Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.02□□□□□ -2.09
PTCHD1Q96NR3 RNU4-67P-201ENST00000364569 141 ntBASIC2.02□□□□□ -2.09
PTCHD1Q96NR3 SNORA32-201ENST00000384072 121 ntBASIC2.02□□□□□ -2.09
PTCHD1Q96NR3 RNU4-52P-201ENST00000384209 138 ntBASIC2.02□□□□□ -2.09
PTCHD1Q96NR3 RNU6-616P-201ENST00000384353 107 ntBASIC2.02□□□□□ -2.09
PTCHD1Q96NR3 MIR1261-201ENST00000408659 82 ntBASIC2.02□□□□□ -2.09
PTCHD1Q96NR3 MIR1270-201ENST00000459320 83 ntBASIC2.02□□□□□ -2.09
PTCHD1Q96NR3 MIR514B-201ENST00000516774 80 ntBASIC2.02□□□□□ -2.09
PTCHD1Q96NR3 MIR6715A-201ENST00000615929 79 ntBASIC2.02□□□□□ -2.09
PTCHD1Q96NR3 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.02□□□□□ -2.09
PTCHD1Q96NR3 MIR4251-201ENST00000635819 61 ntBASIC2.02□□□□□ -2.09
PTCHD1Q96NR3 RNU4-36P-201ENST00000364294 144 ntBASIC2.01□□□□□ -2.09
PTCHD1Q96NR3 Y_RNA.354-201ENST00000365448 111 ntBASIC2.01□□□□□ -2.09
PTCHD1Q96NR3 RNU6-409P-201ENST00000384114 104 ntBASIC2.01□□□□□ -2.09
PTCHD1Q96NR3 RNU6-733P-201ENST00000410759 104 ntBASIC2.01□□□□□ -2.09
PTCHD1Q96NR3 AC104435.1-201ENST00000483483 166 ntBASIC2.01□□□□□ -2.09
PTCHD1Q96NR3 AC079804.2-201ENST00000490376 200 ntBASIC2.01□□□□□ -2.09
PTCHD1Q96NR3 RNU7-41P-201ENST00000515917 61 ntBASIC2.01□□□□□ -2.09
PTCHD1Q96NR3 RNU1-41P-201ENST00000516161 162 ntBASIC2.01□□□□□ -2.09
PTCHD1Q96NR3 RNU1-48P-201ENST00000516400 162 ntBASIC2.01□□□□□ -2.09
PTCHD1Q96NR3 DEFB131E-201ENST00000532329 154 ntBASIC2.01□□□□□ -2.09
PTCHD1Q96NR3 MIR548AO-201ENST00000579992 96 ntBASIC2.01□□□□□ -2.09
PTCHD1Q96NR3 FAM71BP1-201ENST00000604431 523 ntBASIC2.01□□□□□ -2.09
PTCHD1Q96NR3 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
PTCHD1Q96NR3 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
PTCHD1Q96NR3 Y_RNA.369-201ENST00000365568 117 ntBASIC2□□□□□ -2.09
PTCHD1Q96NR3 SNORA64-201ENST00000384674 134 ntBASIC2□□□□□ -2.09
PTCHD1Q96NR3 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2□□□□□ -2.09
PTCHD1Q96NR3 AC090255.1-201ENST00000495779 349 ntBASIC2□□□□□ -2.09
PTCHD1Q96NR3 RNU6-970P-201ENST00000516312 107 ntBASIC2□□□□□ -2.09
PTCHD1Q96NR3 SNORD111.1-201ENST00000516421 86 ntBASIC2□□□□□ -2.09
PTCHD1Q96NR3 CYP3A52P-201ENST00000563326 91 ntBASIC2□□□□□ -2.09
PTCHD1Q96NR3 MIR4713-201ENST00000582691 75 ntBASIC2□□□□□ -2.09
PTCHD1Q96NR3 MIR8065-201ENST00000620577 100 ntBASIC2□□□□□ -2.09
PTCHD1Q96NR3 MIR4679-1-201ENST00000637619 75 ntBASIC2□□□□□ -2.09
PTCHD1Q96NR3 RNU6-1099P-201ENST00000363533 107 ntBASIC1.99□□□□□ -2.09
PTCHD1Q96NR3 RNA5SP37-201ENST00000365420 130 ntBASIC1.99□□□□□ -2.09
PTCHD1Q96NR3 Y_RNA.360-201ENST00000365512 102 ntBASIC1.99□□□□□ -2.09
PTCHD1Q96NR3 SNORA67.3-201ENST00000384366 140 ntBASIC1.99□□□□□ -2.09
PTCHD1Q96NR3 SNORD41-201ENST00000386967 70 ntBASIC1.99□□□□□ -2.09
PTCHD1Q96NR3 SNORA7.5-201ENST00000410672 110 ntBASIC1.99□□□□□ -2.09
PTCHD1Q96NR3 RNU6-602P-201ENST00000411155 105 ntBASIC1.99□□□□□ -2.09
PTCHD1Q96NR3 AC245047.7-201ENST00000440265 293 ntBASIC1.99□□□□□ -2.09
PTCHD1Q96NR3 RNU6-922P-201ENST00000516753 99 ntBASIC1.99□□□□□ -2.09
PTCHD1Q96NR3 AC015688.6-201ENST00000577737 104 ntBASIC1.99□□□□□ -2.09
PTCHD1Q96NR3 MIR4299-201ENST00000577899 72 ntBASIC1.99□□□□□ -2.09
PTCHD1Q96NR3 SNORA77B-201ENST00000578179 125 ntBASIC1.99□□□□□ -2.09
PTCHD1Q96NR3 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.99□□□□□ -2.09
PTCHD1Q96NR3 MIR219B-201ENST00000637023 88 ntBASIC1.99□□□□□ -2.09
PTCHD1Q96NR3 RNY3P2-201ENST00000362918 102 ntBASIC1.98□□□□□ -2.09
PTCHD1Q96NR3 RNU6-342P-201ENST00000384521 104 ntBASIC1.98□□□□□ -2.09
PTCHD1Q96NR3 MIR605-201ENST00000385078 83 ntBASIC1.98□□□□□ -2.09
PTCHD1Q96NR3 snoU13.26-201ENST00000459452 105 ntBASIC1.98□□□□□ -2.09
PTCHD1Q96NR3 MIR4694-201ENST00000578534 80 ntBASIC1.98□□□□□ -2.09
PTCHD1Q96NR3 MIR3935-201ENST00000583472 104 ntBASIC1.98□□□□□ -2.09
PTCHD1Q96NR3 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
PTCHD1Q96NR3 MIR8074-201ENST00000615081 81 ntBASIC1.98□□□□□ -2.09
PTCHD1Q96NR3 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
PTCHD1Q96NR3 SNORA18-201ENST00000384416 132 ntBASIC1.97□□□□□ -2.09
PTCHD1Q96NR3 MIR577-201ENST00000385196 96 ntBASIC1.97□□□□□ -2.09
PTCHD1Q96NR3 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
PTCHD1Q96NR3 AC090844.1-201ENST00000422019 156 ntBASIC1.97□□□□□ -2.09
PTCHD1Q96NR3 HMGN2P38-201ENST00000423806 265 ntBASIC1.97□□□□□ -2.09
PTCHD1Q96NR3 SCARNA23-201ENST00000516060 130 ntBASIC1.97□□□□□ -2.09
PTCHD1Q96NR3 RNU6-158P-201ENST00000517104 100 ntBASIC1.97□□□□□ -2.09
PTCHD1Q96NR3 AL096840.1-201ENST00000603287 93 ntBASIC1.97□□□□□ -2.09
PTCHD1Q96NR3 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.96□□□□□ -2.1
PTCHD1Q96NR3 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
PTCHD1Q96NR3 Y_RNA.10-201ENST00000362371 110 ntBASIC1.96□□□□□ -2.1
PTCHD1Q96NR3 RNU6-832P-201ENST00000363319 107 ntBASIC1.96□□□□□ -2.1
PTCHD1Q96NR3 RNA5SP48-201ENST00000363969 126 ntBASIC1.96□□□□□ -2.1
PTCHD1Q96NR3 MIR504-201ENST00000385065 83 ntBASIC1.96□□□□□ -2.1
PTCHD1Q96NR3 RNU6-679P-201ENST00000391003 106 ntBASIC1.96□□□□□ -2.1
PTCHD1Q96NR3 RNU2-40P-201ENST00000410833 196 ntBASIC1.96□□□□□ -2.1
PTCHD1Q96NR3 MTATP8P2-201ENST00000435212 202 ntBASIC1.96□□□□□ -2.1
PTCHD1Q96NR3 AL353813.1-201ENST00000440700 253 ntBASIC1.96□□□□□ -2.1
PTCHD1Q96NR3 AC009474.2-201ENST00000451383 136 ntBASIC1.96□□□□□ -2.1
PTCHD1Q96NR3 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.96□□□□□ -2.1
PTCHD1Q96NR3 RNU6-521P-201ENST00000516663 105 ntBASIC1.96□□□□□ -2.1
PTCHD1Q96NR3 MIR5002-201ENST00000584713 97 ntBASIC1.96□□□□□ -2.1
PTCHD1Q96NR3 MIR2052-201ENST00000636055 55 ntBASIC1.96□□□□□ -2.1
PTCHD1Q96NR3 AL359851.1-201ENST00000569460 4997 ntBASIC1.95□□□□□ -2.1
PTCHD1Q96NR3 Y_RNA.93-201ENST00000363066 109 ntBASIC1.95□□□□□ -2.1
PTCHD1Q96NR3 Y_RNA.107-201ENST00000363190 121 ntBASIC1.95□□□□□ -2.1
PTCHD1Q96NR3 SNORD38B-201ENST00000384690 67 ntBASIC1.95□□□□□ -2.1
PTCHD1Q96NR3 Y_RNA.601-201ENST00000410500 113 ntBASIC1.95□□□□□ -2.1
PTCHD1Q96NR3 RNU7-35P-201ENST00000517174 62 ntBASIC1.95□□□□□ -2.1
PTCHD1Q96NR3 AL357312.1-201ENST00000603879 298 ntBASIC1.95□□□□□ -2.1
PTCHD1Q96NR3 SNORD38B-202ENST00000625943 69 ntBASIC1.95□□□□□ -2.1
PTCHD1Q96NR3 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
PTCHD1Q96NR3 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
PTCHD1Q96NR3 RNU6-1131P-201ENST00000364955 107 ntBASIC1.94□□□□□ -2.1
PTCHD1Q96NR3 AC019129.1-201ENST00000403786 261 ntBASIC1.94□□□□□ -2.1
PTCHD1Q96NR3 MIR3124-201ENST00000582636 67 ntBASIC1.94□□□□□ -2.1
PTCHD1Q96NR3 MIR3192-201ENST00000584920 77 ntBASIC1.94□□□□□ -2.1
PTCHD1Q96NR3 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.94□□□□□ -2.1
PTCHD1Q96NR3 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.93□□□□□ -2.1
PTCHD1Q96NR3 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
PTCHD1Q96NR3 snoU13.15-201ENST00000459407 104 ntBASIC1.93□□□□□ -2.1
PTCHD1Q96NR3 RNU6-1018P-201ENST00000516577 106 ntBASIC1.93□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 412.7 ms