Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 RNU6-1190P-201ENST00000410811 104 ntBASIC1.47□□□□□ -2.17
PCDHA3Q9Y5H8 RPS3AP1-201ENST00000413190 320 ntBASIC1.47□□□□□ -2.17
PCDHA3Q9Y5H8 RNU7-45P-201ENST00000459460 63 ntBASIC1.47□□□□□ -2.17
PCDHA3Q9Y5H8 MIR3910-1-201ENST00000580936 111 ntBASIC1.47□□□□□ -2.17
PCDHA3Q9Y5H8 HSPE1P19-201ENST00000603327 295 ntBASIC1.47□□□□□ -2.17
PCDHA3Q9Y5H8 AL161722.3-201ENST00000605789 2983 ntBASIC1.47□□□□□ -2.17
PCDHA3Q9Y5H8 RNU6-647P-201ENST00000364243 107 ntBASIC1.46□□□□□ -2.18
PCDHA3Q9Y5H8 Y_RNA.354-201ENST00000365448 111 ntBASIC1.46□□□□□ -2.18
PCDHA3Q9Y5H8 AL158147.1-201ENST00000443970 75 ntBASIC1.46□□□□□ -2.18
PCDHA3Q9Y5H8 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.46□□□□□ -2.18
PCDHA3Q9Y5H8 MIR2115-201ENST00000516657 100 ntBASIC1.46□□□□□ -2.18
PCDHA3Q9Y5H8 AC133485.4-201ENST00000561835 220 ntBASIC1.46□□□□□ -2.18
PCDHA3Q9Y5H8 AC138907.4-201ENST00000570107 226 ntBASIC1.46□□□□□ -2.18
PCDHA3Q9Y5H8 AL645939.4-201ENST00000604495 135 ntBASIC1.46□□□□□ -2.18
PCDHA3Q9Y5H8 MIR6841-201ENST00000637129 72 ntBASIC1.46□□□□□ -2.18
PCDHA3Q9Y5H8 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
PCDHA3Q9Y5H8 Y_RNA.338-201ENST00000365320 114 ntBASIC1.45□□□□□ -2.18
PCDHA3Q9Y5H8 SNORD38B-201ENST00000384690 67 ntBASIC1.45□□□□□ -2.18
PCDHA3Q9Y5H8 AC090844.1-201ENST00000422019 156 ntBASIC1.45□□□□□ -2.18
PCDHA3Q9Y5H8 HMGN1P33-201ENST00000432945 451 ntBASIC1.45□□□□□ -2.18
PCDHA3Q9Y5H8 AC108729.3-201ENST00000513484 108 ntBASIC1.45□□□□□ -2.18
PCDHA3Q9Y5H8 RNU5E-3P-201ENST00000515913 68 ntBASIC1.45□□□□□ -2.18
PCDHA3Q9Y5H8 RNU6-240P-201ENST00000516098 97 ntBASIC1.45□□□□□ -2.18
PCDHA3Q9Y5H8 SNORD38B-202ENST00000625943 69 ntBASIC1.45□□□□□ -2.18
PCDHA3Q9Y5H8 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
PCDHA3Q9Y5H8 Y_RNA.294-201ENST00000364916 102 ntBASIC1.44□□□□□ -2.18
PCDHA3Q9Y5H8 MT-TN-201ENST00000387400 73 ntBASIC1.44□□□□□ -2.18
PCDHA3Q9Y5H8 RNA5SP144-201ENST00000410846 116 ntBASIC1.44□□□□□ -2.18
PCDHA3Q9Y5H8 RNU6-602P-201ENST00000411155 105 ntBASIC1.44□□□□□ -2.18
PCDHA3Q9Y5H8 POLR2J4-204ENST00000418424 324 ntBASIC1.44□□□□□ -2.18
PCDHA3Q9Y5H8 RPS29P23-201ENST00000458635 123 ntBASIC1.44□□□□□ -2.18
PCDHA3Q9Y5H8 RNU6-789P-201ENST00000517105 102 ntBASIC1.44□□□□□ -2.18
PCDHA3Q9Y5H8 MIR4303-201ENST00000581299 66 ntBASIC1.44□□□□□ -2.18
PCDHA3Q9Y5H8 AC108081.1-201ENST00000604358 221 ntBASIC1.44□□□□□ -2.18
PCDHA3Q9Y5H8 AL512598.1-201ENST00000610158 273 ntBASIC1.44□□□□□ -2.18
PCDHA3Q9Y5H8 SEPT14P17-201ENST00000617978 177 ntBASIC1.44□□□□□ -2.18
PCDHA3Q9Y5H8 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.43□□□□□ -2.18
PCDHA3Q9Y5H8 SNORA22.1-201ENST00000362701 134 ntBASIC1.43□□□□□ -2.18
PCDHA3Q9Y5H8 Y_RNA.363-201ENST00000365529 113 ntBASIC1.43□□□□□ -2.18
PCDHA3Q9Y5H8 SNORD26-201ENST00000384147 75 ntBASIC1.43□□□□□ -2.18
PCDHA3Q9Y5H8 SNORA80D-201ENST00000384488 135 ntBASIC1.43□□□□□ -2.18
PCDHA3Q9Y5H8 MIR758-201ENST00000390227 88 ntBASIC1.43□□□□□ -2.18
PCDHA3Q9Y5H8 RNU4-62P-201ENST00000410125 130 ntBASIC1.43□□□□□ -2.18
PCDHA3Q9Y5H8 RNU6-613P-201ENST00000410412 108 ntBASIC1.43□□□□□ -2.18
PCDHA3Q9Y5H8 RNU6-1211P-201ENST00000459179 105 ntBASIC1.43□□□□□ -2.18
PCDHA3Q9Y5H8 MIR4305-201ENST00000583252 102 ntBASIC1.43□□□□□ -2.18
PCDHA3Q9Y5H8 AL137067.1-201ENST00000615933 120 ntBASIC1.43□□□□□ -2.18
PCDHA3Q9Y5H8 MIR6516-201ENST00000630554 81 ntBASIC1.43□□□□□ -2.18
PCDHA3Q9Y5H8 RNU4-16P-201ENST00000364737 141 ntBASIC1.42□□□□□ -2.18
PCDHA3Q9Y5H8 Y_RNA.366-201ENST00000365540 102 ntBASIC1.42□□□□□ -2.18
PCDHA3Q9Y5H8 RNU6-910P-201ENST00000390844 107 ntBASIC1.42□□□□□ -2.18
PCDHA3Q9Y5H8 Y_RNA.617-201ENST00000410920 90 ntBASIC1.42□□□□□ -2.18
PCDHA3Q9Y5H8 RNU4-61P-201ENST00000411243 107 ntBASIC1.42□□□□□ -2.18
PCDHA3Q9Y5H8 BTF3P4-201ENST00000418852 495 ntBASIC1.42□□□□□ -2.18
PCDHA3Q9Y5H8 AL591704.2-201ENST00000421658 181 ntBASIC1.42□□□□□ -2.18
PCDHA3Q9Y5H8 AC244023.1-201ENST00000426884 112 ntBASIC1.42□□□□□ -2.18
PCDHA3Q9Y5H8 RNU6-971P-201ENST00000516920 106 ntBASIC1.42□□□□□ -2.18
PCDHA3Q9Y5H8 SNORA70.22-201ENST00000517160 124 ntBASIC1.42□□□□□ -2.18
PCDHA3Q9Y5H8 AC242498.1-201ENST00000604134 111 ntBASIC1.42□□□□□ -2.18
PCDHA3Q9Y5H8 AC021443.1-201ENST00000604478 211 ntBASIC1.42□□□□□ -2.18
PCDHA3Q9Y5H8 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.42□□□□□ -2.18
PCDHA3Q9Y5H8 AC132825.6-201ENST00000638861 357 ntBASIC1.42□□□□□ -2.18
PCDHA3Q9Y5H8 RNU6-959P-201ENST00000384671 107 ntBASIC1.41□□□□□ -2.18
PCDHA3Q9Y5H8 SNORD12-201ENST00000391002 90 ntBASIC1.41□□□□□ -2.18
PCDHA3Q9Y5H8 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.41□□□□□ -2.18
PCDHA3Q9Y5H8 AL022718.1-201ENST00000412004 84 ntBASIC1.41□□□□□ -2.18
PCDHA3Q9Y5H8 RN7SKP19-201ENST00000516016 252 ntBASIC1.41□□□□□ -2.18
PCDHA3Q9Y5H8 SNORD79.1-201ENST00000516069 84 ntBASIC1.41□□□□□ -2.18
PCDHA3Q9Y5H8 MIR4264-201ENST00000583520 66 ntBASIC1.41□□□□□ -2.18
PCDHA3Q9Y5H8 snoU13.31-201ENST00000607291 104 ntBASIC1.41□□□□□ -2.18
PCDHA3Q9Y5H8 MIR377-201ENST00000362145 69 ntBASIC1.4□□□□□ -2.19
PCDHA3Q9Y5H8 RNA5SP327-201ENST00000362494 101 ntBASIC1.4□□□□□ -2.19
PCDHA3Q9Y5H8 RNU6-80P-201ENST00000384195 107 ntBASIC1.4□□□□□ -2.19
PCDHA3Q9Y5H8 SNORA75.2-201ENST00000391138 150 ntBASIC1.4□□□□□ -2.19
PCDHA3Q9Y5H8 SNORA75.3-201ENST00000391231 150 ntBASIC1.4□□□□□ -2.19
PCDHA3Q9Y5H8 RNU6-955P-201ENST00000410497 104 ntBASIC1.4□□□□□ -2.19
PCDHA3Q9Y5H8 RNU7-21P-201ENST00000459430 62 ntBASIC1.4□□□□□ -2.19
PCDHA3Q9Y5H8 RNU6-406P-201ENST00000516470 107 ntBASIC1.4□□□□□ -2.19
PCDHA3Q9Y5H8 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.4□□□□□ -2.19
PCDHA3Q9Y5H8 MIR4498-201ENST00000577599 66 ntBASIC1.4□□□□□ -2.19
PCDHA3Q9Y5H8 AP000753.3-201ENST00000604083 169 ntBASIC1.4□□□□□ -2.19
PCDHA3Q9Y5H8 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.39□□□□□ -2.19
PCDHA3Q9Y5H8 SNORD115-2-201ENST00000362842 82 ntBASIC1.39□□□□□ -2.19
PCDHA3Q9Y5H8 SNORD115-20-201ENST00000365099 82 ntBASIC1.39□□□□□ -2.19
PCDHA3Q9Y5H8 RNU7-164P-201ENST00000459221 62 ntBASIC1.39□□□□□ -2.19
PCDHA3Q9Y5H8 RNU2-35P-201ENST00000516446 142 ntBASIC1.39□□□□□ -2.19
PCDHA3Q9Y5H8 IGKV1-22-201ENST00000524313 326 ntBASIC1.39□□□□□ -2.19
PCDHA3Q9Y5H8 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.39□□□□□ -2.19
PCDHA3Q9Y5H8 Y_RNA.298-201ENST00000364960 107 ntBASIC1.38□□□□□ -2.19
PCDHA3Q9Y5H8 RNU6-580P-201ENST00000365159 107 ntBASIC1.38□□□□□ -2.19
PCDHA3Q9Y5H8 SNORD113-1-201ENST00000365321 69 ntBASIC1.38□□□□□ -2.19
PCDHA3Q9Y5H8 SNORA25-201ENST00000384384 134 ntBASIC1.38□□□□□ -2.19
PCDHA3Q9Y5H8 MIR150-201ENST00000385048 84 ntBASIC1.38□□□□□ -2.19
PCDHA3Q9Y5H8 AP1B1P2-201ENST00000416196 106 ntBASIC1.38□□□□□ -2.19
PCDHA3Q9Y5H8 RNU6-1258P-201ENST00000516911 111 ntBASIC1.38□□□□□ -2.19
PCDHA3Q9Y5H8 RNU1-92P-201ENST00000517017 135 ntBASIC1.38□□□□□ -2.19
PCDHA3Q9Y5H8 RNU6-235P-201ENST00000362644 107 ntBASIC1.37□□□□□ -2.19
PCDHA3Q9Y5H8 Y_RNA.71-201ENST00000362892 104 ntBASIC1.37□□□□□ -2.19
PCDHA3Q9Y5H8 RNA5SP136-201ENST00000410906 107 ntBASIC1.37□□□□□ -2.19
PCDHA3Q9Y5H8 RNU1-123P-201ENST00000458950 160 ntBASIC1.37□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 169 ms