Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 AL137067.1-201ENST00000615933 120 ntBASIC1.27□□□□□ -2.21
MMP28Q9H239 AC008133.2-201ENST00000624540 351 ntBASIC1.27□□□□□ -2.21
MMP28Q9H239 RNY1P10-201ENST00000363268 113 ntBASIC1.26□□□□□ -2.21
MMP28Q9H239 MIR517C-201ENST00000385103 95 ntBASIC1.26□□□□□ -2.21
MMP28Q9H239 MIR1263-201ENST00000408324 86 ntBASIC1.26□□□□□ -2.21
MMP28Q9H239 RNU6-1190P-201ENST00000410811 104 ntBASIC1.26□□□□□ -2.21
MMP28Q9H239 SNORD111.1-201ENST00000516421 86 ntBASIC1.26□□□□□ -2.21
MMP28Q9H239 RNU6-113P-201ENST00000516653 101 ntBASIC1.26□□□□□ -2.21
MMP28Q9H239 Y_RNA.712-201ENST00000517011 92 ntBASIC1.26□□□□□ -2.21
MMP28Q9H239 AL645939.4-201ENST00000604495 135 ntBASIC1.26□□□□□ -2.21
MMP28Q9H239 SNORD1A-201ENST00000364968 72 ntBASIC1.25□□□□□ -2.21
MMP28Q9H239 SNORA70.7-201ENST00000384159 133 ntBASIC1.25□□□□□ -2.21
MMP28Q9H239 SNORA51.10-201ENST00000384418 136 ntBASIC1.25□□□□□ -2.21
MMP28Q9H239 Y_RNA.537-201ENST00000384626 109 ntBASIC1.25□□□□□ -2.21
MMP28Q9H239 RNU1-78P-201ENST00000391248 165 ntBASIC1.25□□□□□ -2.21
MMP28Q9H239 RNU6-735P-201ENST00000410612 107 ntBASIC1.25□□□□□ -2.21
MMP28Q9H239 RN7SKP179-201ENST00000516126 217 ntBASIC1.25□□□□□ -2.21
MMP28Q9H239 AL359881.1-201ENST00000602916 267 ntBASIC1.25□□□□□ -2.21
MMP28Q9H239 AL096861.1-201ENST00000610899 123 ntBASIC1.25□□□□□ -2.21
MMP28Q9H239 MIR8070-201ENST00000616510 88 ntBASIC1.25□□□□□ -2.21
MMP28Q9H239 MIR3914-2-201ENST00000637339 95 ntBASIC1.25□□□□□ -2.21
MMP28Q9H239 MIRLET7F2-201ENST00000385277 83 ntBASIC1.24□□□□□ -2.21
MMP28Q9H239 SNORA67.6-201ENST00000391093 99 ntBASIC1.24□□□□□ -2.21
MMP28Q9H239 HMGN1P33-201ENST00000432945 451 ntBASIC1.24□□□□□ -2.21
MMP28Q9H239 AC245517.4-201ENST00000448601 281 ntBASIC1.24□□□□□ -2.21
MMP28Q9H239 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.24□□□□□ -2.21
MMP28Q9H239 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.24□□□□□ -2.21
MMP28Q9H239 RNU7-53P-201ENST00000516705 60 ntBASIC1.24□□□□□ -2.21
MMP28Q9H239 MIR3192-201ENST00000584920 77 ntBASIC1.24□□□□□ -2.21
MMP28Q9H239 AL513534.2-201ENST00000603836 250 ntBASIC1.24□□□□□ -2.21
MMP28Q9H239 AC021443.1-201ENST00000604478 211 ntBASIC1.24□□□□□ -2.21
MMP28Q9H239 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.24□□□□□ -2.21
MMP28Q9H239 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.23□□□□□ -2.21
MMP28Q9H239 RNU6-60P-201ENST00000364792 103 ntBASIC1.23□□□□□ -2.21
MMP28Q9H239 RNU6-1067P-201ENST00000384752 107 ntBASIC1.23□□□□□ -2.21
MMP28Q9H239 AC009474.2-201ENST00000451383 136 ntBASIC1.23□□□□□ -2.21
MMP28Q9H239 AC079140.2-201ENST00000506193 142 ntBASIC1.23□□□□□ -2.21
MMP28Q9H239 SNORD33.1-201ENST00000516213 88 ntBASIC1.23□□□□□ -2.21
MMP28Q9H239 RNU6-947P-201ENST00000516264 106 ntBASIC1.23□□□□□ -2.21
MMP28Q9H239 RNU2-35P-201ENST00000516446 142 ntBASIC1.23□□□□□ -2.21
MMP28Q9H239 RNY4P20-201ENST00000516678 93 ntBASIC1.23□□□□□ -2.21
MMP28Q9H239 SNORA31.24-201ENST00000517232 57 ntBASIC1.23□□□□□ -2.21
MMP28Q9H239 MIR548AO-201ENST00000579992 96 ntBASIC1.23□□□□□ -2.21
MMP28Q9H239 AL020996.3-201ENST00000606617 222 ntBASIC1.23□□□□□ -2.21
MMP28Q9H239 AC025166.1-201ENST00000612411 163 ntBASIC1.23□□□□□ -2.21
MMP28Q9H239 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.23□□□□□ -2.21
MMP28Q9H239 AC021613.1-201ENST00000623880 111 ntBASIC1.23□□□□□ -2.21
MMP28Q9H239 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
MMP28Q9H239 Y_RNA.528-201ENST00000384575 108 ntBASIC1.22□□□□□ -2.21
MMP28Q9H239 SNORA26.6-201ENST00000391256 115 ntBASIC1.22□□□□□ -2.21
MMP28Q9H239 MIR1323-201ENST00000408090 73 ntBASIC1.22□□□□□ -2.21
MMP28Q9H239 RNU7-73P-201ENST00000458743 63 ntBASIC1.22□□□□□ -2.21
MMP28Q9H239 snoU13.25-201ENST00000458945 104 ntBASIC1.22□□□□□ -2.21
MMP28Q9H239 RNU7-164P-201ENST00000459221 62 ntBASIC1.22□□□□□ -2.21
MMP28Q9H239 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.22□□□□□ -2.21
MMP28Q9H239 RNA5SP445-201ENST00000515889 115 ntBASIC1.22□□□□□ -2.21
MMP28Q9H239 RNU7-123P-201ENST00000515911 60 ntBASIC1.22□□□□□ -2.21
MMP28Q9H239 RNU1-92P-201ENST00000517017 135 ntBASIC1.22□□□□□ -2.21
MMP28Q9H239 AC068338.1-201ENST00000565567 176 ntBASIC1.22□□□□□ -2.21
MMP28Q9H239 MIR3937-201ENST00000580135 106 ntBASIC1.22□□□□□ -2.21
MMP28Q9H239 MIR4305-201ENST00000583252 102 ntBASIC1.22□□□□□ -2.21
MMP28Q9H239 GHRLOS.1-201ENST00000610995 70 ntBASIC1.22□□□□□ -2.21
MMP28Q9H239 MIR4251-201ENST00000635819 61 ntBASIC1.22□□□□□ -2.21
MMP28Q9H239 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.22□□□□□ -2.21
MMP28Q9H239 Y_RNA.298-201ENST00000364960 107 ntBASIC1.21□□□□□ -2.22
MMP28Q9H239 SNORA25.9-201ENST00000365087 128 ntBASIC1.21□□□□□ -2.22
MMP28Q9H239 Y_RNA.353-201ENST00000365440 108 ntBASIC1.21□□□□□ -2.22
MMP28Q9H239 SNORD26-201ENST00000384147 75 ntBASIC1.21□□□□□ -2.22
MMP28Q9H239 Y_RNA.563-201ENST00000384707 108 ntBASIC1.21□□□□□ -2.22
MMP28Q9H239 MIR499A-201ENST00000384903 122 ntBASIC1.21□□□□□ -2.22
MMP28Q9H239 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.21□□□□□ -2.22
MMP28Q9H239 RNA5SP144-201ENST00000410846 116 ntBASIC1.21□□□□□ -2.22
MMP28Q9H239 POLR2J4-204ENST00000418424 324 ntBASIC1.21□□□□□ -2.22
MMP28Q9H239 AC027119.1-201ENST00000440877 241 ntBASIC1.21□□□□□ -2.22
MMP28Q9H239 AC022523.2-201ENST00000561045 150 ntBASIC1.21□□□□□ -2.22
MMP28Q9H239 MTND5P18-201ENST00000445624 1801 ntBASIC1.21□□□□□ -2.22
MMP28Q9H239 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.2□□□□□ -2.22
MMP28Q9H239 SNORA25.3-201ENST00000363205 127 ntBASIC1.2□□□□□ -2.22
MMP28Q9H239 Y_RNA.171-201ENST00000363760 102 ntBASIC1.2□□□□□ -2.22
MMP28Q9H239 Y_RNA.327-201ENST00000365201 102 ntBASIC1.2□□□□□ -2.22
MMP28Q9H239 MIR150-201ENST00000385048 84 ntBASIC1.2□□□□□ -2.22
MMP28Q9H239 MIR758-201ENST00000390227 88 ntBASIC1.2□□□□□ -2.22
MMP28Q9H239 RNU6-1319P-201ENST00000390855 104 ntBASIC1.2□□□□□ -2.22
MMP28Q9H239 RNU6-747P-201ENST00000390928 104 ntBASIC1.2□□□□□ -2.22
MMP28Q9H239 RNU6-241P-201ENST00000391148 104 ntBASIC1.2□□□□□ -2.22
MMP28Q9H239 RNU6-177P-201ENST00000411257 104 ntBASIC1.2□□□□□ -2.22
MMP28Q9H239 AC090844.1-201ENST00000422019 156 ntBASIC1.2□□□□□ -2.22
MMP28Q9H239 RPS27P16-201ENST00000425758 201 ntBASIC1.2□□□□□ -2.22
MMP28Q9H239 AL354695.1-201ENST00000427935 228 ntBASIC1.2□□□□□ -2.22
MMP28Q9H239 snoU13.16-201ENST00000459350 104 ntBASIC1.2□□□□□ -2.22
MMP28Q9H239 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.2□□□□□ -2.22
MMP28Q9H239 RNU6-1258P-201ENST00000516911 111 ntBASIC1.2□□□□□ -2.22
MMP28Q9H239 RNU6-902P-201ENST00000517212 91 ntBASIC1.2□□□□□ -2.22
MMP28Q9H239 MTND5P34-201ENST00000568888 325 ntBASIC1.2□□□□□ -2.22
MMP28Q9H239 AL357312.1-201ENST00000603879 298 ntBASIC1.2□□□□□ -2.22
MMP28Q9H239 MIR8055-201ENST00000610739 97 ntBASIC1.2□□□□□ -2.22
MMP28Q9H239 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.2□□□□□ -2.22
MMP28Q9H239 MIR6717-201ENST00000622747 73 ntBASIC1.2□□□□□ -2.22
MMP28Q9H239 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
MMP28Q9H239 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 117.9 ms