Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 snoU2_19.4-201ENST00000364329 80 ntBASIC0.48□□□□□ -2.33
CHMP4AQ9BY43 Y_RNA.512-201ENST00000384518 102 ntBASIC0.48□□□□□ -2.33
CHMP4AQ9BY43 MIR193B-201ENST00000384907 83 ntBASIC0.48□□□□□ -2.33
CHMP4AQ9BY43 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.48□□□□□ -2.33
CHMP4AQ9BY43 AC092634.7-201ENST00000621022 103 ntBASIC0.48□□□□□ -2.33
CHMP4AQ9BY43 Y_RNA.351-201ENST00000365436 96 ntBASIC0.47□□□□□ -2.33
CHMP4AQ9BY43 SNORA1-201ENST00000384107 130 ntBASIC0.47□□□□□ -2.33
CHMP4AQ9BY43 MIR7-2-201ENST00000384970 110 ntBASIC0.47□□□□□ -2.33
CHMP4AQ9BY43 RNU6-1109P-201ENST00000391187 107 ntBASIC0.47□□□□□ -2.33
CHMP4AQ9BY43 RNU7-45P-201ENST00000459460 63 ntBASIC0.47□□□□□ -2.33
CHMP4AQ9BY43 RNU6-863P-201ENST00000515989 104 ntBASIC0.47□□□□□ -2.33
CHMP4AQ9BY43 U2.14-201ENST00000615943 113 ntBASIC0.47□□□□□ -2.33
CHMP4AQ9BY43 MIR616-201ENST00000385293 97 ntBASIC0.46□□□□□ -2.34
CHMP4AQ9BY43 Y_RNA.604-201ENST00000410574 102 ntBASIC0.46□□□□□ -2.34
CHMP4AQ9BY43 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.46□□□□□ -2.34
CHMP4AQ9BY43 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC0.46□□□□□ -2.34
CHMP4AQ9BY43 RNU6-238P-201ENST00000363313 106 ntBASIC0.45□□□□□ -2.34
CHMP4AQ9BY43 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.45□□□□□ -2.34
CHMP4AQ9BY43 RPL39P25-201ENST00000449384 154 ntBASIC0.45□□□□□ -2.34
CHMP4AQ9BY43 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.45□□□□□ -2.34
CHMP4AQ9BY43 SNORD2.1-201ENST00000458762 69 ntBASIC0.45□□□□□ -2.34
CHMP4AQ9BY43 RNU6-635P-201ENST00000516651 102 ntBASIC0.45□□□□□ -2.34
CHMP4AQ9BY43 RNU6-1153P-201ENST00000516760 105 ntBASIC0.45□□□□□ -2.34
CHMP4AQ9BY43 MIR1273G-201ENST00000577677 100 ntBASIC0.45□□□□□ -2.34
CHMP4AQ9BY43 AC090897.1-201ENST00000580909 226 ntBASIC0.45□□□□□ -2.34
CHMP4AQ9BY43 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.44□□□□□ -2.34
CHMP4AQ9BY43 Y_RNA.23-201ENST00000362496 106 ntBASIC0.44□□□□□ -2.34
CHMP4AQ9BY43 MTCYBP6-201ENST00000441810 138 ntBASIC0.44□□□□□ -2.34
CHMP4AQ9BY43 SNORA25.12-201ENST00000516202 82 ntBASIC0.44□□□□□ -2.34
CHMP4AQ9BY43 MIR3129-201ENST00000581095 76 ntBASIC0.44□□□□□ -2.34
CHMP4AQ9BY43 MIR6717-201ENST00000622747 73 ntBASIC0.44□□□□□ -2.34
CHMP4AQ9BY43 Y_RNA.82-201ENST00000363000 102 ntBASIC0.43□□□□□ -2.34
CHMP4AQ9BY43 Y_RNA.92-201ENST00000363043 102 ntBASIC0.43□□□□□ -2.34
CHMP4AQ9BY43 RNU6-1099P-201ENST00000363533 107 ntBASIC0.43□□□□□ -2.34
CHMP4AQ9BY43 Y_RNA.235-201ENST00000364412 102 ntBASIC0.43□□□□□ -2.34
CHMP4AQ9BY43 Y_RNA.306-201ENST00000365015 102 ntBASIC0.43□□□□□ -2.34
CHMP4AQ9BY43 Y_RNA.312-201ENST00000365089 102 ntBASIC0.43□□□□□ -2.34
CHMP4AQ9BY43 Y_RNA.322-201ENST00000365151 102 ntBASIC0.43□□□□□ -2.34
CHMP4AQ9BY43 MIR563-201ENST00000385080 79 ntBASIC0.43□□□□□ -2.34
CHMP4AQ9BY43 MT-TF-201ENST00000387314 71 ntBASIC0.43□□□□□ -2.34
CHMP4AQ9BY43 SNORA79-201ENST00000408376 140 ntBASIC0.43□□□□□ -2.34
CHMP4AQ9BY43 Y_RNA.650-201ENST00000459002 102 ntBASIC0.43□□□□□ -2.34
CHMP4AQ9BY43 MTATP8P1-201ENST00000467115 207 ntBASIC0.43□□□□□ -2.34
CHMP4AQ9BY43 AC002350.1-201ENST00000490759 375 ntBASIC0.43□□□□□ -2.34
CHMP4AQ9BY43 Y_RNA.777-201ENST00000516982 102 ntBASIC0.43□□□□□ -2.34
CHMP4AQ9BY43 AL442663.2-201ENST00000554385 511 ntBASIC0.43□□□□□ -2.34
CHMP4AQ9BY43 Y_RNA.771-201ENST00000598668 102 ntBASIC0.43□□□□□ -2.34
CHMP4AQ9BY43 AC097639.2-201ENST00000603159 172 ntBASIC0.43□□□□□ -2.34
CHMP4AQ9BY43 AL365265.1-201ENST00000621045 234 ntBASIC0.43□□□□□ -2.34
CHMP4AQ9BY43 Y_RNA.789-201ENST00000622480 102 ntBASIC0.43□□□□□ -2.34
CHMP4AQ9BY43 MIR30D-201ENST00000362283 70 ntBASIC0.42□□□□□ -2.34
CHMP4AQ9BY43 RNA5SP117-201ENST00000365294 118 ntBASIC0.42□□□□□ -2.34
CHMP4AQ9BY43 SNORD100-201ENST00000408573 76 ntBASIC0.42□□□□□ -2.34
CHMP4AQ9BY43 RNA5SP237-201ENST00000410414 113 ntBASIC0.42□□□□□ -2.34
CHMP4AQ9BY43 RNA5SP261-201ENST00000410536 106 ntBASIC0.42□□□□□ -2.34
CHMP4AQ9BY43 SNORD92-201ENST00000585078 85 ntBASIC0.42□□□□□ -2.34
CHMP4AQ9BY43 MIR376A2-201ENST00000636782 80 ntBASIC0.42□□□□□ -2.34
CHMP4AQ9BY43 U6.104-201ENST00000637979 90 ntBASIC0.42□□□□□ -2.34
CHMP4AQ9BY43 AL596211.1-201ENST00000569873 2277 ntBASIC0.41□□□□□ -2.34
CHMP4AQ9BY43 Y_RNA.205-201ENST00000364128 113 ntBASIC0.41□□□□□ -2.34
CHMP4AQ9BY43 Y_RNA.416-201ENST00000384014 113 ntBASIC0.41□□□□□ -2.34
CHMP4AQ9BY43 MIR1302-6-201ENST00000408466 90 ntBASIC0.41□□□□□ -2.34
CHMP4AQ9BY43 SNORD93-201ENST00000408813 74 ntBASIC0.41□□□□□ -2.34
CHMP4AQ9BY43 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.41□□□□□ -2.34
CHMP4AQ9BY43 RNU7-80P-201ENST00000459562 61 ntBASIC0.41□□□□□ -2.34
CHMP4AQ9BY43 RNU6-561P-201ENST00000516222 102 ntBASIC0.41□□□□□ -2.34
CHMP4AQ9BY43 MIR924-201ENST00000638017 53 ntBASIC0.41□□□□□ -2.34
