Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 SNORA9.1-201ENST00000362412 131 ntBASIC0.01□□□□□ -2.41
RFX3P48380 Y_RNA.68-201ENST00000362881 102 ntBASIC0.01□□□□□ -2.41
RFX3P48380 Y_RNA.82-201ENST00000363000 102 ntBASIC0.01□□□□□ -2.41
RFX3P48380 Y_RNA.92-201ENST00000363043 102 ntBASIC0.01□□□□□ -2.41
RFX3P48380 RNU6-403P-201ENST00000363163 104 ntBASIC0.01□□□□□ -2.41
RFX3P48380 Y_RNA.235-201ENST00000364412 102 ntBASIC0.01□□□□□ -2.41
RFX3P48380 Y_RNA.306-201ENST00000365015 102 ntBASIC0.01□□□□□ -2.41
RFX3P48380 Y_RNA.312-201ENST00000365089 102 ntBASIC0.01□□□□□ -2.41
RFX3P48380 Y_RNA.322-201ENST00000365151 102 ntBASIC0.01□□□□□ -2.41
RFX3P48380 MT-TT-201ENST00000387460 66 ntBASIC0.01□□□□□ -2.41
RFX3P48380 U8.15-201ENST00000390947 134 ntBASIC0.01□□□□□ -2.41
RFX3P48380 RNU6-1203P-201ENST00000410703 110 ntBASIC0.01□□□□□ -2.41
RFX3P48380 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.01□□□□□ -2.41
RFX3P48380 SNORD2.1-201ENST00000458762 69 ntBASIC0.01□□□□□ -2.41
RFX3P48380 Y_RNA.650-201ENST00000459002 102 ntBASIC0.01□□□□□ -2.41
RFX3P48380 RNU7-45P-201ENST00000459460 63 ntBASIC0.01□□□□□ -2.41
RFX3P48380 Y_RNA.777-201ENST00000516982 102 ntBASIC0.01□□□□□ -2.41
RFX3P48380 Y_RNA.711-201ENST00000516993 102 ntBASIC0.01□□□□□ -2.41
RFX3P48380 AL365205.2-201ENST00000594586 68 ntBASIC0.01□□□□□ -2.41
RFX3P48380 Y_RNA.771-201ENST00000598668 102 ntBASIC0.01□□□□□ -2.41
RFX3P48380 Y_RNA.789-201ENST00000622480 102 ntBASIC0.01□□□□□ -2.41
RFX3P48380 Y_RNA.23-201ENST00000362496 106 ntBASIC0□□□□□ -2.41
RFX3P48380 SNORD114-5-201ENST00000362928 70 ntBASIC0□□□□□ -2.41
RFX3P48380 RNU6-1229P-201ENST00000364295 107 ntBASIC0□□□□□ -2.41
RFX3P48380 RNU6-949P-201ENST00000384040 107 ntBASIC0□□□□□ -2.41
RFX3P48380 RNU6-187P-201ENST00000384139 106 ntBASIC0□□□□□ -2.41
RFX3P48380 Y_RNA.527-201ENST00000384573 102 ntBASIC0□□□□□ -2.41
RFX3P48380 Y_RNA.588-201ENST00000391254 102 ntBASIC0□□□□□ -2.41
RFX3P48380 MIR548P-201ENST00000408336 84 ntBASIC0□□□□□ -2.41
RFX3P48380 AC069271.1-201ENST00000445577 156 ntBASIC0□□□□□ -2.41
RFX3P48380 RNU6-893P-201ENST00000458841 100 ntBASIC0□□□□□ -2.41
RFX3P48380 SCARNA24.2-201ENST00000516968 130 ntBASIC0□□□□□ -2.41
RFX3P48380 SCARNA16.5-201ENST00000517114 183 ntBASIC0□□□□□ -2.41
RFX3P48380 AC141846.1-201ENST00000568348 142 ntBASIC0□□□□□ -2.41
RFX3P48380 MIR6841-201ENST00000637129 72 ntBASIC0□□□□□ -2.41
RFX3P48380 MTND4P29-201ENST00000503122 1372 ntBASIC-0.01□□□□□ -2.41
RFX3P48380 MIR411-201ENST00000362239 96 ntBASIC-0.01□□□□□ -2.41
RFX3P48380 Y_RNA.26-201ENST00000362539 101 ntBASIC-0.01□□□□□ -2.41
RFX3P48380 snoU2_19.4-201ENST00000364329 80 ntBASIC-0.01□□□□□ -2.41
RFX3P48380 PCNPP3-201ENST00000393579 471 ntBASIC-0.01□□□□□ -2.41
RFX3P48380 RNU5E-9P-201ENST00000411164 104 ntBASIC-0.01□□□□□ -2.41
RFX3P48380 SEPT7P4-201ENST00000437076 306 ntBASIC-0.01□□□□□ -2.41
RFX3P48380 RNU7-70P-201ENST00000516941 66 ntBASIC-0.01□□□□□ -2.41
RFX3P48380 MIR4491-201ENST00000581087 68 ntBASIC-0.01□□□□□ -2.41
RFX3P48380 MIR3129-201ENST00000581095 76 ntBASIC-0.01□□□□□ -2.41
RFX3P48380 AC104408.1-201ENST00000605241 170 ntBASIC-0.01□□□□□ -2.41
RFX3P48380 MIR7107-201ENST00000611489 80 ntBASIC-0.01□□□□□ -2.41
RFX3P48380 AC067863.3-201ENST00000624172 122 ntBASIC-0.01□□□□□ -2.41
RFX3P48380 MIR376A2-201ENST00000636782 80 ntBASIC-0.01□□□□□ -2.41
RFX3P48380 AC091304.10-201ENST00000641554 121 ntBASIC-0.01□□□□□ -2.41
RFX3P48380 AL596211.1-201ENST00000569873 2277 ntBASIC-0.02□□□□□ -2.41
RFX3P48380 Y_RNA.32-201ENST00000362589 110 ntBASIC-0.02□□□□□ -2.41
RFX3P48380 Y_RNA.117-201ENST00000363294 101 ntBASIC-0.02□□□□□ -2.41
RFX3P48380 RNA5SP214-201ENST00000363378 118 ntBASIC-0.02□□□□□ -2.41
RFX3P48380 SNORD114-9-201ENST00000364370 72 ntBASIC-0.02□□□□□ -2.41
RFX3P48380 RNU6-728P-201ENST00000365375 104 ntBASIC-0.02□□□□□ -2.41
RFX3P48380 MIR329-2-201ENST00000385029 84 ntBASIC-0.02□□□□□ -2.41
RFX3P48380 RNU4-43P-201ENST00000410628 137 ntBASIC-0.02□□□□□ -2.41
RFX3P48380 SUMO1P3-201ENST00000439961 304 ntBASIC-0.02□□□□□ -2.41
RFX3P48380 Y_RNA.660-201ENST00000516002 120 ntBASIC-0.02□□□□□ -2.41
RFX3P48380 RNA5SP227-201ENST00000516184 113 ntBASIC-0.02□□□□□ -2.41
RFX3P48380 RNA5SP285-201ENST00000516619 119 ntBASIC-0.02□□□□□ -2.41
RFX3P48380 SNORA31.14-201ENST00000516728 116 ntBASIC-0.02□□□□□ -2.41
RFX3P48380 MIR4667-201ENST00000578933 66 ntBASIC-0.02□□□□□ -2.41
RFX3P48380 MIR4680-201ENST00000580906 66 ntBASIC-0.02□□□□□ -2.41
RFX3P48380 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC-0.02□□□□□ -2.41
RFX3P48380 MIR4639-201ENST00000584938 69 ntBASIC-0.02□□□□□ -2.41
RFX3P48380 SNORA22.1-201ENST00000362701 134 ntBASIC-0.03□□□□□ -2.41
RFX3P48380 SNORD114-16-201ENST00000363044 70 ntBASIC-0.03□□□□□ -2.41
RFX3P48380 Y_RNA.412-201ENST00000384001 104 ntBASIC-0.03□□□□□ -2.41
RFX3P48380 Y_RNA.515-201ENST00000384535 112 ntBASIC-0.03□□□□□ -2.41
RFX3P48380 Y_RNA.536-201ENST00000384621 113 ntBASIC-0.03□□□□□ -2.41
RFX3P48380 MTATP6P23-201ENST00000440153 476 ntBASIC-0.03□□□□□ -2.41
RFX3P48380 RNU7-129P-201ENST00000516128 62 ntBASIC-0.03□□□□□ -2.41
RFX3P48380 RNU6-453P-201ENST00000516819 85 ntBASIC-0.03□□□□□ -2.41
RFX3P48380 RNA5SP47-201ENST00000517230 109 ntBASIC-0.03□□□□□ -2.41
RFX3P48380 AC021613.1-201ENST00000623880 111 ntBASIC-0.03□□□□□ -2.41
RFX3P48380 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC-0.04□□□□□ -2.42
RFX3P48380 MIR335-201ENST00000362173 94 ntBASIC-0.04□□□□□ -2.42
RFX3P48380 Y_RNA.153-201ENST00000363615 91 ntBASIC-0.04□□□□□ -2.42
RFX3P48380 Y_RNA.176-201ENST00000363815 109 ntBASIC-0.04□□□□□ -2.42
RFX3P48380 RNU6-1126P-201ENST00000384002 107 ntBASIC-0.04□□□□□ -2.42
RFX3P48380 Y_RNA.423-201ENST00000384057 113 ntBASIC-0.04□□□□□ -2.42
RFX3P48380 Y_RNA.539-201ENST00000384635 107 ntBASIC-0.04□□□□□ -2.42
RFX3P48380 RNU6-1086P-201ENST00000410930 100 ntBASIC-0.04□□□□□ -2.42
RFX3P48380 TRBVB-201ENST00000477100 408 ntBASIC-0.04□□□□□ -2.42
RFX3P48380 RNU6-1194P-201ENST00000516208 104 ntBASIC-0.04□□□□□ -2.42
RFX3P48380 U2.14-201ENST00000615943 113 ntBASIC-0.04□□□□□ -2.42
RFX3P48380 RNU6-103P-201ENST00000363686 107 ntBASIC-0.05□□□□□ -2.42
RFX3P48380 Y_RNA.362-201ENST00000365518 110 ntBASIC-0.05□□□□□ -2.42
RFX3P48380 Y_RNA.433-201ENST00000384089 102 ntBASIC-0.05□□□□□ -2.42
RFX3P48380 SNORD28-201ENST00000384706 75 ntBASIC-0.05□□□□□ -2.42
RFX3P48380 RNU6-535P-201ENST00000384722 107 ntBASIC-0.05□□□□□ -2.42
RFX3P48380 MIR643-201ENST00000385267 97 ntBASIC-0.05□□□□□ -2.42
RFX3P48380 RNU6-127P-201ENST00000390897 107 ntBASIC-0.05□□□□□ -2.42
RFX3P48380 RNU6-381P-201ENST00000391259 108 ntBASIC-0.05□□□□□ -2.42
RFX3P48380 AC096949.1-201ENST00000412047 152 ntBASIC-0.05□□□□□ -2.42
RFX3P48380 MTND5P22-201ENST00000458380 195 ntBASIC-0.05□□□□□ -2.42
RFX3P48380 Y_RNA.697-201ENST00000516776 113 ntBASIC-0.05□□□□□ -2.42
RFX3P48380 AC141557.1-201ENST00000540982 400 ntBASIC-0.05□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 112.5 ms