Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 MIR4777-201ENST00000583710 86 ntBASIC2.65□□□□□ -1.99
NOD1Q9Y239 AC096720.1-201ENST00000604441 183 ntBASIC2.65□□□□□ -1.99
NOD1Q9Y239 U7.3-201ENST00000616123 62 ntBASIC2.65□□□□□ -1.99
NOD1Q9Y239 MIR4251-201ENST00000635819 61 ntBASIC2.65□□□□□ -1.99
NOD1Q9Y239 AC131280.1-202ENST00000624067 4211 ntBASIC2.65□□□□□ -1.99
NOD1Q9Y239 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
NOD1Q9Y239 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
NOD1Q9Y239 MRPL35P3-201ENST00000421557 364 ntBASIC2.64□□□□□ -1.99
NOD1Q9Y239 AC108729.3-201ENST00000513484 108 ntBASIC2.64□□□□□ -1.99
NOD1Q9Y239 RNU6-162P-201ENST00000516228 103 ntBASIC2.64□□□□□ -1.99
NOD1Q9Y239 RNU7-35P-201ENST00000517174 62 ntBASIC2.64□□□□□ -1.99
NOD1Q9Y239 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.64□□□□□ -1.99
NOD1Q9Y239 MIR548AO-201ENST00000579992 96 ntBASIC2.64□□□□□ -1.99
NOD1Q9Y239 Y_RNA.95-201ENST00000363079 95 ntBASIC2.63□□□□□ -1.99
NOD1Q9Y239 RNA5SP259-201ENST00000365541 109 ntBASIC2.63□□□□□ -1.99
NOD1Q9Y239 AL451046.2-201ENST00000403074 277 ntBASIC2.63□□□□□ -1.99
NOD1Q9Y239 HMGN2P35-201ENST00000412164 270 ntBASIC2.63□□□□□ -1.99
NOD1Q9Y239 RN7SL499P-201ENST00000481141 276 ntBASIC2.63□□□□□ -1.99
NOD1Q9Y239 RNU6-826P-201ENST00000516827 104 ntBASIC2.63□□□□□ -1.99
NOD1Q9Y239 MIR206-201ENST00000384872 86 ntBASIC2.62□□□□□ -1.99
NOD1Q9Y239 MIR513A1-201ENST00000385138 129 ntBASIC2.62□□□□□ -1.99
NOD1Q9Y239 RNU6-1086P-201ENST00000410930 100 ntBASIC2.62□□□□□ -1.99
NOD1Q9Y239 RNU7-41P-201ENST00000515917 61 ntBASIC2.62□□□□□ -1.99
NOD1Q9Y239 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC2.62□□□□□ -1.99
NOD1Q9Y239 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.62□□□□□ -1.99
NOD1Q9Y239 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
NOD1Q9Y239 Y_RNA.96-201ENST00000363092 109 ntBASIC2.61□□□□□ -1.99
NOD1Q9Y239 RNA5SP212-201ENST00000391223 107 ntBASIC2.61□□□□□ -1.99
NOD1Q9Y239 MIR1289-2-201ENST00000408360 111 ntBASIC2.61□□□□□ -1.99
NOD1Q9Y239 AL161935.2-201ENST00000414627 60 ntBASIC2.61□□□□□ -1.99
NOD1Q9Y239 AC090844.1-201ENST00000422019 156 ntBASIC2.61□□□□□ -1.99
NOD1Q9Y239 JTBP1-201ENST00000441314 247 ntBASIC2.61□□□□□ -1.99
NOD1Q9Y239 snoU13.23-201ENST00000458863 104 ntBASIC2.61□□□□□ -1.99
NOD1Q9Y239 RN7SKP12-201ENST00000516275 143 ntBASIC2.61□□□□□ -1.99
NOD1Q9Y239 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.61□□□□□ -1.99
NOD1Q9Y239 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
NOD1Q9Y239 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
NOD1Q9Y239 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
NOD1Q9Y239 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
NOD1Q9Y239 SNORA6-201ENST00000384033 151 ntBASIC2.6□□□□□ -1.99
NOD1Q9Y239 RNU6-439P-201ENST00000384188 106 ntBASIC2.6□□□□□ -1.99
NOD1Q9Y239 RNU6-820P-201ENST00000384273 107 ntBASIC2.6□□□□□ -1.99
NOD1Q9Y239 Y_RNA.467-201ENST00000384297 102 ntBASIC2.6□□□□□ -1.99
NOD1Q9Y239 AC108210.2-201ENST00000503681 201 ntBASIC2.6□□□□□ -1.99
NOD1Q9Y239 RNU6ATAC17P-201ENST00000516074 71 ntBASIC2.6□□□□□ -1.99
NOD1Q9Y239 RNU7-79P-201ENST00000516082 62 ntBASIC2.6□□□□□ -1.99
NOD1Q9Y239 AC022254.1-201ENST00000567857 235 ntBASIC2.6□□□□□ -1.99
NOD1Q9Y239 MIR3935-201ENST00000583472 104 ntBASIC2.6□□□□□ -1.99
NOD1Q9Y239 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.59□□□□□ -1.99
NOD1Q9Y239 MIR494-201ENST00000349529 81 ntBASIC2.59□□□□□ -1.99
