Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 MIR4643-201ENST00000577473 78 ntBASIC0.38□□□□□ -2.35
HMGB1P09429 MIR4744-201ENST00000581563 82 ntBASIC0.38□□□□□ -2.35
HMGB1P09429 AC021613.1-201ENST00000623880 111 ntBASIC0.38□□□□□ -2.35
HMGB1P09429 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.37□□□□□ -2.35
HMGB1P09429 SNORD118-201ENST00000363593 134 ntBASIC0.36□□□□□ -2.35
HMGB1P09429 Y_RNA.292-201ENST00000364904 97 ntBASIC0.36□□□□□ -2.35
HMGB1P09429 RNA5SP193-201ENST00000410353 107 ntBASIC0.36□□□□□ -2.35
HMGB1P09429 RNU4-43P-201ENST00000410628 137 ntBASIC0.36□□□□□ -2.35
HMGB1P09429 Y_RNA.116-201ENST00000363292 103 ntBASIC0.35□□□□□ -2.35
HMGB1P09429 Y_RNA.308-201ENST00000365043 101 ntBASIC0.35□□□□□ -2.35
HMGB1P09429 VTRNA1-3-201ENST00000365645 89 ntBASIC0.35□□□□□ -2.35
HMGB1P09429 AL512326.2-201ENST00000426359 151 ntBASIC0.35□□□□□ -2.35
HMGB1P09429 RNY3P16-201ENST00000516338 101 ntBASIC0.35□□□□□ -2.35
HMGB1P09429 AP003327.1-201ENST00000529684 127 ntBASIC0.35□□□□□ -2.35
HMGB1P09429 MIR378D2-201ENST00000580636 98 ntBASIC0.35□□□□□ -2.35
HMGB1P09429 MIR6082-201ENST00000613604 109 ntBASIC0.35□□□□□ -2.35
HMGB1P09429 AC022709.1-201ENST00000615967 87 ntBASIC0.35□□□□□ -2.35
HMGB1P09429 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.34□□□□□ -2.36
HMGB1P09429 RNU4-16P-201ENST00000364737 141 ntBASIC0.34□□□□□ -2.36
HMGB1P09429 Y_RNA.396-201ENST00000383949 103 ntBASIC0.34□□□□□ -2.36
HMGB1P09429 RNU6-1132P-201ENST00000459214 107 ntBASIC0.34□□□□□ -2.36
HMGB1P09429 AC108740.1-201ENST00000498629 225 ntBASIC0.34□□□□□ -2.36
HMGB1P09429 Y_RNA.76-201ENST00000362931 109 ntBASIC0.33□□□□□ -2.36
HMGB1P09429 RNU6-42P-201ENST00000384165 107 ntBASIC0.33□□□□□ -2.36
HMGB1P09429 RNU6-472P-201ENST00000384299 107 ntBASIC0.33□□□□□ -2.36
HMGB1P09429 RNU6-1160P-201ENST00000384546 104 ntBASIC0.33□□□□□ -2.36
HMGB1P09429 AC073261.1-201ENST00000429409 121 ntBASIC0.33□□□□□ -2.36
HMGB1P09429 MIR4491-201ENST00000581087 68 ntBASIC0.33□□□□□ -2.36
HMGB1P09429 RNU6-349P-201ENST00000362402 107 ntBASIC0.32□□□□□ -2.36
HMGB1P09429 SNORA18-201ENST00000384416 132 ntBASIC0.32□□□□□ -2.36
HMGB1P09429 RNU6-493P-201ENST00000391321 108 ntBASIC0.32□□□□□ -2.36
HMGB1P09429 Y_RNA.797-201ENST00000515977 94 ntBASIC0.32□□□□□ -2.36
HMGB1P09429 RNU2-4P-201ENST00000606190 192 ntBASIC0.32□□□□□ -2.36
