Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 RNA5SP261-201ENST00000410536 106 ntBASIC0.45□□□□□ -2.34
DDX28Q9NUL7 MIR8087-201ENST00000612745 78 ntBASIC0.45□□□□□ -2.34
DDX28Q9NUL7 MIR302B-201ENST00000362188 73 ntBASIC0.44□□□□□ -2.34
DDX28Q9NUL7 Y_RNA.30-201ENST00000362572 97 ntBASIC0.44□□□□□ -2.34
DDX28Q9NUL7 Y_RNA.85-201ENST00000363014 111 ntBASIC0.44□□□□□ -2.34
DDX28Q9NUL7 RNU6-238P-201ENST00000363313 106 ntBASIC0.44□□□□□ -2.34
DDX28Q9NUL7 Y_RNA.351-201ENST00000365436 96 ntBASIC0.44□□□□□ -2.34
DDX28Q9NUL7 RNY1P8-201ENST00000383970 114 ntBASIC0.44□□□□□ -2.34
DDX28Q9NUL7 SNORA1-201ENST00000384107 130 ntBASIC0.44□□□□□ -2.34
DDX28Q9NUL7 MIR563-201ENST00000385080 79 ntBASIC0.44□□□□□ -2.34
DDX28Q9NUL7 RNU6-1319P-201ENST00000390855 104 ntBASIC0.44□□□□□ -2.34
DDX28Q9NUL7 RNU6-747P-201ENST00000390928 104 ntBASIC0.44□□□□□ -2.34
DDX28Q9NUL7 RNU6-241P-201ENST00000391148 104 ntBASIC0.44□□□□□ -2.34
DDX28Q9NUL7 RNU6-381P-201ENST00000391259 108 ntBASIC0.44□□□□□ -2.34
DDX28Q9NUL7 RNU6-447P-201ENST00000410293 104 ntBASIC0.44□□□□□ -2.34
DDX28Q9NUL7 RNU6-1118P-201ENST00000410382 104 ntBASIC0.44□□□□□ -2.34
DDX28Q9NUL7 RNU6-1076P-201ENST00000410397 104 ntBASIC0.44□□□□□ -2.34
DDX28Q9NUL7 RNU6-355P-201ENST00000410427 104 ntBASIC0.44□□□□□ -2.34
DDX28Q9NUL7 RNU6-791P-201ENST00000410467 104 ntBASIC0.44□□□□□ -2.34
DDX28Q9NUL7 RNU6-705P-201ENST00000410601 104 ntBASIC0.44□□□□□ -2.34
DDX28Q9NUL7 RNU6-1100P-201ENST00000410691 104 ntBASIC0.44□□□□□ -2.34
DDX28Q9NUL7 RNU6-1190P-201ENST00000410811 104 ntBASIC0.44□□□□□ -2.34
DDX28Q9NUL7 RNU6-860P-201ENST00000410860 104 ntBASIC0.44□□□□□ -2.34
DDX28Q9NUL7 RNU6-1217P-201ENST00000411276 104 ntBASIC0.44□□□□□ -2.34
DDX28Q9NUL7 RNU6-785P-201ENST00000411324 104 ntBASIC0.44□□□□□ -2.34
DDX28Q9NUL7 AC114737.2-201ENST00000421583 173 ntBASIC0.44□□□□□ -2.34
DDX28Q9NUL7 AC098934.3-201ENST00000430450 190 ntBASIC0.44□□□□□ -2.34
DDX28Q9NUL7 RNU7-185P-201ENST00000459215 60 ntBASIC0.44□□□□□ -2.34
DDX28Q9NUL7 Y_RNA.720-201ENST00000517166 92 ntBASIC0.44□□□□□ -2.34
DDX28Q9NUL7 AC006504.6-201ENST00000590142 199 ntBASIC0.44□□□□□ -2.34
DDX28Q9NUL7 U6.90-201ENST00000614007 104 ntBASIC0.44□□□□□ -2.34
DDX28Q9NUL7 U6.70-201ENST00000620287 104 ntBASIC0.44□□□□□ -2.34
DDX28Q9NUL7 MIR342-201ENST00000362212 99 ntBASIC0.43□□□□□ -2.34
DDX28Q9NUL7 Y_RNA.23-201ENST00000362496 106 ntBASIC0.43□□□□□ -2.34
DDX28Q9NUL7 RNU6-716P-201ENST00000365621 103 ntBASIC0.43□□□□□ -2.34
DDX28Q9NUL7 Y_RNA.416-201ENST00000384014 113 ntBASIC0.43□□□□□ -2.34
DDX28Q9NUL7 RNU6-364P-201ENST00000384387 107 ntBASIC0.43□□□□□ -2.34
DDX28Q9NUL7 Y_RNA.518-201ENST00000384552 113 ntBASIC0.43□□□□□ -2.34
DDX28Q9NUL7 Y_RNA.542-201ENST00000384641 111 ntBASIC0.43□□□□□ -2.34
DDX28Q9NUL7 SNORD12C-201ENST00000386307 89 ntBASIC0.43□□□□□ -2.34
DDX28Q9NUL7 MT-TW-201ENST00000387382 68 ntBASIC0.43□□□□□ -2.34
DDX28Q9NUL7 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.43□□□□□ -2.34
DDX28Q9NUL7 SNORA79-201ENST00000408376 140 ntBASIC0.43□□□□□ -2.34
DDX28Q9NUL7 Y_RNA.618-201ENST00000410949 107 ntBASIC0.43□□□□□ -2.34
DDX28Q9NUL7 RNU7-80P-201ENST00000459562 61 ntBASIC0.43□□□□□ -2.34
DDX28Q9NUL7 MTATP8P1-201ENST00000467115 207 ntBASIC0.43□□□□□ -2.34
DDX28Q9NUL7 RNA5SP330-201ENST00000517096 96 ntBASIC0.43□□□□□ -2.34
DDX28Q9NUL7 AP003072.1-201ENST00000531740 145 ntBASIC0.43□□□□□ -2.34
DDX28Q9NUL7 AL442663.2-201ENST00000554385 511 ntBASIC0.43□□□□□ -2.34
DDX28Q9NUL7 AC243829.6-201ENST00000612652 106 ntBASIC0.43□□□□□ -2.34
DDX28Q9NUL7 MIR6717-201ENST00000622747 73 ntBASIC0.43□□□□□ -2.34
DDX28Q9NUL7 RNU6-728P-201ENST00000365375 104 ntBASIC0.42□□□□□ -2.34
DDX28Q9NUL7 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.42□□□□□ -2.34
DDX28Q9NUL7 Y_RNA.461-201ENST00000384263 103 ntBASIC0.42□□□□□ -2.34
DDX28Q9NUL7 Y_RNA.483-201ENST00000384380 101 ntBASIC0.42□□□□□ -2.34
DDX28Q9NUL7 MT-TF-201ENST00000387314 71 ntBASIC0.42□□□□□ -2.34
DDX28Q9NUL7 MIR1257-201ENST00000408490 117 ntBASIC0.42□□□□□ -2.34
DDX28Q9NUL7 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC0.42□□□□□ -2.34
DDX28Q9NUL7 AC090897.1-201ENST00000580909 226 ntBASIC0.42□□□□□ -2.34
DDX28Q9NUL7 AL162730.1-201ENST00000605734 292 ntBASIC0.42□□□□□ -2.34
DDX28Q9NUL7 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.42□□□□□ -2.34
DDX28Q9NUL7 MIR330-201ENST00000362196 94 ntBASIC0.41□□□□□ -2.34
DDX28Q9NUL7 MIR30D-201ENST00000362283 70 ntBASIC0.41□□□□□ -2.34
DDX28Q9NUL7 RNU6-653P-201ENST00000363074 106 ntBASIC0.41□□□□□ -2.34
DDX28Q9NUL7 RNU6-103P-201ENST00000363686 107 ntBASIC0.41□□□□□ -2.34
DDX28Q9NUL7 Y_RNA.262-201ENST00000364641 102 ntBASIC0.41□□□□□ -2.34
DDX28Q9NUL7 RNU6-1292P-201ENST00000383856 107 ntBASIC0.41□□□□□ -2.34
DDX28Q9NUL7 Y_RNA.454-201ENST00000384224 113 ntBASIC0.41□□□□□ -2.34
DDX28Q9NUL7 RNU6-1160P-201ENST00000384546 104 ntBASIC0.41□□□□□ -2.34
DDX28Q9NUL7 Y_RNA.574-201ENST00000384766 95 ntBASIC0.41□□□□□ -2.34
DDX28Q9NUL7 SNORA26.6-201ENST00000391256 115 ntBASIC0.41□□□□□ -2.34
DDX28Q9NUL7 SNORD100-201ENST00000408573 76 ntBASIC0.41□□□□□ -2.34
DDX28Q9NUL7 AL358176.2-201ENST00000425769 204 ntBASIC0.41□□□□□ -2.34
DDX28Q9NUL7 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.41□□□□□ -2.34
DDX28Q9NUL7 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.41□□□□□ -2.34
DDX28Q9NUL7 RNU7-156P-201ENST00000517214 74 ntBASIC0.41□□□□□ -2.34
DDX28Q9NUL7 SNORD92-201ENST00000585078 85 ntBASIC0.41□□□□□ -2.34
DDX28Q9NUL7 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.41□□□□□ -2.34
DDX28Q9NUL7 Y_RNA.176-201ENST00000363815 109 ntBASIC0.4□□□□□ -2.35
DDX28Q9NUL7 Y_RNA.251-201ENST00000364551 99 ntBASIC0.4□□□□□ -2.35
DDX28Q9NUL7 Y_RNA.352-201ENST00000365439 102 ntBASIC0.4□□□□□ -2.35
DDX28Q9NUL7 RNU4-17P-201ENST00000365598 141 ntBASIC0.4□□□□□ -2.35
DDX28Q9NUL7 SNORA50A-201ENST00000384225 134 ntBASIC0.4□□□□□ -2.35
DDX28Q9NUL7 RNU4-43P-201ENST00000410628 137 ntBASIC0.4□□□□□ -2.35
DDX28Q9NUL7 RNA5SP127-201ENST00000411051 133 ntBASIC0.4□□□□□ -2.35
DDX28Q9NUL7 RNU7-102P-201ENST00000458948 62 ntBASIC0.4□□□□□ -2.35
DDX28Q9NUL7 RNU6-561P-201ENST00000516222 102 ntBASIC0.4□□□□□ -2.35
DDX28Q9NUL7 SNORA62.5-201ENST00000516634 120 ntBASIC0.4□□□□□ -2.35
DDX28Q9NUL7 MIR3152-201ENST00000579801 74 ntBASIC0.4□□□□□ -2.35
DDX28Q9NUL7 MIR3129-201ENST00000581095 76 ntBASIC0.4□□□□□ -2.35
DDX28Q9NUL7 MIR5197-201ENST00000583721 112 ntBASIC0.4□□□□□ -2.35
DDX28Q9NUL7 AL109933.3-201ENST00000619095 188 ntBASIC0.4□□□□□ -2.35
DDX28Q9NUL7 Y_RNA.326-201ENST00000365176 113 ntBASIC0.39□□□□□ -2.35
DDX28Q9NUL7 VTRNA1-3-201ENST00000365645 89 ntBASIC0.39□□□□□ -2.35
DDX28Q9NUL7 AC008608.1-201ENST00000603910 127 ntBASIC0.39□□□□□ -2.35
DDX28Q9NUL7 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.39□□□□□ -2.35
DDX28Q9NUL7 MIR376A2-201ENST00000636782 80 ntBASIC0.39□□□□□ -2.35
DDX28Q9NUL7 Y_RNA.258-201ENST00000364613 105 ntBASIC0.38□□□□□ -2.35
DDX28Q9NUL7 Y_RNA.430-201ENST00000384081 110 ntBASIC0.38□□□□□ -2.35
DDX28Q9NUL7 RNU6-472P-201ENST00000384299 107 ntBASIC0.38□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 179 ms