Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 MIR660-201ENST00000385235 97 ntBASIC2□□□□□ -2.09
CLIP3Q96DZ5 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC2□□□□□ -2.09
CLIP3Q96DZ5 AL035398.1-201ENST00000430869 322 ntBASIC2□□□□□ -2.09
CLIP3Q96DZ5 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC2□□□□□ -2.09
CLIP3Q96DZ5 AC107297.1-201ENST00000459991 176 ntBASIC2□□□□□ -2.09
CLIP3Q96DZ5 RNU6-1258P-201ENST00000516911 111 ntBASIC2□□□□□ -2.09
CLIP3Q96DZ5 FAS-AS1.2-201ENST00000620386 170 ntBASIC2□□□□□ -2.09
CLIP3Q96DZ5 SNORD3E-202ENST00000627253 216 ntBASIC2□□□□□ -2.09
CLIP3Q96DZ5 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
CLIP3Q96DZ5 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.99□□□□□ -2.09
CLIP3Q96DZ5 RNY3P2-201ENST00000362918 102 ntBASIC1.99□□□□□ -2.09
CLIP3Q96DZ5 Y_RNA.107-201ENST00000363190 121 ntBASIC1.99□□□□□ -2.09
CLIP3Q96DZ5 RNA5SP173-201ENST00000364857 136 ntBASIC1.99□□□□□ -2.09
CLIP3Q96DZ5 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.99□□□□□ -2.09
CLIP3Q96DZ5 MIR1270-201ENST00000459320 83 ntBASIC1.99□□□□□ -2.09
CLIP3Q96DZ5 AC005908.1-201ENST00000468701 347 ntBASIC1.99□□□□□ -2.09
CLIP3Q96DZ5 SCARNA23-201ENST00000516060 130 ntBASIC1.99□□□□□ -2.09
CLIP3Q96DZ5 DEFB131E-201ENST00000532329 154 ntBASIC1.99□□□□□ -2.09
CLIP3Q96DZ5 MIR4524B-201ENST00000581569 115 ntBASIC1.99□□□□□ -2.09
CLIP3Q96DZ5 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.99□□□□□ -2.09
CLIP3Q96DZ5 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
CLIP3Q96DZ5 WWP1P1-201ENST00000466609 2769 ntBASIC1.99□□□□□ -2.09
CLIP3Q96DZ5 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC1.98□□□□□ -2.09
CLIP3Q96DZ5 RNU6-363P-201ENST00000362895 105 ntBASIC1.98□□□□□ -2.09
CLIP3Q96DZ5 MIR577-201ENST00000385196 96 ntBASIC1.98□□□□□ -2.09
CLIP3Q96DZ5 RNU6-592P-201ENST00000411333 103 ntBASIC1.98□□□□□ -2.09
CLIP3Q96DZ5 RNU2-11P-201ENST00000459191 187 ntBASIC1.98□□□□□ -2.09
CLIP3Q96DZ5 RNU7-45P-201ENST00000459460 63 ntBASIC1.98□□□□□ -2.09
CLIP3Q96DZ5 RN7SKP12-201ENST00000516275 143 ntBASIC1.98□□□□□ -2.09
CLIP3Q96DZ5 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.98□□□□□ -2.09
CLIP3Q96DZ5 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
CLIP3Q96DZ5 Y_RNA.171-201ENST00000363760 102 ntBASIC1.97□□□□□ -2.09
CLIP3Q96DZ5 MIR513A1-201ENST00000385138 129 ntBASIC1.97□□□□□ -2.09
CLIP3Q96DZ5 RNU6-1275P-201ENST00000391087 107 ntBASIC1.97□□□□□ -2.09
CLIP3Q96DZ5 Y_RNA.601-201ENST00000410500 113 ntBASIC1.97□□□□□ -2.09
CLIP3Q96DZ5 AL022718.1-201ENST00000412004 84 ntBASIC1.97□□□□□ -2.09
CLIP3Q96DZ5 RPL31P63-201ENST00000422565 375 ntBASIC1.97□□□□□ -2.09
CLIP3Q96DZ5 HSPE1P24-201ENST00000450782 238 ntBASIC1.97□□□□□ -2.09
CLIP3Q96DZ5 RNU6-893P-201ENST00000458841 100 ntBASIC1.97□□□□□ -2.09
CLIP3Q96DZ5 RNU7-12P-201ENST00000516030 62 ntBASIC1.97□□□□□ -2.09
CLIP3Q96DZ5 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.97□□□□□ -2.09
CLIP3Q96DZ5 AC015688.6-201ENST00000577737 104 ntBASIC1.97□□□□□ -2.09
CLIP3Q96DZ5 AL513534.2-201ENST00000603836 250 ntBASIC1.97□□□□□ -2.09
CLIP3Q96DZ5 MIR6841-201ENST00000637129 72 ntBASIC1.97□□□□□ -2.09
CLIP3Q96DZ5 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
CLIP3Q96DZ5 SNORD115-2-201ENST00000362842 82 ntBASIC1.96□□□□□ -2.1
CLIP3Q96DZ5 RNU4-36P-201ENST00000364294 144 ntBASIC1.96□□□□□ -2.1
CLIP3Q96DZ5 Y_RNA.290-201ENST00000364879 114 ntBASIC1.96□□□□□ -2.1
CLIP3Q96DZ5 SNORD115-20-201ENST00000365099 82 ntBASIC1.96□□□□□ -2.1
CLIP3Q96DZ5 Y_RNA.360-201ENST00000365512 102 ntBASIC1.96□□□□□ -2.1
CLIP3Q96DZ5 RNU6-573P-201ENST00000383938 106 ntBASIC1.96□□□□□ -2.1
CLIP3Q96DZ5 RNU6-1152P-201ENST00000384576 107 ntBASIC1.96□□□□□ -2.1
CLIP3Q96DZ5 MIR605-201ENST00000385078 83 ntBASIC1.96□□□□□ -2.1
CLIP3Q96DZ5 RNU6-1319P-201ENST00000390855 104 ntBASIC1.96□□□□□ -2.1
CLIP3Q96DZ5 RNU6-747P-201ENST00000390928 104 ntBASIC1.96□□□□□ -2.1
CLIP3Q96DZ5 RNU6-241P-201ENST00000391148 104 ntBASIC1.96□□□□□ -2.1
CLIP3Q96DZ5 SNORA26.6-201ENST00000391256 115 ntBASIC1.96□□□□□ -2.1
CLIP3Q96DZ5 MIR934-201ENST00000401241 83 ntBASIC1.96□□□□□ -2.1
CLIP3Q96DZ5 RNU6-177P-201ENST00000411257 104 ntBASIC1.96□□□□□ -2.1
CLIP3Q96DZ5 RNU2-13P-201ENST00000515909 113 ntBASIC1.96□□□□□ -2.1
CLIP3Q96DZ5 AC026421.1-201ENST00000519101 163 ntBASIC1.96□□□□□ -2.1
CLIP3Q96DZ5 MIR4694-201ENST00000578534 80 ntBASIC1.96□□□□□ -2.1
CLIP3Q96DZ5 Y_RNA.783-201ENST00000613546 102 ntBASIC1.96□□□□□ -2.1
CLIP3Q96DZ5 MIR8063-201ENST00000621930 81 ntBASIC1.96□□□□□ -2.1
CLIP3Q96DZ5 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
CLIP3Q96DZ5 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
CLIP3Q96DZ5 RNY1P10-201ENST00000363268 113 ntBASIC1.95□□□□□ -2.1
CLIP3Q96DZ5 RNU6-832P-201ENST00000363319 107 ntBASIC1.95□□□□□ -2.1
CLIP3Q96DZ5 SNORA24-201ENST00000384096 131 ntBASIC1.95□□□□□ -2.1
CLIP3Q96DZ5 Y_RNA.470-201ENST00000384307 117 ntBASIC1.95□□□□□ -2.1
CLIP3Q96DZ5 MIR450A2-201ENST00000385022 100 ntBASIC1.95□□□□□ -2.1
CLIP3Q96DZ5 AC019129.1-201ENST00000403786 261 ntBASIC1.95□□□□□ -2.1
CLIP3Q96DZ5 AL591806.2-201ENST00000433122 173 ntBASIC1.95□□□□□ -2.1
CLIP3Q96DZ5 DEFB122-202ENST00000569013 197 ntBASIC1.95□□□□□ -2.1
CLIP3Q96DZ5 MIR3935-201ENST00000583472 104 ntBASIC1.95□□□□□ -2.1
CLIP3Q96DZ5 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.95□□□□□ -2.1
CLIP3Q96DZ5 AC012531.4-201ENST00000616509 177 ntBASIC1.95□□□□□ -2.1
CLIP3Q96DZ5 MIR1245B-201ENST00000636115 69 ntBASIC1.95□□□□□ -2.1
CLIP3Q96DZ5 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC1.95□□□□□ -2.1
CLIP3Q96DZ5 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.94□□□□□ -2.1
CLIP3Q96DZ5 RNU4-67P-201ENST00000364569 141 ntBASIC1.94□□□□□ -2.1
CLIP3Q96DZ5 RNA5SP259-201ENST00000365541 109 ntBASIC1.94□□□□□ -2.1
CLIP3Q96DZ5 RNU6-820P-201ENST00000384273 107 ntBASIC1.94□□□□□ -2.1
CLIP3Q96DZ5 Y_RNA.507-201ENST00000384500 99 ntBASIC1.94□□□□□ -2.1
CLIP3Q96DZ5 MIR516B2-201ENST00000385190 85 ntBASIC1.94□□□□□ -2.1
CLIP3Q96DZ5 RNU6-679P-201ENST00000391003 106 ntBASIC1.94□□□□□ -2.1
CLIP3Q96DZ5 Y_RNA.593-201ENST00000410292 98 ntBASIC1.94□□□□□ -2.1
CLIP3Q96DZ5 RNU4-69P-201ENST00000410677 143 ntBASIC1.94□□□□□ -2.1
CLIP3Q96DZ5 RNU6-1190P-201ENST00000410811 104 ntBASIC1.94□□□□□ -2.1
CLIP3Q96DZ5 AC096949.1-201ENST00000412047 152 ntBASIC1.94□□□□□ -2.1
CLIP3Q96DZ5 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.94□□□□□ -2.1
CLIP3Q96DZ5 RN7SL274P-201ENST00000492268 272 ntBASIC1.94□□□□□ -2.1
CLIP3Q96DZ5 AP003327.1-201ENST00000529684 127 ntBASIC1.94□□□□□ -2.1
CLIP3Q96DZ5 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.94□□□□□ -2.1
CLIP3Q96DZ5 MIR548Z-201ENST00000584743 97 ntBASIC1.94□□□□□ -2.1
CLIP3Q96DZ5 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.94□□□□□ -2.1
CLIP3Q96DZ5 MIR302D-201ENST00000362275 68 ntBASIC1.93□□□□□ -2.1
CLIP3Q96DZ5 RNA5SP432-201ENST00000362480 116 ntBASIC1.93□□□□□ -2.1
CLIP3Q96DZ5 SNORD33-201ENST00000362761 85 ntBASIC1.93□□□□□ -2.1
CLIP3Q96DZ5 RNU6-170P-201ENST00000362832 104 ntBASIC1.93□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 168.7 ms