CHMP4AQ9BY43 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.4□□□□□ -2.35
CHMP4AQ9BY43 SNORA40.8-201ENST00000411034 126 ntBASIC0.4□□□□□ -2.35
CHMP4AQ9BY43 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.4□□□□□ -2.35
CHMP4AQ9BY43 RNA5SP517-201ENST00000364724 117 ntBASIC0.39□□□□□ -2.35
CHMP4AQ9BY43 RNU6-728P-201ENST00000365375 104 ntBASIC0.39□□□□□ -2.35
CHMP4AQ9BY43 Y_RNA.461-201ENST00000384263 103 ntBASIC0.39□□□□□ -2.35
CHMP4AQ9BY43 Y_RNA.483-201ENST00000384380 101 ntBASIC0.39□□□□□ -2.35
CHMP4AQ9BY43 SNORA26.6-201ENST00000391256 115 ntBASIC0.39□□□□□ -2.35
CHMP4AQ9BY43 RNU6-381P-201ENST00000391259 108 ntBASIC0.39□□□□□ -2.35
CHMP4AQ9BY43 SEPT7P4-201ENST00000437076 306 ntBASIC0.39□□□□□ -2.35
CHMP4AQ9BY43 RNA5SP94-201ENST00000516917 108 ntBASIC0.39□□□□□ -2.35
CHMP4AQ9BY43 RNU6-448P-201ENST00000517052 107 ntBASIC0.39□□□□□ -2.35
CHMP4AQ9BY43 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC0.39□□□□□ -2.35
CHMP4AQ9BY43 MIR5197-201ENST00000583721 112 ntBASIC0.39□□□□□ -2.35
CHMP4AQ9BY43 MIR335-201ENST00000362173 94 ntBASIC0.38□□□□□ -2.35
CHMP4AQ9BY43 RNU6-653P-201ENST00000363074 106 ntBASIC0.38□□□□□ -2.35
CHMP4AQ9BY43 Y_RNA.176-201ENST00000363815 109 ntBASIC0.38□□□□□ -2.35
CHMP4AQ9BY43 RNU4-17P-201ENST00000365598 141 ntBASIC0.38□□□□□ -2.35
CHMP4AQ9BY43 RNU6-1227P-201ENST00000383981 107 ntBASIC0.38□□□□□ -2.35
CHMP4AQ9BY43 Y_RNA.454-201ENST00000384224 113 ntBASIC0.38□□□□□ -2.35
CHMP4AQ9BY43 Y_RNA.542-201ENST00000384641 111 ntBASIC0.38□□□□□ -2.35
CHMP4AQ9BY43 RNU4-83P-201ENST00000410863 133 ntBASIC0.38□□□□□ -2.35
CHMP4AQ9BY43 MIR6779-201ENST00000617283 64 ntBASIC0.38□□□□□ -2.35
CHMP4AQ9BY43 AC091932.4-201ENST00000623386 200 ntBASIC0.38□□□□□ -2.35
CHMP4AQ9BY43 RNU6-597P-201ENST00000365620 102 ntBASIC0.37□□□□□ -2.35
CHMP4AQ9BY43 Y_RNA.618-201ENST00000410949 107 ntBASIC0.37□□□□□ -2.35
CHMP4AQ9BY43 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.37□□□□□ -2.35
CHMP4AQ9BY43 RNU7-70P-201ENST00000516941 66 ntBASIC0.37□□□□□ -2.35
CHMP4AQ9BY43 MIR3678-201ENST00000578455 94 ntBASIC0.37□□□□□ -2.35
CHMP4AQ9BY43 MIR3152-201ENST00000579801 74 ntBASIC0.37□□□□□ -2.35
CHMP4AQ9BY43 MIR8062-201ENST00000621515 85 ntBASIC0.37□□□□□ -2.35
CHMP4AQ9BY43 Y_RNA.54-201ENST00000362766 105 ntBASIC0.36□□□□□ -2.35
CHMP4AQ9BY43 SNORA20-201ENST00000384662 132 ntBASIC0.36□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms