Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 Y_RNA.461-201ENST00000384263 103 ntBASIC0.37□□□□□ -2.35
FOXA2Q9Y261 RNU6-342P-201ENST00000384521 104 ntBASIC0.37□□□□□ -2.35
FOXA2Q9Y261 RNU6-1160P-201ENST00000384546 104 ntBASIC0.37□□□□□ -2.35
FOXA2Q9Y261 SNORA79-201ENST00000408376 140 ntBASIC0.37□□□□□ -2.35
FOXA2Q9Y261 AL442663.2-201ENST00000554385 511 ntBASIC0.37□□□□□ -2.35
FOXA2Q9Y261 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC0.37□□□□□ -2.35
FOXA2Q9Y261 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.37□□□□□ -2.35
FOXA2Q9Y261 AC022709.1-201ENST00000615967 87 ntBASIC0.37□□□□□ -2.35
FOXA2Q9Y261 Y_RNA.23-201ENST00000362496 106 ntBASIC0.36□□□□□ -2.35
FOXA2Q9Y261 RNA5SP499-201ENST00000363982 119 ntBASIC0.36□□□□□ -2.35
FOXA2Q9Y261 Y_RNA.269-201ENST00000364685 89 ntBASIC0.36□□□□□ -2.35
FOXA2Q9Y261 Y_RNA.518-201ENST00000384552 113 ntBASIC0.36□□□□□ -2.35
FOXA2Q9Y261 Y_RNA.574-201ENST00000384766 95 ntBASIC0.36□□□□□ -2.35
FOXA2Q9Y261 RNU6-381P-201ENST00000391259 108 ntBASIC0.36□□□□□ -2.35
FOXA2Q9Y261 SNORD100-201ENST00000408573 76 ntBASIC0.36□□□□□ -2.35
FOXA2Q9Y261 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.36□□□□□ -2.35
FOXA2Q9Y261 SNORD92-201ENST00000585078 85 ntBASIC0.36□□□□□ -2.35
FOXA2Q9Y261 AC008608.1-201ENST00000603910 127 ntBASIC0.36□□□□□ -2.35
FOXA2Q9Y261 RNU6-653P-201ENST00000363074 106 ntBASIC0.35□□□□□ -2.35
FOXA2Q9Y261 RNA5SP117-201ENST00000365294 118 ntBASIC0.35□□□□□ -2.35
FOXA2Q9Y261 RNU6-472P-201ENST00000384299 107 ntBASIC0.35□□□□□ -2.35
FOXA2Q9Y261 MIR563-201ENST00000385080 79 ntBASIC0.35□□□□□ -2.35
FOXA2Q9Y261 MIR548F4-201ENST00000408515 105 ntBASIC0.35□□□□□ -2.35
FOXA2Q9Y261 RNA5SP237-201ENST00000410414 113 ntBASIC0.35□□□□□ -2.35
FOXA2Q9Y261 SNORD71-201ENST00000411292 86 ntBASIC0.35□□□□□ -2.35
FOXA2Q9Y261 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.35□□□□□ -2.35
FOXA2Q9Y261 AC098934.3-201ENST00000430450 190 ntBASIC0.35□□□□□ -2.35
FOXA2Q9Y261 snoU13.18-201ENST00000459483 104 ntBASIC0.35□□□□□ -2.35
FOXA2Q9Y261 RNU7-80P-201ENST00000459562 61 ntBASIC0.35□□□□□ -2.35
FOXA2Q9Y261 SNORA25.12-201ENST00000516202 82 ntBASIC0.35□□□□□ -2.35
FOXA2Q9Y261 RNU6-561P-201ENST00000516222 102 ntBASIC0.35□□□□□ -2.35
FOXA2Q9Y261 MIR4643-201ENST00000577473 78 ntBASIC0.35□□□□□ -2.35
FOXA2Q9Y261 uc_338.16-201ENST00000621804 95 ntBASIC0.35□□□□□ -2.35
