Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 SNORA3A-201ENST00000364113 130 ntBASIC2.36□□□□□ -2.03
AP4E1Q9UPM8 RNY1P1-201ENST00000364372 112 ntBASIC2.36□□□□□ -2.03
AP4E1Q9UPM8 RNU6-1067P-201ENST00000384752 107 ntBASIC2.36□□□□□ -2.03
AP4E1Q9UPM8 RNA5SP270-201ENST00000411361 118 ntBASIC2.36□□□□□ -2.03
AP4E1Q9UPM8 SNORA31.17-201ENST00000516953 127 ntBASIC2.36□□□□□ -2.03
AP4E1Q9UPM8 MIR4435-1-201ENST00000582552 80 ntBASIC2.36□□□□□ -2.03
AP4E1Q9UPM8 MIR4439-201ENST00000583746 80 ntBASIC2.36□□□□□ -2.03
AP4E1Q9UPM8 AC096720.1-201ENST00000604441 183 ntBASIC2.36□□□□□ -2.03
AP4E1Q9UPM8 U1.36-201ENST00000620684 176 ntBASIC2.36□□□□□ -2.03
AP4E1Q9UPM8 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
AP4E1Q9UPM8 MIR449A-201ENST00000362113 91 ntBASIC2.35□□□□□ -2.03
AP4E1Q9UPM8 RNU6-228P-201ENST00000362700 106 ntBASIC2.35□□□□□ -2.03
AP4E1Q9UPM8 RNU6-219P-201ENST00000364728 107 ntBASIC2.35□□□□□ -2.03
AP4E1Q9UPM8 MIR524-201ENST00000385242 87 ntBASIC2.35□□□□□ -2.03
AP4E1Q9UPM8 RNU6-972P-201ENST00000391208 107 ntBASIC2.35□□□□□ -2.03
AP4E1Q9UPM8 RN7SL429P-201ENST00000479090 223 ntBASIC2.35□□□□□ -2.03
AP4E1Q9UPM8 RN7SL489P-201ENST00000486185 223 ntBASIC2.35□□□□□ -2.03
AP4E1Q9UPM8 RN7SL327P-201ENST00000488659 223 ntBASIC2.35□□□□□ -2.03
AP4E1Q9UPM8 SNORA31.25-201ENST00000517242 134 ntBASIC2.35□□□□□ -2.03
AP4E1Q9UPM8 MIR4764-201ENST00000580680 88 ntBASIC2.35□□□□□ -2.03
AP4E1Q9UPM8 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC2.35□□□□□ -2.03
AP4E1Q9UPM8 RN7SL853P-201ENST00000617250 223 ntBASIC2.35□□□□□ -2.03
AP4E1Q9UPM8 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
AP4E1Q9UPM8 RNU6-402P-201ENST00000410678 103 ntBASIC2.34□□□□□ -2.03
AP4E1Q9UPM8 RNU6-602P-201ENST00000411155 105 ntBASIC2.34□□□□□ -2.03
AP4E1Q9UPM8 AC245047.7-201ENST00000440265 293 ntBASIC2.34□□□□□ -2.03
AP4E1Q9UPM8 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.04
AP4E1Q9UPM8 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.34□□□□□ -2.04
AP4E1Q9UPM8 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.33□□□□□ -2.04
AP4E1Q9UPM8 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.33□□□□□ -2.04
AP4E1Q9UPM8 RNU6-1123P-201ENST00000362347 106 ntBASIC2.33□□□□□ -2.04
AP4E1Q9UPM8 RNU4-82P-201ENST00000362443 140 ntBASIC2.33□□□□□ -2.04
AP4E1Q9UPM8 Y_RNA.140-201ENST00000363474 103 ntBASIC2.33□□□□□ -2.04
AP4E1Q9UPM8 RNU6-813P-201ENST00000384691 107 ntBASIC2.33□□□□□ -2.04
AP4E1Q9UPM8 U8.15-201ENST00000390947 134 ntBASIC2.33□□□□□ -2.04
AP4E1Q9UPM8 RNU6ATAC41P-201ENST00000408600 126 ntBASIC2.33□□□□□ -2.04
AP4E1Q9UPM8 AC109327.2-201ENST00000448339 378 ntBASIC2.33□□□□□ -2.04
AP4E1Q9UPM8 AC121758.2-201ENST00000553271 193 ntBASIC2.33□□□□□ -2.04
AP4E1Q9UPM8 MIR6895-201ENST00000613497 78 ntBASIC2.33□□□□□ -2.04
AP4E1Q9UPM8 IGLL4P-201ENST00000614590 133 ntBASIC2.33□□□□□ -2.04
AP4E1Q9UPM8 SEPT14P17-201ENST00000617978 177 ntBASIC2.33□□□□□ -2.04
AP4E1Q9UPM8 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.33□□□□□ -2.04
AP4E1Q9UPM8 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.33□□□□□ -2.04
AP4E1Q9UPM8 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.33□□□□□ -2.04
AP4E1Q9UPM8 AC005336.3-201ENST00000623833 2679 ntBASIC2.32□□□□□ -2.04
AP4E1Q9UPM8 RNU6-203P-201ENST00000384038 104 ntBASIC2.32□□□□□ -2.04
AP4E1Q9UPM8 RNU6-1124P-201ENST00000384169 107 ntBASIC2.32□□□□□ -2.04
AP4E1Q9UPM8 SNORD116-22-201ENST00000384430 92 ntBASIC2.32□□□□□ -2.04
AP4E1Q9UPM8 MIR34C-201ENST00000384831 77 ntBASIC2.32□□□□□ -2.04
AP4E1Q9UPM8 MIR221-201ENST00000385135 110 ntBASIC2.32□□□□□ -2.04
AP4E1Q9UPM8 AL023284.1-201ENST00000403956 276 ntBASIC2.32□□□□□ -2.04
AP4E1Q9UPM8 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC2.32□□□□□ -2.04
AP4E1Q9UPM8 MIR3202-2-201ENST00000635980 79 ntBASIC2.32□□□□□ -2.04
AP4E1Q9UPM8 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
AP4E1Q9UPM8 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
AP4E1Q9UPM8 SNORD116-10-201ENST00000363791 102 ntBASIC2.31□□□□□ -2.04
AP4E1Q9UPM8 SNORD38.1-201ENST00000363863 68 ntBASIC2.31□□□□□ -2.04
AP4E1Q9UPM8 RNU6-497P-201ENST00000365316 104 ntBASIC2.31□□□□□ -2.04
AP4E1Q9UPM8 MIR194-1-201ENST00000384892 85 ntBASIC2.31□□□□□ -2.04
AP4E1Q9UPM8 RNU6-360P-201ENST00000390944 104 ntBASIC2.31□□□□□ -2.04
AP4E1Q9UPM8 RNU4-53P-201ENST00000410828 140 ntBASIC2.31□□□□□ -2.04
AP4E1Q9UPM8 AL445685.2-201ENST00000422551 342 ntBASIC2.31□□□□□ -2.04
AP4E1Q9UPM8 RPL39P39-201ENST00000455840 151 ntBASIC2.31□□□□□ -2.04
AP4E1Q9UPM8 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.31□□□□□ -2.04
AP4E1Q9UPM8 RNA5SP395-201ENST00000516567 118 ntBASIC2.31□□□□□ -2.04
AP4E1Q9UPM8 SNORD67.1-201ENST00000516618 108 ntBASIC2.31□□□□□ -2.04
AP4E1Q9UPM8 RNU6-267P-201ENST00000516714 103 ntBASIC2.31□□□□□ -2.04
AP4E1Q9UPM8 RNU7-193P-201ENST00000516723 65 ntBASIC2.31□□□□□ -2.04
AP4E1Q9UPM8 MIR548AO-201ENST00000579992 96 ntBASIC2.31□□□□□ -2.04
AP4E1Q9UPM8 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.31□□□□□ -2.04
AP4E1Q9UPM8 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
AP4E1Q9UPM8 MIRLET7G-201ENST00000362280 84 ntBASIC2.3□□□□□ -2.04
AP4E1Q9UPM8 RNU6-1163P-201ENST00000364516 107 ntBASIC2.3□□□□□ -2.04
AP4E1Q9UPM8 RNU6-1276P-201ENST00000365372 104 ntBASIC2.3□□□□□ -2.04
AP4E1Q9UPM8 SNORD58A-201ENST00000383875 65 ntBASIC2.3□□□□□ -2.04
AP4E1Q9UPM8 RNU6-979P-201ENST00000383896 107 ntBASIC2.3□□□□□ -2.04
AP4E1Q9UPM8 RNA5SP225-201ENST00000410874 135 ntBASIC2.3□□□□□ -2.04
AP4E1Q9UPM8 RNU7-137P-201ENST00000516788 62 ntBASIC2.3□□□□□ -2.04
AP4E1Q9UPM8 MIR3124-201ENST00000582636 67 ntBASIC2.3□□□□□ -2.04
AP4E1Q9UPM8 AP006437.1-201ENST00000641440 3685 ntBASIC2.3□□□□□ -2.04
AP4E1Q9UPM8 RNA5SP126-201ENST00000365092 109 ntBASIC2.29□□□□□ -2.04
AP4E1Q9UPM8 Y_RNA.354-201ENST00000365448 111 ntBASIC2.29□□□□□ -2.04
AP4E1Q9UPM8 Y_RNA.448-201ENST00000384185 108 ntBASIC2.29□□□□□ -2.04
AP4E1Q9UPM8 Y_RNA.620-201ENST00000411009 88 ntBASIC2.29□□□□□ -2.04
AP4E1Q9UPM8 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.29□□□□□ -2.04
AP4E1Q9UPM8 CYP3A52P-201ENST00000563326 91 ntBASIC2.29□□□□□ -2.04
AP4E1Q9UPM8 MIR5588-201ENST00000581890 63 ntBASIC2.29□□□□□ -2.04
AP4E1Q9UPM8 MIR4668-201ENST00000582284 70 ntBASIC2.29□□□□□ -2.04
AP4E1Q9UPM8 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.29□□□□□ -2.04
AP4E1Q9UPM8 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC2.29□□□□□ -2.04
AP4E1Q9UPM8 RNU6-787P-201ENST00000384032 107 ntBASIC2.28□□□□□ -2.04
AP4E1Q9UPM8 MIR520C-201ENST00000385005 87 ntBASIC2.28□□□□□ -2.04
AP4E1Q9UPM8 MIR653-201ENST00000385279 96 ntBASIC2.28□□□□□ -2.04
AP4E1Q9UPM8 RNU6-1321P-201ENST00000390905 107 ntBASIC2.28□□□□□ -2.04
AP4E1Q9UPM8 RNU6-1086P-201ENST00000410930 100 ntBASIC2.28□□□□□ -2.04
AP4E1Q9UPM8 MIR4529-201ENST00000578110 78 ntBASIC2.28□□□□□ -2.04
AP4E1Q9UPM8 AC103810.7-201ENST00000607821 91 ntBASIC2.28□□□□□ -2.04
AP4E1Q9UPM8 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
AP4E1Q9UPM8 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.28□□□□□ -2.05
AP4E1Q9UPM8 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 175.9 ms