Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 MIR148A-201ENST00000362215 68 ntBASIC-0.61□□□□□ -2.51
CCDC112Q8NEF3 SNORD49B-201ENST00000365172 72 ntBASIC-0.61□□□□□ -2.51
CCDC112Q8NEF3 SNORD14C-201ENST00000365382 88 ntBASIC-0.61□□□□□ -2.51
CCDC112Q8NEF3 Y_RNA.351-201ENST00000365436 96 ntBASIC-0.61□□□□□ -2.51
CCDC112Q8NEF3 RNU6-30P-201ENST00000384561 107 ntBASIC-0.61□□□□□ -2.51
CCDC112Q8NEF3 MIR1277-201ENST00000408536 78 ntBASIC-0.61□□□□□ -2.51
CCDC112Q8NEF3 AC109327.2-201ENST00000448339 378 ntBASIC-0.61□□□□□ -2.51
CCDC112Q8NEF3 AC244505.6-201ENST00000452829 130 ntBASIC-0.61□□□□□ -2.51
CCDC112Q8NEF3 AC069439.1-201ENST00000494739 167 ntBASIC-0.61□□□□□ -2.51
CCDC112Q8NEF3 RNU6-1265P-201ENST00000516342 103 ntBASIC-0.61□□□□□ -2.51
CCDC112Q8NEF3 RNU7-161P-201ENST00000517289 62 ntBASIC-0.61□□□□□ -2.51
CCDC112Q8NEF3 AC026407.1-201ENST00000518369 204 ntBASIC-0.61□□□□□ -2.51
CCDC112Q8NEF3 MIR4724-201ENST00000579485 89 ntBASIC-0.61□□□□□ -2.51
CCDC112Q8NEF3 SNORD113-5-201ENST00000607261 78 ntBASIC-0.61□□□□□ -2.51
CCDC112Q8NEF3 WT1-AS_8.1-201ENST00000615200 275 ntBASIC-0.61□□□□□ -2.51
CCDC112Q8NEF3 MIR376A2-201ENST00000636782 80 ntBASIC-0.61□□□□□ -2.51
CCDC112Q8NEF3 MIR6841-201ENST00000637129 72 ntBASIC-0.61□□□□□ -2.51
CCDC112Q8NEF3 MIR367-201ENST00000362299 68 ntBASIC-0.62□□□□□ -2.51
CCDC112Q8NEF3 SNORD95.1-201ENST00000364099 68 ntBASIC-0.62□□□□□ -2.51
CCDC112Q8NEF3 Y_RNA.439-201ENST00000384119 94 ntBASIC-0.62□□□□□ -2.51
CCDC112Q8NEF3 MIR876-201ENST00000401147 81 ntBASIC-0.62□□□□□ -2.51
CCDC112Q8NEF3 RNU6-720P-201ENST00000516363 108 ntBASIC-0.62□□□□□ -2.51
CCDC112Q8NEF3 RNU6-531P-201ENST00000516694 104 ntBASIC-0.62□□□□□ -2.51
CCDC112Q8NEF3 MIR5692C2-201ENST00000577959 77 ntBASIC-0.62□□□□□ -2.51
CCDC112Q8NEF3 C8orf59P2-201ENST00000603441 271 ntBASIC-0.62□□□□□ -2.51
CCDC112Q8NEF3 MTRNR2L2-201ENST00000604882 87 ntBASIC-0.62□□□□□ -2.51
CCDC112Q8NEF3 Y_RNA.3-201ENST00000362331 103 ntBASIC-0.63□□□□□ -2.51
CCDC112Q8NEF3 Y_RNA.136-201ENST00000363444 102 ntBASIC-0.63□□□□□ -2.51
CCDC112Q8NEF3 RNU6-702P-201ENST00000364982 107 ntBASIC-0.63□□□□□ -2.51
CCDC112Q8NEF3 Y_RNA.516-201ENST00000384541 124 ntBASIC-0.63□□□□□ -2.51
CCDC112Q8NEF3 MIR224-201ENST00000384889 81 ntBASIC-0.63□□□□□ -2.51
CCDC112Q8NEF3 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC-0.63□□□□□ -2.51
CCDC112Q8NEF3 MIR548L-201ENST00000408303 86 ntBASIC-0.63□□□□□ -2.51
CCDC112Q8NEF3 MIR548F1-201ENST00000408667 84 ntBASIC-0.63□□□□□ -2.51
CCDC112Q8NEF3 RNU6ATAC25P-201ENST00000408798 117 ntBASIC-0.63□□□□□ -2.51
CCDC112Q8NEF3 Y_RNA.653-201ENST00000459091 95 ntBASIC-0.63□□□□□ -2.51
CCDC112Q8NEF3 SNORD126-201ENST00000459475 77 ntBASIC-0.63□□□□□ -2.51
CCDC112Q8NEF3 MRPS35P2-201ENST00000508242 191 ntBASIC-0.63□□□□□ -2.51
CCDC112Q8NEF3 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC-0.63□□□□□ -2.51
CCDC112Q8NEF3 SNORA1-201ENST00000384107 130 ntBASIC-0.64□□□□□ -2.51
CCDC112Q8NEF3 SNORD116-2-201ENST00000384274 95 ntBASIC-0.64□□□□□ -2.51
CCDC112Q8NEF3 Y_RNA.477-201ENST00000384352 108 ntBASIC-0.64□□□□□ -2.51
CCDC112Q8NEF3 SNORD116-6-201ENST00000384711 96 ntBASIC-0.64□□□□□ -2.51
CCDC112Q8NEF3 SNORD41.1-201ENST00000391000 69 ntBASIC-0.64□□□□□ -2.51
CCDC112Q8NEF3 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.64□□□□□ -2.51
CCDC112Q8NEF3 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC-0.64□□□□□ -2.51
CCDC112Q8NEF3 RNU6-358P-201ENST00000516564 75 ntBASIC-0.64□□□□□ -2.51
CCDC112Q8NEF3 AC091932.4-201ENST00000623386 200 ntBASIC-0.64□□□□□ -2.51
CCDC112Q8NEF3 AC073869.9-201ENST00000641610 120 ntBASIC-0.64□□□□□ -2.51
CCDC112Q8NEF3 MIR655-201ENST00000362159 97 ntBASIC-0.65□□□□□ -2.51
CCDC112Q8NEF3 RNU6-845P-201ENST00000362578 103 ntBASIC-0.65□□□□□ -2.51
CCDC112Q8NEF3 Y_RNA.125-201ENST00000363371 111 ntBASIC-0.65□□□□□ -2.51
CCDC112Q8NEF3 Y_RNA.166-201ENST00000363730 102 ntBASIC-0.65□□□□□ -2.51
CCDC112Q8NEF3 SNORA18-201ENST00000384416 132 ntBASIC-0.65□□□□□ -2.51
CCDC112Q8NEF3 RNU6-1086P-201ENST00000410930 100 ntBASIC-0.65□□□□□ -2.51
CCDC112Q8NEF3 RNU5E-9P-201ENST00000411164 104 ntBASIC-0.65□□□□□ -2.51
CCDC112Q8NEF3 U8.20-201ENST00000459445 131 ntBASIC-0.65□□□□□ -2.51
CCDC112Q8NEF3 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-0.65□□□□□ -2.51
CCDC112Q8NEF3 MIR548AZ-201ENST00000616567 95 ntBASIC-0.65□□□□□ -2.51
CCDC112Q8NEF3 AL162726.3-218ENST00000636401 95 ntBASIC-0.65□□□□□ -2.51
CCDC112Q8NEF3 Y_RNA.91-201ENST00000363042 107 ntBASIC-0.66□□□□□ -2.52
CCDC112Q8NEF3 RNU4-58P-201ENST00000363192 141 ntBASIC-0.66□□□□□ -2.52
CCDC112Q8NEF3 RNA5SP403-201ENST00000363598 108 ntBASIC-0.66□□□□□ -2.52
CCDC112Q8NEF3 Y_RNA.634-201ENST00000364811 113 ntBASIC-0.66□□□□□ -2.52
CCDC112Q8NEF3 Y_RNA.424-201ENST00000384063 103 ntBASIC-0.66□□□□□ -2.52
CCDC112Q8NEF3 SNORA32.3-201ENST00000384772 121 ntBASIC-0.66□□□□□ -2.52
CCDC112Q8NEF3 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC-0.66□□□□□ -2.52
CCDC112Q8NEF3 MTATP6P26-201ENST00000445926 662 ntBASIC-0.66□□□□□ -2.52
CCDC112Q8NEF3 RNU7-80P-201ENST00000459562 61 ntBASIC-0.66□□□□□ -2.52
CCDC112Q8NEF3 RNU6-718P-201ENST00000516166 105 ntBASIC-0.66□□□□□ -2.52
CCDC112Q8NEF3 Y_RNA.713-201ENST00000517013 96 ntBASIC-0.66□□□□□ -2.52
CCDC112Q8NEF3 RPS29P30-201ENST00000600975 111 ntBASIC-0.66□□□□□ -2.52
CCDC112Q8NEF3 MIR4788-201ENST00000639104 80 ntBASIC-0.66□□□□□ -2.52
CCDC112Q8NEF3 SNORA22.1-201ENST00000362701 134 ntBASIC-0.67□□□□□ -2.52
CCDC112Q8NEF3 Y_RNA.380-201ENST00000365663 111 ntBASIC-0.67□□□□□ -2.52
CCDC112Q8NEF3 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.67□□□□□ -2.52
CCDC112Q8NEF3 Y_RNA.474-201ENST00000384341 102 ntBASIC-0.67□□□□□ -2.52
CCDC112Q8NEF3 MIR196A2-201ENST00000385189 110 ntBASIC-0.67□□□□□ -2.52
CCDC112Q8NEF3 MIR526A2-201ENST00000390198 65 ntBASIC-0.67□□□□□ -2.52
CCDC112Q8NEF3 RNU6-130P-201ENST00000411112 103 ntBASIC-0.67□□□□□ -2.52
CCDC112Q8NEF3 Y_RNA.715-201ENST00000517082 110 ntBASIC-0.67□□□□□ -2.52
CCDC112Q8NEF3 DEFB131E-201ENST00000532329 154 ntBASIC-0.67□□□□□ -2.52
CCDC112Q8NEF3 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC-0.67□□□□□ -2.52
CCDC112Q8NEF3 MIR5688-201ENST00000580619 83 ntBASIC-0.67□□□□□ -2.52
CCDC112Q8NEF3 Y_RNA.56-201ENST00000362798 112 ntBASIC-0.68□□□□□ -2.52
CCDC112Q8NEF3 Y_RNA.293-201ENST00000364908 93 ntBASIC-0.68□□□□□ -2.52
CCDC112Q8NEF3 Y_RNA.304-201ENST00000365011 112 ntBASIC-0.68□□□□□ -2.52
CCDC112Q8NEF3 RNU6-1040P-201ENST00000383974 107 ntBASIC-0.68□□□□□ -2.52
CCDC112Q8NEF3 RNU6-484P-201ENST00000384016 107 ntBASIC-0.68□□□□□ -2.52
CCDC112Q8NEF3 RNU6-811P-201ENST00000384069 107 ntBASIC-0.68□□□□□ -2.52
CCDC112Q8NEF3 Y_RNA.428-201ENST00000384078 102 ntBASIC-0.68□□□□□ -2.52
CCDC112Q8NEF3 Y_RNA.463-201ENST00000384271 102 ntBASIC-0.68□□□□□ -2.52
CCDC112Q8NEF3 Y_RNA.496-201ENST00000384444 101 ntBASIC-0.68□□□□□ -2.52
CCDC112Q8NEF3 AC244250.2-201ENST00000418731 148 ntBASIC-0.68□□□□□ -2.52
CCDC112Q8NEF3 PMCHL1-202ENST00000423102 261 ntBASIC-0.68□□□□□ -2.52
CCDC112Q8NEF3 RNU7-104P-201ENST00000459398 79 ntBASIC-0.68□□□□□ -2.52
CCDC112Q8NEF3 SNORA40.14-201ENST00000516543 86 ntBASIC-0.68□□□□□ -2.52
CCDC112Q8NEF3 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.68□□□□□ -2.52
CCDC112Q8NEF3 SNORD116.3-201ENST00000517176 78 ntBASIC-0.68□□□□□ -2.52
CCDC112Q8NEF3 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC-0.68□□□□□ -2.52
Retrieved 100 of 98,524 protein–RNA pairs in 118.8 ms