Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 MIR8066-201ENST00000617280 78 ntBASIC0.36□□□□□ -2.35
SDC1P18827 MIR6513-201ENST00000621188 64 ntBASIC0.36□□□□□ -2.35
SDC1P18827 RNU6-923P-201ENST00000364753 107 ntBASIC0.35□□□□□ -2.35
SDC1P18827 RNU1-133P-201ENST00000364867 167 ntBASIC0.35□□□□□ -2.35
SDC1P18827 Y_RNA.539-201ENST00000384635 107 ntBASIC0.35□□□□□ -2.35
SDC1P18827 RNU6-679P-201ENST00000391003 106 ntBASIC0.35□□□□□ -2.35
SDC1P18827 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.35□□□□□ -2.35
SDC1P18827 RNA5SP237-201ENST00000410414 113 ntBASIC0.35□□□□□ -2.35
SDC1P18827 MTCYBP9-201ENST00000431021 303 ntBASIC0.35□□□□□ -2.35
SDC1P18827 SCARNA15-202ENST00000516881 127 ntBASIC0.35□□□□□ -2.35
SDC1P18827 MIR4308-201ENST00000580634 81 ntBASIC0.35□□□□□ -2.35
SDC1P18827 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.35□□□□□ -2.35
SDC1P18827 AC092634.7-201ENST00000621022 103 ntBASIC0.35□□□□□ -2.35
SDC1P18827 AC243829.3-201ENST00000622177 108 ntBASIC0.35□□□□□ -2.35
SDC1P18827 AC021613.1-201ENST00000623880 111 ntBASIC0.35□□□□□ -2.35
SDC1P18827 MIRLET7D-201ENST00000362263 87 ntBASIC0.34□□□□□ -2.36
SDC1P18827 Y_RNA.133-201ENST00000363428 110 ntBASIC0.34□□□□□ -2.36
SDC1P18827 Y_RNA.477-201ENST00000384352 108 ntBASIC0.34□□□□□ -2.36
SDC1P18827 RNU6-342P-201ENST00000384521 104 ntBASIC0.34□□□□□ -2.36
SDC1P18827 SNORD93-201ENST00000408813 74 ntBASIC0.34□□□□□ -2.36
SDC1P18827 RNU4-83P-201ENST00000410863 133 ntBASIC0.34□□□□□ -2.36
SDC1P18827 RNA5SP127-201ENST00000411051 133 ntBASIC0.34□□□□□ -2.36
SDC1P18827 Y_RNA.668-201ENST00000516233 93 ntBASIC0.34□□□□□ -2.36
SDC1P18827 RNA5SP94-201ENST00000516917 108 ntBASIC0.34□□□□□ -2.36
SDC1P18827 RNU6-448P-201ENST00000517052 107 ntBASIC0.34□□□□□ -2.36
SDC1P18827 MIR3152-201ENST00000579801 74 ntBASIC0.34□□□□□ -2.36
SDC1P18827 Y_RNA.42-201ENST00000362660 108 ntBASIC0.33□□□□□ -2.36
SDC1P18827 SNORA22.1-201ENST00000362701 134 ntBASIC0.33□□□□□ -2.36
SDC1P18827 Y_RNA.65-201ENST00000362846 100 ntBASIC0.33□□□□□ -2.36
SDC1P18827 Y_RNA.121-201ENST00000363309 113 ntBASIC0.33□□□□□ -2.36
SDC1P18827 RNA5SP517-201ENST00000364724 117 ntBASIC0.33□□□□□ -2.36
SDC1P18827 SNORA20-201ENST00000384662 132 ntBASIC0.33□□□□□ -2.36
SDC1P18827 MIR624-201ENST00000385217 97 ntBASIC0.33□□□□□ -2.36
SDC1P18827 U8.15-201ENST00000390947 134 ntBASIC0.33□□□□□ -2.36
SDC1P18827 SNORD58.1-201ENST00000391313 66 ntBASIC0.33□□□□□ -2.36
SDC1P18827 Y_RNA.626-201ENST00000411288 95 ntBASIC0.33□□□□□ -2.36
SDC1P18827 Y_RNA.797-201ENST00000515977 94 ntBASIC0.33□□□□□ -2.36
SDC1P18827 RNU6-1149P-201ENST00000516810 97 ntBASIC0.33□□□□□ -2.36
SDC1P18827 RNU7-70P-201ENST00000516941 66 ntBASIC0.33□□□□□ -2.36
SDC1P18827 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.33□□□□□ -2.36
SDC1P18827 AC141846.1-201ENST00000568348 142 ntBASIC0.33□□□□□ -2.36
SDC1P18827 MIR6515-201ENST00000619843 57 ntBASIC0.33□□□□□ -2.36
SDC1P18827 Y_RNA.20-201ENST00000362479 113 ntBASIC0.32□□□□□ -2.36
SDC1P18827 Y_RNA.182-201ENST00000363880 111 ntBASIC0.32□□□□□ -2.36
SDC1P18827 RNU4-16P-201ENST00000364737 141 ntBASIC0.32□□□□□ -2.36
SDC1P18827 RNU6-643P-201ENST00000384018 107 ntBASIC0.32□□□□□ -2.36
SDC1P18827 Y_RNA.556-201ENST00000384677 113 ntBASIC0.32□□□□□ -2.36
SDC1P18827 Y_RNA.571-201ENST00000384753 98 ntBASIC0.32□□□□□ -2.36
SDC1P18827 Y_RNA.617-201ENST00000410920 90 ntBASIC0.32□□□□□ -2.36
SDC1P18827 RNU6-327P-201ENST00000516270 127 ntBASIC0.32□□□□□ -2.36
SDC1P18827 Y_RNA.673-201ENST00000516306 88 ntBASIC0.32□□□□□ -2.36
SDC1P18827 AC022709.1-201ENST00000615967 87 ntBASIC0.32□□□□□ -2.36
SDC1P18827 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.32□□□□□ -2.36
SDC1P18827 RNA5SP117-201ENST00000365294 118 ntBASIC0.31□□□□□ -2.36
SDC1P18827 AC096949.1-201ENST00000412047 152 ntBASIC0.31□□□□□ -2.36
SDC1P18827 RPL39P25-201ENST00000449384 154 ntBASIC0.31□□□□□ -2.36
SDC1P18827 Y_RNA.680-201ENST00000516441 93 ntBASIC0.31□□□□□ -2.36
SDC1P18827 MIR3678-201ENST00000578455 94 ntBASIC0.31□□□□□ -2.36
SDC1P18827 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.3□□□□□ -2.36
SDC1P18827 Y_RNA.13-201ENST00000362403 112 ntBASIC0.3□□□□□ -2.36
SDC1P18827 Y_RNA.350-201ENST00000365409 98 ntBASIC0.3□□□□□ -2.36
SDC1P18827 SNORA50A-201ENST00000384225 134 ntBASIC0.3□□□□□ -2.36
SDC1P18827 Y_RNA.588-201ENST00000391254 102 ntBASIC0.3□□□□□ -2.36
SDC1P18827 RNA5SP436-201ENST00000516020 115 ntBASIC0.3□□□□□ -2.36
SDC1P18827 SNORA25.12-201ENST00000516202 82 ntBASIC0.3□□□□□ -2.36
SDC1P18827 MRPS18CP4-201ENST00000535821 231 ntBASIC0.3□□□□□ -2.36
SDC1P18827 AC133485.4-201ENST00000561835 220 ntBASIC0.3□□□□□ -2.36
SDC1P18827 MIR3128-201ENST00000581957 66 ntBASIC0.3□□□□□ -2.36
SDC1P18827 AC243829.6-201ENST00000612652 106 ntBASIC0.3□□□□□ -2.36
SDC1P18827 RNU6-403P-201ENST00000363163 104 ntBASIC0.29□□□□□ -2.36
SDC1P18827 RNU6-275P-201ENST00000364910 107 ntBASIC0.29□□□□□ -2.36
SDC1P18827 RNU6-1336P-201ENST00000383886 109 ntBASIC0.29□□□□□ -2.36
SDC1P18827 SNORA18-201ENST00000384416 132 ntBASIC0.29□□□□□ -2.36
SDC1P18827 RNU4-70P-201ENST00000384579 139 ntBASIC0.29□□□□□ -2.36
SDC1P18827 MIR518A1-201ENST00000385068 85 ntBASIC0.29□□□□□ -2.36
SDC1P18827 MIR936-201ENST00000401264 98 ntBASIC0.29□□□□□ -2.36
SDC1P18827 SNORA40.8-201ENST00000411034 126 ntBASIC0.29□□□□□ -2.36
SDC1P18827 SCARNA15.1-201ENST00000516384 125 ntBASIC0.29□□□□□ -2.36
SDC1P18827 RNU6-1258P-201ENST00000516911 111 ntBASIC0.29□□□□□ -2.36
SDC1P18827 AP003327.1-201ENST00000529684 127 ntBASIC0.29□□□□□ -2.36
SDC1P18827 SNORA25.18-201ENST00000607153 114 ntBASIC0.29□□□□□ -2.36
SDC1P18827 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.29□□□□□ -2.36
SDC1P18827 MTND5P32-201ENST00000560711 1802 ntBASIC0.29□□□□□ -2.36
SDC1P18827 MIR103A1-201ENST00000362165 78 ntBASIC0.28□□□□□ -2.36
SDC1P18827 Y_RNA.412-201ENST00000384001 104 ntBASIC0.28□□□□□ -2.36
SDC1P18827 RNU6-949P-201ENST00000384040 107 ntBASIC0.28□□□□□ -2.36
SDC1P18827 SNORA8.2-201ENST00000384372 139 ntBASIC0.28□□□□□ -2.36
SDC1P18827 Y_RNA.567-201ENST00000384736 106 ntBASIC0.28□□□□□ -2.36
SDC1P18827 MIR1302-3-201ENST00000408128 138 ntBASIC0.28□□□□□ -2.36
SDC1P18827 snoU13.18-201ENST00000459483 104 ntBASIC0.28□□□□□ -2.36
SDC1P18827 MIR4711-201ENST00000578274 70 ntBASIC0.28□□□□□ -2.36
SDC1P18827 Y_RNA.757-201ENST00000578934 114 ntBASIC0.28□□□□□ -2.36
SDC1P18827 MIR4491-201ENST00000581087 68 ntBASIC0.28□□□□□ -2.36
SDC1P18827 MIR6082-201ENST00000613604 109 ntBASIC0.28□□□□□ -2.36
SDC1P18827 U6.106-201ENST00000636360 105 ntBASIC0.28□□□□□ -2.36
SDC1P18827 Y_RNA.60-201ENST00000362831 98 ntBASIC0.27□□□□□ -2.37
SDC1P18827 SNORA25.7-201ENST00000364375 127 ntBASIC0.27□□□□□ -2.37
SDC1P18827 Y_RNA.478-201ENST00000384358 107 ntBASIC0.27□□□□□ -2.37
SDC1P18827 MIR216A-201ENST00000385063 110 ntBASIC0.27□□□□□ -2.37
SDC1P18827 MIR644A-201ENST00000385262 94 ntBASIC0.27□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 111.6 ms