NOD1Q9Y239 RNA5SP173-201ENST00000364857 136 ntBASIC2.59□□□□□ -1.99
NOD1Q9Y239 SNORD38B-201ENST00000384690 67 ntBASIC2.59□□□□□ -1.99
NOD1Q9Y239 RPL31P63-201ENST00000422565 375 ntBASIC2.59□□□□□ -1.99
NOD1Q9Y239 AL591806.2-201ENST00000433122 173 ntBASIC2.59□□□□□ -1.99
NOD1Q9Y239 RPS12P2-201ENST00000439728 269 ntBASIC2.59□□□□□ -1.99
NOD1Q9Y239 UBL5P1-201ENST00000507979 193 ntBASIC2.59□□□□□ -1.99
NOD1Q9Y239 SNORD111.1-201ENST00000516421 86 ntBASIC2.59□□□□□ -1.99
NOD1Q9Y239 SNORD67.1-201ENST00000516618 108 ntBASIC2.59□□□□□ -1.99
NOD1Q9Y239 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC2.59□□□□□ -1.99
NOD1Q9Y239 MIR376B-201ENST00000614515 100 ntBASIC2.59□□□□□ -1.99
NOD1Q9Y239 SNORD38B-202ENST00000625943 69 ntBASIC2.59□□□□□ -1.99
NOD1Q9Y239 MIR6733-201ENST00000635723 61 ntBASIC2.59□□□□□ -1.99
NOD1Q9Y239 SNORD114-1-201ENST00000362705 72 ntBASIC2.58□□□□□ -2
NOD1Q9Y239 RNU6-1237P-201ENST00000384777 107 ntBASIC2.58□□□□□ -2
NOD1Q9Y239 RNU6-1307P-201ENST00000391012 103 ntBASIC2.58□□□□□ -2
NOD1Q9Y239 AC019129.1-201ENST00000403786 261 ntBASIC2.58□□□□□ -2
NOD1Q9Y239 BTF3P4-201ENST00000418852 495 ntBASIC2.58□□□□□ -2
NOD1Q9Y239 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.58□□□□□ -2
NOD1Q9Y239 Y_RNA.705-201ENST00000516862 110 ntBASIC2.58□□□□□ -2
NOD1Q9Y239 AC080100.1-201ENST00000624239 5356 ntBASIC2.58□□□□□ -2
NOD1Q9Y239 Y_RNA.247-201ENST00000364500 92 ntBASIC2.57□□□□□ -2
NOD1Q9Y239 AC009474.2-201ENST00000451383 136 ntBASIC2.57□□□□□ -2
NOD1Q9Y239 AC015712.3-201ENST00000559380 164 ntBASIC2.57□□□□□ -2
NOD1Q9Y239 MIR4446-201ENST00000578505 67 ntBASIC2.57□□□□□ -2
NOD1Q9Y239 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC2.57□□□□□ -2
NOD1Q9Y239 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC2.57□□□□□ -2
NOD1Q9Y239 AC016717.2-201ENST00000609089 5141 ntBASIC2.56□□□□□ -2
NOD1Q9Y239 Y_RNA.17-201ENST00000362433 111 ntBASIC2.56□□□□□ -2
NOD1Q9Y239 RNY1P10-201ENST00000363268 113 ntBASIC2.56□□□□□ -2
NOD1Q9Y239 Y_RNA.448-201ENST00000384185 108 ntBASIC2.56□□□□□ -2
NOD1Q9Y239 Y_RNA.593-201ENST00000410292 98 ntBASIC2.56□□□□□ -2
NOD1Q9Y239 RNU6-887P-201ENST00000410660 100 ntBASIC2.56□□□□□ -2
NOD1Q9Y239 AC109327.2-201ENST00000448339 378 ntBASIC2.56□□□□□ -2
NOD1Q9Y239 RNU6-922P-201ENST00000516753 99 ntBASIC2.56□□□□□ -2
NOD1Q9Y239 MIR4439-201ENST00000583746 80 ntBASIC2.56□□□□□ -2
NOD1Q9Y239 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
NOD1Q9Y239 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.55□□□□□ -2
NOD1Q9Y239 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
NOD1Q9Y239 SNORA16B-201ENST00000364674 135 ntBASIC2.55□□□□□ -2
NOD1Q9Y239 MIR34C-201ENST00000384831 77 ntBASIC2.55□□□□□ -2
NOD1Q9Y239 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.55□□□□□ -2
NOD1Q9Y239 RNU6-972P-201ENST00000391208 107 ntBASIC2.55□□□□□ -2
NOD1Q9Y239 RNU6ATAC41P-201ENST00000408600 126 ntBASIC2.55□□□□□ -2
NOD1Q9Y239 RNU2-40P-201ENST00000410833 196 ntBASIC2.55□□□□□ -2
NOD1Q9Y239 RPS29P28-201ENST00000446439 141 ntBASIC2.55□□□□□ -2
NOD1Q9Y239 RNU6-1006P-201ENST00000516998 103 ntBASIC2.55□□□□□ -2
NOD1Q9Y239 snoMBII-202.2-201ENST00000517263 86 ntBASIC2.55□□□□□ -2
NOD1Q9Y239 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.55□□□□□ -2
NOD1Q9Y239 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC2.55□□□□□ -2
NOD1Q9Y239 AC105081.1-201ENST00000617727 106 ntBASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 183.3 ms