HMGB1P09429 AL589743.1-201ENST00000551932 2712 ntBASIC0.32□□□□□ -2.36
HMGB1P09429 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.31□□□□□ -2.36
HMGB1P09429 RNU6-578P-201ENST00000390980 103 ntBASIC0.31□□□□□ -2.36
HMGB1P09429 RNA5SP127-201ENST00000411051 133 ntBASIC0.31□□□□□ -2.36
HMGB1P09429 MIR6734-201ENST00000621166 68 ntBASIC0.31□□□□□ -2.36
HMGB1P09429 MIR6841-201ENST00000637129 72 ntBASIC0.31□□□□□ -2.36
HMGB1P09429 RNU6-1149P-201ENST00000516810 97 ntBASIC0.3□□□□□ -2.36
HMGB1P09429 AC008737.2-201ENST00000599446 118 ntBASIC0.3□□□□□ -2.36
HMGB1P09429 SNORA36.1-201ENST00000363424 132 ntBASIC0.29□□□□□ -2.36
HMGB1P09429 Y_RNA.515-201ENST00000384535 112 ntBASIC0.29□□□□□ -2.36
HMGB1P09429 MIR606-201ENST00000384851 96 ntBASIC0.29□□□□□ -2.36
HMGB1P09429 MIR518E-201ENST00000385252 88 ntBASIC0.29□□□□□ -2.36
HMGB1P09429 Y_RNA.588-201ENST00000391254 102 ntBASIC0.29□□□□□ -2.36
HMGB1P09429 RNU2-38P-201ENST00000410856 79 ntBASIC0.29□□□□□ -2.36
HMGB1P09429 RNU6-978P-201ENST00000364371 103 ntBASIC0.28□□□□□ -2.36
HMGB1P09429 RNU6-949P-201ENST00000384040 107 ntBASIC0.28□□□□□ -2.36
HMGB1P09429 RNU6-893P-201ENST00000458841 100 ntBASIC0.28□□□□□ -2.36
HMGB1P09429 RNA5SP268-201ENST00000516828 124 ntBASIC0.28□□□□□ -2.36
HMGB1P09429 MIR5093-201ENST00000583199 100 ntBASIC0.28□□□□□ -2.36
HMGB1P09429 Y_RNA.32-201ENST00000362589 110 ntBASIC0.27□□□□□ -2.37
HMGB1P09429 MIR548F4-201ENST00000408515 105 ntBASIC0.27□□□□□ -2.37
HMGB1P09429 SNORA31.14-201ENST00000516728 116 ntBASIC0.27□□□□□ -2.37
HMGB1P09429 Y_RNA.697-201ENST00000516776 113 ntBASIC0.27□□□□□ -2.37
HMGB1P09429 AC011921.3-201ENST00000605540 361 ntBASIC0.27□□□□□ -2.37
HMGB1P09429 SNORA63-201ENST00000363450 132 ntBASIC0.26□□□□□ -2.37
HMGB1P09429 Y_RNA.174-201ENST00000363781 105 ntBASIC0.26□□□□□ -2.37
HMGB1P09429 RNU6-1229P-201ENST00000364295 107 ntBASIC0.26□□□□□ -2.37
HMGB1P09429 Y_RNA.326-201ENST00000365176 113 ntBASIC0.26□□□□□ -2.37
HMGB1P09429 MIR548H3-201ENST00000408771 118 ntBASIC0.26□□□□□ -2.37
HMGB1P09429 RNU5E-9P-201ENST00000411164 104 ntBASIC0.26□□□□□ -2.37
HMGB1P09429 RNA5SP436-201ENST00000516020 115 ntBASIC0.26□□□□□ -2.37
HMGB1P09429 Y_RNA.47-201ENST00000362697 108 ntBASIC0.25□□□□□ -2.37
HMGB1P09429 RNU6-923P-201ENST00000364753 107 ntBASIC0.25□□□□□ -2.37
HMGB1P09429 RNU6-815P-201ENST00000384080 113 ntBASIC0.25□□□□□ -2.37
HMGB1P09429 Y_RNA.518-201ENST00000384552 113 ntBASIC0.25□□□□□ -2.37
HMGB1P09429 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC0.25□□□□□ -2.37
HMGB1P09429 RNU6-765P-201ENST00000516916 99 ntBASIC0.25□□□□□ -2.37
HMGB1P09429 RNU6-1099P-201ENST00000363533 107 ntBASIC0.24□□□□□ -2.37
HMGB1P09429 Y_RNA.288-201ENST00000364854 92 ntBASIC0.24□□□□□ -2.37
HMGB1P09429 RNU2-59P-201ENST00000410482 191 ntBASIC0.24□□□□□ -2.37
HMGB1P09429 SUMO1P3-201ENST00000439961 304 ntBASIC0.24□□□□□ -2.37
HMGB1P09429 RNU6-863P-201ENST00000515989 104 ntBASIC0.24□□□□□ -2.37
HMGB1P09429 SNORA25.16-201ENST00000516741 121 ntBASIC0.24□□□□□ -2.37
HMGB1P09429 SCARNA15-202ENST00000516881 127 ntBASIC0.24□□□□□ -2.37
HMGB1P09429 AC078938.1-201ENST00000620993 318 ntBASIC0.24□□□□□ -2.37
HMGB1P09429 Y_RNA.149-201ENST00000363558 117 ntBASIC0.23□□□□□ -2.37
HMGB1P09429 Y_RNA.182-201ENST00000363880 111 ntBASIC0.23□□□□□ -2.37
HMGB1P09429 SNORD27-201ENST00000363981 72 ntBASIC0.23□□□□□ -2.37
HMGB1P09429 Y_RNA.459-201ENST00000384251 102 ntBASIC0.23□□□□□ -2.37
HMGB1P09429 RNU6-535P-201ENST00000384722 107 ntBASIC0.23□□□□□ -2.37
HMGB1P09429 MIR624-201ENST00000385217 97 ntBASIC0.23□□□□□ -2.37
HMGB1P09429 DEFB131E-201ENST00000532329 154 ntBASIC0.23□□□□□ -2.37
HMGB1P09429 MTND5P34-201ENST00000568888 325 ntBASIC0.23□□□□□ -2.37
HMGB1P09429 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.22□□□□□ -2.37
HMGB1P09429 Y_RNA.65-201ENST00000362846 100 ntBASIC0.22□□□□□ -2.37
HMGB1P09429 Y_RNA.145-201ENST00000363527 102 ntBASIC0.22□□□□□ -2.37
HMGB1P09429 RNY1P13-201ENST00000365030 105 ntBASIC0.22□□□□□ -2.37
HMGB1P09429 Y_RNA.536-201ENST00000384621 113 ntBASIC0.22□□□□□ -2.37
HMGB1P09429 RNA5SP227-201ENST00000516184 113 ntBASIC0.22□□□□□ -2.37
HMGB1P09429 AL117187.1-201ENST00000555482 181 ntBASIC0.22□□□□□ -2.37
HMGB1P09429 AC112693.2-201ENST00000556538 232 ntBASIC0.22□□□□□ -2.37
HMGB1P09429 MIR4431-201ENST00000579990 94 ntBASIC0.22□□□□□ -2.37
HMGB1P09429 MTND5P32-201ENST00000560711 1802 ntBASIC0.22□□□□□ -2.37
HMGB1P09429 SNORA25.7-201ENST00000364375 127 ntBASIC0.21□□□□□ -2.38
HMGB1P09429 RNU6-643P-201ENST00000384018 107 ntBASIC0.21□□□□□ -2.38
HMGB1P09429 RNU4-70P-201ENST00000384579 139 ntBASIC0.21□□□□□ -2.38
HMGB1P09429 RNU6-1086P-201ENST00000410930 100 ntBASIC0.21□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 187.6 ms