Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC108081.1-201ENST00000604358 221 ntBASIC1.61□□□□□ -2.15
VPS53Q5VIR6 GHRLOS.1-201ENST00000610995 70 ntBASIC1.61□□□□□ -2.15
VPS53Q5VIR6 AL157834.3-201ENST00000615543 103 ntBASIC1.61□□□□□ -2.15
VPS53Q5VIR6 AL161722.3-201ENST00000605789 2983 ntBASIC1.61□□□□□ -2.15
VPS53Q5VIR6 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.61□□□□□ -2.15
VPS53Q5VIR6 RNA5SP205-201ENST00000364653 136 ntBASIC1.6□□□□□ -2.15
VPS53Q5VIR6 RNU6-690P-201ENST00000365242 106 ntBASIC1.6□□□□□ -2.15
VPS53Q5VIR6 SNORA22C-201ENST00000384614 134 ntBASIC1.6□□□□□ -2.15
VPS53Q5VIR6 Y_RNA.563-201ENST00000384707 108 ntBASIC1.6□□□□□ -2.15
VPS53Q5VIR6 RPS29P23-201ENST00000458635 123 ntBASIC1.6□□□□□ -2.15
VPS53Q5VIR6 RNU1-123P-201ENST00000458950 160 ntBASIC1.6□□□□□ -2.15
VPS53Q5VIR6 RNU7-107P-201ENST00000459121 61 ntBASIC1.6□□□□□ -2.15
VPS53Q5VIR6 snoU13.16-201ENST00000459350 104 ntBASIC1.6□□□□□ -2.15
VPS53Q5VIR6 RPL30P7-201ENST00000479312 323 ntBASIC1.6□□□□□ -2.15
VPS53Q5VIR6 RNU6-772P-201ENST00000516042 105 ntBASIC1.6□□□□□ -2.15
VPS53Q5VIR6 SNORD111.1-201ENST00000516421 86 ntBASIC1.6□□□□□ -2.15
VPS53Q5VIR6 RNU6-958P-201ENST00000516995 106 ntBASIC1.6□□□□□ -2.15
VPS53Q5VIR6 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
VPS53Q5VIR6 SNORA7.1-201ENST00000363750 139 ntBASIC1.59□□□□□ -2.15
VPS53Q5VIR6 MIR570-201ENST00000384917 97 ntBASIC1.59□□□□□ -2.15
VPS53Q5VIR6 RN7SKP19-201ENST00000516016 252 ntBASIC1.59□□□□□ -2.15
VPS53Q5VIR6 SNORA31.4-201ENST00000516049 129 ntBASIC1.59□□□□□ -2.15
VPS53Q5VIR6 RNU6-240P-201ENST00000516098 97 ntBASIC1.59□□□□□ -2.15
VPS53Q5VIR6 AL512310.8-201ENST00000550183 120 ntBASIC1.59□□□□□ -2.15
VPS53Q5VIR6 AL137067.1-201ENST00000615933 120 ntBASIC1.59□□□□□ -2.15
VPS53Q5VIR6 Y_RNA.261-201ENST00000364631 102 ntBASIC1.58□□□□□ -2.16
VPS53Q5VIR6 SNORD58C-201ENST00000365223 64 ntBASIC1.58□□□□□ -2.16
VPS53Q5VIR6 Y_RNA.366-201ENST00000365540 102 ntBASIC1.58□□□□□ -2.16
VPS53Q5VIR6 MIRLET7F2-201ENST00000385277 83 ntBASIC1.58□□□□□ -2.16
VPS53Q5VIR6 RNA5SP261-201ENST00000410536 106 ntBASIC1.58□□□□□ -2.16
VPS53Q5VIR6 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.58□□□□□ -2.16
VPS53Q5VIR6 AC133485.4-201ENST00000561835 220 ntBASIC1.58□□□□□ -2.16
VPS53Q5VIR6 AC138907.4-201ENST00000570107 226 ntBASIC1.58□□□□□ -2.16
VPS53Q5VIR6 AC021613.1-201ENST00000623880 111 ntBASIC1.58□□□□□ -2.16
VPS53Q5VIR6 RNA5SP48-201ENST00000363969 126 ntBASIC1.57□□□□□ -2.16
VPS53Q5VIR6 SNORD26-201ENST00000384147 75 ntBASIC1.57□□□□□ -2.16
VPS53Q5VIR6 RNU6-1319P-201ENST00000390855 104 ntBASIC1.57□□□□□ -2.16
VPS53Q5VIR6 RNU6-747P-201ENST00000390928 104 ntBASIC1.57□□□□□ -2.16
VPS53Q5VIR6 RNU6-241P-201ENST00000391148 104 ntBASIC1.57□□□□□ -2.16
VPS53Q5VIR6 RNA5SP136-201ENST00000410906 107 ntBASIC1.57□□□□□ -2.16
VPS53Q5VIR6 RNU6-177P-201ENST00000411257 104 ntBASIC1.57□□□□□ -2.16
VPS53Q5VIR6 IGKV1-22-201ENST00000524313 326 ntBASIC1.57□□□□□ -2.16
VPS53Q5VIR6 AL020996.3-201ENST00000606617 222 ntBASIC1.57□□□□□ -2.16
VPS53Q5VIR6 snoU13.31-201ENST00000607291 104 ntBASIC1.57□□□□□ -2.16
VPS53Q5VIR6 MIR4251-201ENST00000635819 61 ntBASIC1.57□□□□□ -2.16
VPS53Q5VIR6 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC1.57□□□□□ -2.16
VPS53Q5VIR6 MIR3914-2-201ENST00000637339 95 ntBASIC1.57□□□□□ -2.16
VPS53Q5VIR6 RNU6-913P-201ENST00000390913 95 ntBASIC1.56□□□□□ -2.16
VPS53Q5VIR6 RNU6-893P-201ENST00000458841 100 ntBASIC1.56□□□□□ -2.16
VPS53Q5VIR6 RNU7-41P-201ENST00000515917 61 ntBASIC1.56□□□□□ -2.16
VPS53Q5VIR6 RNU6-1061P-201ENST00000516530 99 ntBASIC1.56□□□□□ -2.16
VPS53Q5VIR6 MIR3660-201ENST00000584845 100 ntBASIC1.56□□□□□ -2.16
VPS53Q5VIR6 AC021443.1-201ENST00000604478 211 ntBASIC1.56□□□□□ -2.16
VPS53Q5VIR6 U6.95-201ENST00000636931 70 ntBASIC1.56□□□□□ -2.16
VPS53Q5VIR6 Y_RNA.430-201ENST00000384081 110 ntBASIC1.55□□□□□ -2.16
VPS53Q5VIR6 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.55□□□□□ -2.16
VPS53Q5VIR6 SNORA26.6-201ENST00000391256 115 ntBASIC1.55□□□□□ -2.16
VPS53Q5VIR6 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.55□□□□□ -2.16
VPS53Q5VIR6 RNU6-781P-201ENST00000516377 101 ntBASIC1.55□□□□□ -2.16
VPS53Q5VIR6 CYP3A52P-201ENST00000563326 91 ntBASIC1.55□□□□□ -2.16
VPS53Q5VIR6 MIR3664-201ENST00000579074 99 ntBASIC1.55□□□□□ -2.16
VPS53Q5VIR6 MIR3152-201ENST00000579801 74 ntBASIC1.55□□□□□ -2.16
VPS53Q5VIR6 MIR4305-201ENST00000583252 102 ntBASIC1.55□□□□□ -2.16
VPS53Q5VIR6 AL359881.1-201ENST00000602916 267 ntBASIC1.55□□□□□ -2.16
VPS53Q5VIR6 MIR8055-201ENST00000610739 97 ntBASIC1.55□□□□□ -2.16
VPS53Q5VIR6 AL096861.1-201ENST00000610899 123 ntBASIC1.55□□□□□ -2.16
VPS53Q5VIR6 MIR8065-201ENST00000620577 100 ntBASIC1.55□□□□□ -2.16
VPS53Q5VIR6 RNU6-834P-201ENST00000362367 110 ntBASIC1.54□□□□□ -2.16
VPS53Q5VIR6 Y_RNA.525-201ENST00000384570 113 ntBASIC1.54□□□□□ -2.16
VPS53Q5VIR6 SNORA40.6-201ENST00000391153 128 ntBASIC1.54□□□□□ -2.16
VPS53Q5VIR6 RPL39P39-201ENST00000455840 151 ntBASIC1.54□□□□□ -2.16
VPS53Q5VIR6 RN7SKP88-201ENST00000516847 250 ntBASIC1.54□□□□□ -2.16
VPS53Q5VIR6 HSPE1P19-201ENST00000603327 295 ntBASIC1.54□□□□□ -2.16
VPS53Q5VIR6 7SK.8-201ENST00000612110 250 ntBASIC1.54□□□□□ -2.16
VPS53Q5VIR6 AC025166.1-201ENST00000612411 163 ntBASIC1.54□□□□□ -2.16
VPS53Q5VIR6 7SK.11-201ENST00000615477 250 ntBASIC1.54□□□□□ -2.16
VPS53Q5VIR6 7SK.13-201ENST00000622040 250 ntBASIC1.54□□□□□ -2.16
VPS53Q5VIR6 MIR6717-201ENST00000622747 73 ntBASIC1.54□□□□□ -2.16
VPS53Q5VIR6 MIR6841-201ENST00000637129 72 ntBASIC1.54□□□□□ -2.16
VPS53Q5VIR6 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.54□□□□□ -2.16
VPS53Q5VIR6 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.54□□□□□ -2.16
VPS53Q5VIR6 RNU4-16P-201ENST00000364737 141 ntBASIC1.53□□□□□ -2.16
VPS53Q5VIR6 Y_RNA.298-201ENST00000364960 107 ntBASIC1.53□□□□□ -2.16
VPS53Q5VIR6 Y_RNA.346-201ENST00000365385 112 ntBASIC1.53□□□□□ -2.16
VPS53Q5VIR6 MIR150-201ENST00000385048 84 ntBASIC1.53□□□□□ -2.16
VPS53Q5VIR6 RNA5SP144-201ENST00000410846 116 ntBASIC1.53□□□□□ -2.16
VPS53Q5VIR6 MIR3192-201ENST00000584920 77 ntBASIC1.53□□□□□ -2.16
VPS53Q5VIR6 Z97988.1-201ENST00000637697 135 ntBASIC1.53□□□□□ -2.16
VPS53Q5VIR6 Y_RNA.273-201ENST00000364703 102 ntBASIC1.52□□□□□ -2.17
VPS53Q5VIR6 Y_RNA.629-201ENST00000411368 105 ntBASIC1.52□□□□□ -2.17
VPS53Q5VIR6 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.52□□□□□ -2.17
VPS53Q5VIR6 RNU7-164P-201ENST00000459221 62 ntBASIC1.52□□□□□ -2.17
VPS53Q5VIR6 RNU7-45P-201ENST00000459460 63 ntBASIC1.52□□□□□ -2.17
VPS53Q5VIR6 COX6CP6-201ENST00000490840 228 ntBASIC1.52□□□□□ -2.17
VPS53Q5VIR6 RNU6-1053P-201ENST00000515930 101 ntBASIC1.52□□□□□ -2.17
VPS53Q5VIR6 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC1.52□□□□□ -2.17
VPS53Q5VIR6 MIR4498-201ENST00000577599 66 ntBASIC1.52□□□□□ -2.17
VPS53Q5VIR6 MIR548AO-201ENST00000579992 96 ntBASIC1.52□□□□□ -2.17
VPS53Q5VIR6 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.52□□□□□ -2.17
VPS53Q5VIR6 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.51□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms