIC0.97□□□□□ -2.25
HOXA1P49639 RNU6-1061P-201ENST00000516530 99 ntBASIC0.97□□□□□ -2.25
HOXA1P49639 RNA5SP33-201ENST00000516687 98 ntBASIC0.97□□□□□ -2.25
HOXA1P49639 RNA5SP404-201ENST00000517118 132 ntBASIC0.97□□□□□ -2.25
HOXA1P49639 AC004812.1-201ENST00000540773 146 ntBASIC0.97□□□□□ -2.25
HOXA1P49639 MIR4303-201ENST00000581299 66 ntBASIC0.97□□□□□ -2.25
HOXA1P49639 MIR378A-201ENST00000362177 66 ntBASIC0.96□□□□□ -2.26
HOXA1P49639 SNORA7.1-201ENST00000363750 139 ntBASIC0.96□□□□□ -2.26
HOXA1P49639 SNORD113.3-201ENST00000364630 78 ntBASIC0.96□□□□□ -2.26
HOXA1P49639 SNORD50.2-201ENST00000365465 70 ntBASIC0.96□□□□□ -2.26
HOXA1P49639 MIR764-201ENST00000390811 85 ntBASIC0.96□□□□□ -2.26
HOXA1P49639 RNU6-113P-201ENST00000516653 101 ntBASIC0.96□□□□□ -2.26
HOXA1P49639 MIR548AE2-201ENST00000583456 67 ntBASIC0.96□□□□□ -2.26
HOXA1P49639 MIR4769-201ENST00000584126 77 ntBASIC0.96□□□□□ -2.26
HOXA1P49639 MIR3660-201ENST00000584845 100 ntBASIC0.96□□□□□ -2.26
HOXA1P49639 AC106800.4-201ENST00000614905 153 ntBASIC0.96□□□□□ -2.26
HOXA1P49639 Y_RNA.140-201ENST00000363474 103 ntBASIC0.95□□□□□ -2.26
HOXA1P49639 Y_RNA.168-201ENST00000363740 102 ntBASIC0.95□□□□□ -2.26
HOXA1P49639 RNA5SP99-201ENST00000364020 114 ntBASIC0.95□□□□□ -2.26
HOXA1P49639 Y_RNA.531-201ENST00000384589 121 ntBASIC0.95□□□□□ -2.26
HOXA1P49639 MT-TN-201ENST00000387400 73 ntBASIC0.95□□□□□ -2.26
HOXA1P49639 RNU6-1165P-201ENST00000410119 107 ntBASIC0.95□□□□□ -2.26
HOXA1P49639 MIR1270-201ENST00000459320 83 ntBASIC0.95□□□□□ -2.26
HOXA1P49639 RNU6-237P-201ENST00000515985 71 ntBASIC0.95□□□□□ -2.26
HOXA1P49639 MIR3910-1-201ENST00000580936 111 ntBASIC0.95□□□□□ -2.26
HOXA1P49639 AL589743.1-201ENST00000551932 2712 ntBASIC0.95□□□□□ -2.26
HOXA1P49639 Y_RNA.71-201ENST00000362892 104 ntBASIC0.94□□□□□ -2.26
HOXA1P49639 RNU6-647P-201ENST00000364243 107 ntBASIC0.94□□□□□ -2.26
HOXA1P49639 RNU6-580P-201ENST00000365159 107 ntBASIC0.94□□□□□ -2.26
HOXA1P49639 SNORD12-201ENST00000391002 90 ntBASIC0.94□□□□□ -2.26
HOXA1P49639 RNA5SP237-201ENST00000410414 113 ntBASIC0.94□□□□□ -2.26
HOXA1P49639 RNU6-994P-201ENST00000410507 111 ntBASIC0.94□□□□□ -2.26
HOXA1P49639 RNU6-735P-201ENST00000410612 107 ntBASIC0.94□□□□□ -2.26
HOXA1P49639 Y_RNA.617-201ENST00000410920 90 ntBASIC0.94□□□□□ -2.26
HOXA1P49639 TMSB4XP3-201ENST00000445144 114 ntBASIC0.94□□□□□ -2.26
HOXA1P49639 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.94□□□□□ -2.26
HOXA1P49639 RNU6-772P-201ENST00000516042 105 ntBASIC0.94□□□□□ -2.26
HOXA1P49639 RNA5SP458-201ENST00000516188 119 ntBASIC0.94□□□□□ -2.26
HOXA1P49639 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.94□□□□□ -2.26
HOXA1P49639 AL353770.2-201ENST00000620024 78 ntBASIC0.94□□□□□ -2.26
HOXA1P49639 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.94□□□□□ -2.26
HOXA1P49639 MIR377-201ENST00000362145 69 ntBASIC0.93□□□□□ -2.26
HOXA1P49639 MIR30D-201ENST00000362283 70 ntBASIC0.93□□□□□ -2.26
HOXA1P49639 Y_RNA.354-201ENST00000365448 111 ntBASIC0.93□□□□□ -2.26
HOXA1P49639 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.93□□□□□ -2.26
HOXA1P49639 RNU4-62P-201ENST00000410125 130 ntBASIC0.93□□□□□ -2.26
HOXA1P49639 AC108667.1-201ENST00000428618 249 ntBASIC0.93□□□□□ -2.26
HOXA1P49639 RNU7-95P-201ENST00000459222 64 ntBASIC0.93□□□□□ -2.26
HOXA1P49639 AC141846.1-201ENST00000568348 142 ntBASIC0.93□□□□□ -2.26
HOXA1P49639 MIR4771-2-201ENST00000577758 74 ntBASIC0.93□□□□□ -2.26
HOXA1P49639 MIR4771-1-201ENST00000582617 74 ntBASIC0.93□□□□□ -2.26
HOXA1P49639 AL662814.1-201ENST00000617364 121 ntBASIC0.93□□□□□ -2.26
HOXA1P49639 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
HOXA1P49639 Y_RNA.261-201ENST00000364631 102 ntBASIC0.92□□□□□ -2.26
HOXA1P49639 SNORD58C-201ENST00000365223 64 ntBASIC0.92□□□□□ -2.26
HOXA1P49639 RNU6-1335P-201ENST00000365426 107 ntBASIC0.92□□□□□ -2.26
HOXA1P49639 MIR563-201ENST00000385080 79 ntBASIC0.92□□□□□ -2.26
HOXA1P49639 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.92□□□□□ -2.26
HOXA1P49639 RNU4-61P-201ENST00000411243 107 ntBASIC0.92□□□□□ -2.26
HOXA1P49639 AP1B1P2-201ENST00000416196 106 ntBASIC0.92□□□□□ -2.26
HOXA1P49639 RPS23P4-201ENST00000487908 423 ntBASIC0.92□□□□□ -2.26
HOXA1P49639 MIR4295-201ENST00000585286 85 ntBASIC0.92□□□□□ -2.26
HOXA1P49639 AC020891.4-201ENST00000605745 93 ntBASIC0.92□□□□□ -2.26
HOXA1P49639 MIR6078-201ENST00000611069 100 ntBASIC0.92□□□□□ -2.26
HOXA1P49639 AC012676.2-201ENST00000619258 186 ntBASIC0.92□□□□□ -2.26
HOXA1P49639 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.92□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 167.9 ms