FOXA2Q9Y261 AC243829.3-201ENST00000622177 108 ntBASIC0.35□□□□□ -2.35
FOXA2Q9Y261 MIR6717-201ENST00000622747 73 ntBASIC0.35□□□□□ -2.35
FOXA2Q9Y261 MIR376A2-201ENST00000636782 80 ntBASIC0.35□□□□□ -2.35
FOXA2Q9Y261 MIRLET7D-201ENST00000362263 87 ntBASIC0.34□□□□□ -2.36
FOXA2Q9Y261 Y_RNA.176-201ENST00000363815 109 ntBASIC0.34□□□□□ -2.36
FOXA2Q9Y261 Y_RNA.262-201ENST00000364641 102 ntBASIC0.34□□□□□ -2.36
FOXA2Q9Y261 RNU6-728P-201ENST00000365375 104 ntBASIC0.34□□□□□ -2.36
FOXA2Q9Y261 Y_RNA.352-201ENST00000365439 102 ntBASIC0.34□□□□□ -2.36
FOXA2Q9Y261 RNU4-17P-201ENST00000365598 141 ntBASIC0.34□□□□□ -2.36
FOXA2Q9Y261 Y_RNA.454-201ENST00000384224 113 ntBASIC0.34□□□□□ -2.36
FOXA2Q9Y261 MIR606-201ENST00000384851 96 ntBASIC0.34□□□□□ -2.36
FOXA2Q9Y261 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.34□□□□□ -2.36
FOXA2Q9Y261 RNU6-1132P-201ENST00000459214 107 ntBASIC0.34□□□□□ -2.36
FOXA2Q9Y261 AC002350.1-201ENST00000490759 375 ntBASIC0.34□□□□□ -2.36
FOXA2Q9Y261 MIR3129-201ENST00000581095 76 ntBASIC0.34□□□□□ -2.36
FOXA2Q9Y261 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.34□□□□□ -2.36
FOXA2Q9Y261 MIR30D-201ENST00000362283 70 ntBASIC0.33□□□□□ -2.36
FOXA2Q9Y261 Y_RNA.542-201ENST00000384641 111 ntBASIC0.33□□□□□ -2.36
FOXA2Q9Y261 SNORA26.6-201ENST00000391256 115 ntBASIC0.33□□□□□ -2.36
FOXA2Q9Y261 SNORD93-201ENST00000408813 74 ntBASIC0.33□□□□□ -2.36
FOXA2Q9Y261 Y_RNA.618-201ENST00000410949 107 ntBASIC0.33□□□□□ -2.36
FOXA2Q9Y261 RNU7-45P-201ENST00000459460 63 ntBASIC0.33□□□□□ -2.36
FOXA2Q9Y261 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC0.33□□□□□ -2.36
FOXA2Q9Y261 AC008737.2-201ENST00000599446 118 ntBASIC0.33□□□□□ -2.36
FOXA2Q9Y261 Y_RNA.812-201ENST00000610788 101 ntBASIC0.33□□□□□ -2.36
FOXA2Q9Y261 AL442067.1-201ENST00000613261 223 ntBASIC0.33□□□□□ -2.36
FOXA2Q9Y261 Y_RNA.784-201ENST00000613803 101 ntBASIC0.33□□□□□ -2.36
FOXA2Q9Y261 Y_RNA.787-201ENST00000616522 101 ntBASIC0.33□□□□□ -2.36
FOXA2Q9Y261 Y_RNA.780-201ENST00000617336 101 ntBASIC0.33□□□□□ -2.36
FOXA2Q9Y261 Y_RNA.801-201ENST00000619005 101 ntBASIC0.33□□□□□ -2.36
FOXA2Q9Y261 MIR6515-201ENST00000619843 57 ntBASIC0.33□□□□□ -2.36
FOXA2Q9Y261 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.33□□□□□ -2.36
FOXA2Q9Y261 Y_RNA.54-201ENST00000362766 105 ntBASIC0.32□□□□□ -2.36
FOXA2Q9Y261 Y_RNA.76-201ENST00000362931 109 ntBASIC0.32□□□□□ -2.36
FOXA2Q9Y261 SNORA63-201ENST00000363450 132 ntBASIC0.32□□□□□ -2.36
FOXA2Q9Y261 Y_RNA.145-201ENST00000363527 102 ntBASIC0.32□□□□□ -2.36
FOXA2Q9Y261 RNU6-103P-201ENST00000363686 107 ntBASIC0.32□□□□□ -2.36
FOXA2Q9Y261 Y_RNA.277-201ENST00000364754 102 ntBASIC0.32□□□□□ -2.36
FOXA2Q9Y261 RNU6-1292P-201ENST00000383856 107 ntBASIC0.32□□□□□ -2.36
FOXA2Q9Y261 Y_RNA.396-201ENST00000383949 103 ntBASIC0.32□□□□□ -2.36
FOXA2Q9Y261 SNORA50A-201ENST00000384225 134 ntBASIC0.32□□□□□ -2.36
FOXA2Q9Y261 Y_RNA.508-201ENST00000384502 114 ntBASIC0.32□□□□□ -2.36
FOXA2Q9Y261 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.32□□□□□ -2.36
FOXA2Q9Y261 RNU7-70P-201ENST00000516941 66 ntBASIC0.32□□□□□ -2.36
FOXA2Q9Y261 RNU6-448P-201ENST00000517052 107 ntBASIC0.32□□□□□ -2.36
FOXA2Q9Y261 AL117187.1-201ENST00000555482 181 ntBASIC0.32□□□□□ -2.36
FOXA2Q9Y261 MIR3152-201ENST00000579801 74 ntBASIC0.32□□□□□ -2.36
FOXA2Q9Y261 MIR5197-201ENST00000583721 112 ntBASIC0.32□□□□□ -2.36
FOXA2Q9Y261 AC011921.3-201ENST00000605540 361 ntBASIC0.32□□□□□ -2.36
FOXA2Q9Y261 AL596211.1-201ENST00000569873 2277 ntBASIC0.31□□□□□ -2.36
FOXA2Q9Y261 Y_RNA.47-201ENST00000362697 108 ntBASIC0.31□□□□□ -2.36
FOXA2Q9Y261 Y_RNA.292-201ENST00000364904 97 ntBASIC0.31□□□□□ -2.36
FOXA2Q9Y261 Y_RNA.355-201ENST00000365462 98 ntBASIC0.31□□□□□ -2.36
FOXA2Q9Y261 SNORA20-201ENST00000384662 132 ntBASIC0.31□□□□□ -2.36
FOXA2Q9Y261 MIR216A-201ENST00000385063 110 ntBASIC0.31□□□□□ -2.36
FOXA2Q9Y261 RNU4-43P-201ENST00000410628 137 ntBASIC0.31□□□□□ -2.36
FOXA2Q9Y261 RNU4-83P-201ENST00000410863 133 ntBASIC0.31□□□□□ -2.36
FOXA2Q9Y261 SNORA40.8-201ENST00000411034 126 ntBASIC0.31□□□□□ -2.36
FOXA2Q9Y261 RNA5SP134-201ENST00000516492 96 ntBASIC0.31□□□□□ -2.36
FOXA2Q9Y261 RNA5SP94-201ENST00000516917 108 ntBASIC0.31□□□□□ -2.36
FOXA2Q9Y261 MIR4711-201ENST00000578274 70 ntBASIC0.31□□□□□ -2.36
FOXA2Q9Y261 AL365205.2-201ENST00000594586 68 ntBASIC0.31□□□□□ -2.36
FOXA2Q9Y261 AC243829.6-201ENST00000612652 106 ntBASIC0.31□□□□□ -2.36
FOXA2Q9Y261 AC091932.4-201ENST00000623386 200 ntBASIC0.31□□□□□ -2.36
FOXA2Q9Y261 AC090625.1-201ENST00000357130 210 ntBASIC0.3□□□□□ -2.36
FOXA2Q9Y261 RNA5SP517-201ENST00000364724 117 ntBASIC0.3□□□□□ -2.36
FOXA2Q9Y261 MIR936-201ENST00000401264 98 ntBASIC0.3□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms