Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MIR18A-201ENST00000362310 71 ntBASIC0.51□□□□□ -2.33
CDX1P47902 Y_RNA.20-201ENST00000362479 113 ntBASIC0.51□□□□□ -2.33
CDX1P47902 RNU4-45P-201ENST00000365469 141 ntBASIC0.51□□□□□ -2.33
CDX1P47902 Y_RNA.539-201ENST00000384635 107 ntBASIC0.51□□□□□ -2.33
CDX1P47902 MIR563-201ENST00000385080 79 ntBASIC0.51□□□□□ -2.33
CDX1P47902 RNA5SP127-201ENST00000411051 133 ntBASIC0.51□□□□□ -2.33
CDX1P47902 RNU7-102P-201ENST00000458948 62 ntBASIC0.51□□□□□ -2.33
CDX1P47902 Y_RNA.668-201ENST00000516233 93 ntBASIC0.51□□□□□ -2.33
CDX1P47902 MIR3128-201ENST00000581957 66 ntBASIC0.51□□□□□ -2.33
CDX1P47902 U4.1-201ENST00000620349 87 ntBASIC0.51□□□□□ -2.33
CDX1P47902 MIR30D-201ENST00000362283 70 ntBASIC0.5□□□□□ -2.33
CDX1P47902 RNY1P8-201ENST00000383970 114 ntBASIC0.5□□□□□ -2.33
CDX1P47902 Y_RNA.571-201ENST00000384753 98 ntBASIC0.5□□□□□ -2.33
CDX1P47902 MIR598-201ENST00000384868 97 ntBASIC0.5□□□□□ -2.33
CDX1P47902 MIR92A1-201ENST00000385233 78 ntBASIC0.5□□□□□ -2.33
CDX1P47902 MIR613-201ENST00000385248 95 ntBASIC0.5□□□□□ -2.33
CDX1P47902 SNORD93-201ENST00000408813 74 ntBASIC0.5□□□□□ -2.33
CDX1P47902 uc_338.17-201ENST00000619633 179 ntBASIC0.5□□□□□ -2.33
CDX1P47902 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.5□□□□□ -2.33
CDX1P47902 RNU6-978P-201ENST00000364371 103 ntBASIC0.49□□□□□ -2.33
CDX1P47902 SNORA20.1-201ENST00000364790 130 ntBASIC0.49□□□□□ -2.33
CDX1P47902 RNU6-643P-201ENST00000384018 107 ntBASIC0.49□□□□□ -2.33
CDX1P47902 Y_RNA.430-201ENST00000384081 110 ntBASIC0.49□□□□□ -2.33
CDX1P47902 RNU6-679P-201ENST00000391003 106 ntBASIC0.49□□□□□ -2.33
CDX1P47902 RNU4-71P-201ENST00000516258 113 ntBASIC0.49□□□□□ -2.33
CDX1P47902 AC004812.1-201ENST00000540773 146 ntBASIC0.49□□□□□ -2.33
CDX1P47902 MIR4308-201ENST00000580634 81 ntBASIC0.49□□□□□ -2.33
CDX1P47902 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.48□□□□□ -2.33
CDX1P47902 SNORA25.7-201ENST00000364375 127 ntBASIC0.48□□□□□ -2.33
CDX1P47902 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.48□□□□□ -2.33
CDX1P47902 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.48□□□□□ -2.33
CDX1P47902 AC090897.1-201ENST00000580909 226 ntBASIC0.48□□□□□ -2.33
CDX1P47902 SNORD92-201ENST00000585078 85 ntBASIC0.48□□□□□ -2.33
CDX1P47902 AC008608.1-201ENST00000603910 127 ntBASIC0.48□□□□□ -2.33
CDX1P47902 AC021613.1-201ENST00000623880 111 ntBASIC0.48□□□□□ -2.33
CDX1P47902 RNA5SP347-201ENST00000362445 119 ntBASIC0.47□□□□□ -2.33
CDX1P47902 RNA5SP117-201ENST00000365294 118 ntBASIC0.47□□□□□ -2.33
CDX1P47902 Y_RNA.466-201ENST00000384294 113 ntBASIC0.47□□□□□ -2.33
CDX1P47902 Y_RNA.521-201ENST00000384560 114 ntBASIC0.47□□□□□ -2.33
CDX1P47902 MIR624-201ENST00000385217 97 ntBASIC0.47□□□□□ -2.33
CDX1P47902 SNORD58.1-201ENST00000391313 66 ntBASIC0.47□□□□□ -2.33
CDX1P47902 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.47□□□□□ -2.33
CDX1P47902 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.47□□□□□ -2.33
CDX1P47902 RNA5SP436-201ENST00000516020 115 ntBASIC0.47□□□□□ -2.33
CDX1P47902 RNU6-1149P-201ENST00000516810 97 ntBASIC0.47□□□□□ -2.33
CDX1P47902 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.47□□□□□ -2.33
CDX1P47902 PVT1_3.1-201ENST00000620853 95 ntBASIC0.47□□□□□ -2.33
CDX1P47902 MIR6513-201ENST00000621188 64 ntBASIC0.47□□□□□ -2.33
CDX1P47902 SNORA22.1-201ENST00000362701 134 ntBASIC0.46□□□□□ -2.34
CDX1P47902 RNU6-702P-201ENST00000364982 107 ntBASIC0.46□□□□□ -2.34
CDX1P47902 RNU6-597P-201ENST00000365620 102 ntBASIC0.46□□□□□ -2.34
CDX1P47902 RNU6-196P-201ENST00000384315 107 ntBASIC0.46□□□□□ -2.34
CDX1P47902 Y_RNA.515-201ENST00000384535 112 ntBASIC0.46□□□□□ -2.34
CDX1P47902 SNORD100-201ENST00000408573 76 ntBASIC0.46□□□□□ -2.34
CDX1P47902 RNU4-83P-201ENST00000410863 133 ntBASIC0.46□□□□□ -2.34
CDX1P47902 MTND3P2-201ENST00000438452 342 ntBASIC0.46□□□□□ -2.34
CDX1P47902 RNU6-893P-201ENST00000458841 100 ntBASIC0.46□□□□□ -2.34
CDX1P47902 AC002350.1-201ENST00000490759 375 ntBASIC0.46□□□□□ -2.34
CDX1P47902 RN7SKP12-201ENST00000516275 143 ntBASIC0.46□□□□□ -2.34
CDX1P47902 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.46□□□□□ -2.34
CDX1P47902 AL662814.1-201ENST00000617364 121 ntBASIC0.46□□□□□ -2.34
CDX1P47902 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.45□□□□□ -2.34
CDX1P47902 RNU6-275P-201ENST00000364910 107 ntBASIC0.45□□□□□ -2.34
CDX1P47902 RNU6-342P-201ENST00000384521 104 ntBASIC0.45□□□□□ -2.34
CDX1P47902 AL157398.1-201ENST00000452981 186 ntBASIC0.45□□□□□ -2.34
CDX1P47902 RNU6-1023P-201ENST00000516137 106 ntBASIC0.45□□□□□ -2.34
CDX1P47902 RNA5SP480-201ENST00000516840 109 ntBASIC0.45□□□□□ -2.34
CDX1P47902 RNU6-448P-201ENST00000517052 107 ntBASIC0.45□□□□□ -2.34
CDX1P47902 RNU6-111P-201ENST00000517179 105 ntBASIC0.45□□□□□ -2.34
CDX1P47902 MIR4719-201ENST00000585233 84 ntBASIC0.45□□□□□ -2.34
CDX1P47902 AC092634.7-201ENST00000621022 103 ntBASIC0.45□□□□□ -2.34
CDX1P47902 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.45□□□□□ -2.34
CDX1P47902 Y_RNA.60-201ENST00000362831 98 ntBASIC0.44□□□□□ -2.34
CDX1P47902 RNU4-16P-201ENST00000364737 141 ntBASIC0.44□□□□□ -2.34
CDX1P47902 Y_RNA.447-201ENST00000384184 113 ntBASIC0.44□□□□□ -2.34
CDX1P47902 Y_RNA.680-201ENST00000516441 93 ntBASIC0.44□□□□□ -2.34
CDX1P47902 SCARNA15-202ENST00000516881 127 ntBASIC0.44□□□□□ -2.34
CDX1P47902 MIR4503-201ENST00000582187 83 ntBASIC0.44□□□□□ -2.34
CDX1P47902 U6.106-201ENST00000636360 105 ntBASIC0.44□□□□□ -2.34
CDX1P47902 RNU6-403P-201ENST00000363163 104 ntBASIC0.43□□□□□ -2.34
CDX1P47902 AC092628.1-201ENST00000436250 252 ntBASIC0.43□□□□□ -2.34
CDX1P47902 Y_RNA.36-201ENST00000362602 112 ntBASIC0.42□□□□□ -2.34
CDX1P47902 Y_RNA.75-201ENST00000362927 97 ntBASIC0.42□□□□□ -2.34
CDX1P47902 Y_RNA.193-201ENST00000363979 102 ntBASIC0.42□□□□□ -2.34
CDX1P47902 Y_RNA.412-201ENST00000384001 104 ntBASIC0.42□□□□□ -2.34
CDX1P47902 Y_RNA.540-201ENST00000384638 111 ntBASIC0.42□□□□□ -2.34
CDX1P47902 SNORA25.12-201ENST00000516202 82 ntBASIC0.42□□□□□ -2.34
CDX1P47902 AC141846.1-201ENST00000568348 142 ntBASIC0.42□□□□□ -2.34
CDX1P47902 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.42□□□□□ -2.34
CDX1P47902 MIR6841-201ENST00000637129 72 ntBASIC0.42□□□□□ -2.34
CDX1P47902 MTND5P32-201ENST00000560711 1802 ntBASIC0.42□□□□□ -2.34
CDX1P47902 Y_RNA.83-201ENST00000363005 113 ntBASIC0.41□□□□□ -2.34
CDX1P47902 Y_RNA.200-201ENST00000364018 102 ntBASIC0.41□□□□□ -2.34
CDX1P47902 Y_RNA.307-201ENST00000365022 117 ntBASIC0.41□□□□□ -2.34
CDX1P47902 SNORA18-201ENST00000384416 132 ntBASIC0.41□□□□□ -2.34
CDX1P47902 MIR216A-201ENST00000385063 110 ntBASIC0.41□□□□□ -2.34
CDX1P47902 U8.15-201ENST00000390947 134 ntBASIC0.41□□□□□ -2.34
CDX1P47902 MIR936-201ENST00000401264 98 ntBASIC0.41□□□□□ -2.34
CDX1P47902 MRPS18CP4-201ENST00000535821 231 ntBASIC0.41□□□□□ -2.34
CDX1P47902 MIR3149-201ENST00000584629 83 ntBASIC0.41□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 183.7 ms