Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 RNU6-1067P-201ENST00000384752 107 ntBASIC0.96□□□□□ -2.26
USP28Q96RU2 SNORD37.2-201ENST00000391075 66 ntBASIC0.96□□□□□ -2.26
USP28Q96RU2 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.96□□□□□ -2.26
USP28Q96RU2 POLR2J4-204ENST00000418424 324 ntBASIC0.96□□□□□ -2.26
USP28Q96RU2 RNU7-73P-201ENST00000458743 63 ntBASIC0.96□□□□□ -2.26
USP28Q96RU2 snoU13.16-201ENST00000459350 104 ntBASIC0.96□□□□□ -2.26
USP28Q96RU2 RNA5SP236-201ENST00000516169 116 ntBASIC0.96□□□□□ -2.26
USP28Q96RU2 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.96□□□□□ -2.26
USP28Q96RU2 MIR4498-201ENST00000577599 66 ntBASIC0.96□□□□□ -2.26
USP28Q96RU2 AL020996.3-201ENST00000606617 222 ntBASIC0.96□□□□□ -2.26
USP28Q96RU2 MIR8055-201ENST00000610739 97 ntBASIC0.96□□□□□ -2.26
USP28Q96RU2 MIR6767-201ENST00000637302 66 ntBASIC0.96□□□□□ -2.26
USP28Q96RU2 Y_RNA.170-201ENST00000363746 110 ntBASIC0.95□□□□□ -2.26
USP28Q96RU2 SNORD114-2-201ENST00000363953 78 ntBASIC0.95□□□□□ -2.26
USP28Q96RU2 Y_RNA.251-201ENST00000364551 99 ntBASIC0.95□□□□□ -2.26
USP28Q96RU2 RNU4-16P-201ENST00000364737 141 ntBASIC0.95□□□□□ -2.26
USP28Q96RU2 RNU6-209P-201ENST00000384118 107 ntBASIC0.95□□□□□ -2.26
USP28Q96RU2 SNORA26.6-201ENST00000391256 115 ntBASIC0.95□□□□□ -2.26
USP28Q96RU2 RNU7-197P-201ENST00000458836 62 ntBASIC0.95□□□□□ -2.26
USP28Q96RU2 RNU7-21P-201ENST00000459430 62 ntBASIC0.95□□□□□ -2.26
USP28Q96RU2 RNA5SP272-201ENST00000516095 111 ntBASIC0.95□□□□□ -2.26
USP28Q96RU2 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.95□□□□□ -2.26
USP28Q96RU2 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC0.95□□□□□ -2.26
USP28Q96RU2 AC023827.1-201ENST00000569247 97 ntBASIC0.95□□□□□ -2.26
USP28Q96RU2 Y_RNA.778-201ENST00000620203 90 ntBASIC0.95□□□□□ -2.26
USP28Q96RU2 AC008163.1-202ENST00000636004 2889 ntBASIC0.95□□□□□ -2.26
USP28Q96RU2 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.94□□□□□ -2.26
USP28Q96RU2 RNU6-449P-201ENST00000383914 107 ntBASIC0.94□□□□□ -2.26
USP28Q96RU2 Y_RNA.580-201ENST00000391004 95 ntBASIC0.94□□□□□ -2.26
USP28Q96RU2 AC244023.1-201ENST00000426884 112 ntBASIC0.94□□□□□ -2.26
USP28Q96RU2 AC002429.1-201ENST00000437672 148 ntBASIC0.94□□□□□ -2.26
USP28Q96RU2 RPL39P28-201ENST00000465655 155 ntBASIC0.94□□□□□ -2.26
USP28Q96RU2 RNU6-351P-201ENST00000516097 100 ntBASIC0.94□□□□□ -2.26
USP28Q96RU2 Y_RNA.686-201ENST00000516548 134 ntBASIC0.94□□□□□ -2.26
USP28Q96RU2 AC112693.2-201ENST00000556538 232 ntBASIC0.94□□□□□ -2.26
USP28Q96RU2 MIR3646-201ENST00000578301 84 ntBASIC0.94□□□□□ -2.26
USP28Q96RU2 AC131055.1-201ENST00000584626 316 ntBASIC0.94□□□□□ -2.26
USP28Q96RU2 AC242498.1-201ENST00000604134 111 ntBASIC0.94□□□□□ -2.26
USP28Q96RU2 uc_338.6-201ENST00000613544 171 ntBASIC0.94□□□□□ -2.26
USP28Q96RU2 SEPT14P17-201ENST00000617978 177 ntBASIC0.94□□□□□ -2.26
USP28Q96RU2 MIR337-201ENST00000362281 93 ntBASIC0.93□□□□□ -2.26
USP28Q96RU2 SNORA80D-201ENST00000384488 135 ntBASIC0.93□□□□□ -2.26
USP28Q96RU2 SNORA20-201ENST00000384662 132 ntBASIC0.93□□□□□ -2.26
USP28Q96RU2 RNU6-205P-201ENST00000390858 107 ntBASIC0.93□□□□□ -2.26
USP28Q96RU2 RNU6-460P-201ENST00000391158 108 ntBASIC0.93□□□□□ -2.26
USP28Q96RU2 RNU6-602P-201ENST00000411155 105 ntBASIC0.93□□□□□ -2.26
USP28Q96RU2 SNORA25.12-201ENST00000516202 82 ntBASIC0.93□□□□□ -2.26
USP28Q96RU2 RNU7-53P-201ENST00000516705 60 ntBASIC0.93□□□□□ -2.26
USP28Q96RU2 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC0.92□□□□□ -2.26
USP28Q96RU2 MIR302B-201ENST00000362188 73 ntBASIC0.92□□□□□ -2.26
USP28Q96RU2 MIR373-201ENST00000362273 69 ntBASIC0.92□□□□□ -2.26
USP28Q96RU2 RNU1-133P-201ENST00000364867 167 ntBASIC0.92□□□□□ -2.26
USP28Q96RU2 AC063976.4-201ENST00000421971 163 ntBASIC0.92□□□□□ -2.26
USP28Q96RU2 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.92□□□□□ -2.26
USP28Q96RU2 snoU13.21-201ENST00000459368 105 ntBASIC0.92□□□□□ -2.26
USP28Q96RU2 TRMT112P2-201ENST00000512910 132 ntBASIC0.92□□□□□ -2.26
USP28Q96RU2 RNU6-346P-201ENST00000516288 111 ntBASIC0.92□□□□□ -2.26
USP28Q96RU2 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.92□□□□□ -2.26
USP28Q96RU2 Z97988.1-201ENST00000637697 135 ntBASIC0.92□□□□□ -2.26
USP28Q96RU2 Y_RNA.164-201ENST00000363709 102 ntBASIC0.91□□□□□ -2.26
USP28Q96RU2 RNU6-309P-201ENST00000364573 106 ntBASIC0.91□□□□□ -2.26
USP28Q96RU2 SNORA1.1-201ENST00000364671 133 ntBASIC0.91□□□□□ -2.26
USP28Q96RU2 Y_RNA.464-201ENST00000384282 110 ntBASIC0.91□□□□□ -2.26
USP28Q96RU2 RNU6-613P-201ENST00000410412 108 ntBASIC0.91□□□□□ -2.26
USP28Q96RU2 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.91□□□□□ -2.26
USP28Q96RU2 Y_RNA.651-201ENST00000459380 103 ntBASIC0.91□□□□□ -2.26
USP28Q96RU2 RNU7-80P-201ENST00000459562 61 ntBASIC0.91□□□□□ -2.26
USP28Q96RU2 SNORD124-201ENST00000459577 104 ntBASIC0.91□□□□□ -2.26
USP28Q96RU2 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC0.91□□□□□ -2.26
USP28Q96RU2 RNU6-1212P-201ENST00000517023 104 ntBASIC0.91□□□□□ -2.26
USP28Q96RU2 AC036111.3-201ENST00000526389 112 ntBASIC0.91□□□□□ -2.26
USP28Q96RU2 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.91□□□□□ -2.26
USP28Q96RU2 MIR4781-201ENST00000585250 76 ntBASIC0.91□□□□□ -2.26
USP28Q96RU2 RNU6-94P-201ENST00000607728 107 ntBASIC0.91□□□□□ -2.26
USP28Q96RU2 MIR6717-201ENST00000622747 73 ntBASIC0.91□□□□□ -2.26
USP28Q96RU2 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.9□□□□□ -2.26
USP28Q96RU2 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.9□□□□□ -2.27
USP28Q96RU2 RNU6-349P-201ENST00000362402 107 ntBASIC0.9□□□□□ -2.27
USP28Q96RU2 RNU6-396P-201ENST00000365369 105 ntBASIC0.9□□□□□ -2.27
USP28Q96RU2 Y_RNA.506-201ENST00000384494 102 ntBASIC0.9□□□□□ -2.27
USP28Q96RU2 SNORA2B-201ENST00000384583 137 ntBASIC0.9□□□□□ -2.27
USP28Q96RU2 MIR19B1-201ENST00000384829 87 ntBASIC0.9□□□□□ -2.27
USP28Q96RU2 SNORD12C-201ENST00000386307 89 ntBASIC0.9□□□□□ -2.27
USP28Q96RU2 Y_RNA.584-201ENST00000391090 114 ntBASIC0.9□□□□□ -2.27
USP28Q96RU2 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.9□□□□□ -2.27
USP28Q96RU2 RNU7-200P-201ENST00000516105 62 ntBASIC0.9□□□□□ -2.27
USP28Q96RU2 Y_RNA.676-201ENST00000516393 96 ntBASIC0.9□□□□□ -2.27
USP28Q96RU2 MIR2115-201ENST00000516657 100 ntBASIC0.9□□□□□ -2.27
USP28Q96RU2 RNU6-1258P-201ENST00000516911 111 ntBASIC0.9□□□□□ -2.27
USP28Q96RU2 RNU7-70P-201ENST00000516941 66 ntBASIC0.9□□□□□ -2.27
USP28Q96RU2 AC013244.2-201ENST00000603396 103 ntBASIC0.9□□□□□ -2.27
USP28Q96RU2 MIR6857-201ENST00000613267 93 ntBASIC0.9□□□□□ -2.27
USP28Q96RU2 MIR96-201ENST00000362288 78 ntBASIC0.89□□□□□ -2.27
USP28Q96RU2 Y_RNA.215-201ENST00000364204 112 ntBASIC0.89□□□□□ -2.27
USP28Q96RU2 Y_RNA.400-201ENST00000383963 111 ntBASIC0.89□□□□□ -2.27
USP28Q96RU2 MIR569-201ENST00000385228 96 ntBASIC0.89□□□□□ -2.27
USP28Q96RU2 SNORD12-201ENST00000391002 90 ntBASIC0.89□□□□□ -2.27
USP28Q96RU2 RNU6-321P-201ENST00000410912 106 ntBASIC0.89□□□□□ -2.27
USP28Q96RU2 AC015818.7-201ENST00000428754 109 ntBASIC0.89□□□□□ -2.27
USP28Q96RU2 AC087499.7-201ENST00000441958 109 ntBASIC0.89□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms