Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 RNU6-199P-201ENST00000362954 107 ntBASIC0.8□□□□□ -2.28
SHHQ15465 RNU6-888P-201ENST00000363010 101 ntBASIC0.8□□□□□ -2.28
SHHQ15465 Y_RNA.336-201ENST00000365307 109 ntBASIC0.8□□□□□ -2.28
SHHQ15465 Y_RNA.363-201ENST00000365529 113 ntBASIC0.8□□□□□ -2.28
SHHQ15465 RNU6-35P-201ENST00000384530 107 ntBASIC0.8□□□□□ -2.28
SHHQ15465 MIR569-201ENST00000385228 96 ntBASIC0.8□□□□□ -2.28
SHHQ15465 RNU6-913P-201ENST00000390913 95 ntBASIC0.8□□□□□ -2.28
SHHQ15465 MIR1302-7-201ENST00000408841 72 ntBASIC0.8□□□□□ -2.28
SHHQ15465 RNA5SP95-201ENST00000410319 137 ntBASIC0.8□□□□□ -2.28
SHHQ15465 RNU4-43P-201ENST00000410628 137 ntBASIC0.8□□□□□ -2.28
SHHQ15465 SNORD123-201ENST00000459473 70 ntBASIC0.8□□□□□ -2.28
SHHQ15465 RPL39P28-201ENST00000465655 155 ntBASIC0.8□□□□□ -2.28
SHHQ15465 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.8□□□□□ -2.28
SHHQ15465 SNORA18.4-201ENST00000516440 124 ntBASIC0.8□□□□□ -2.28
SHHQ15465 MIR378D2-201ENST00000580636 98 ntBASIC0.8□□□□□ -2.28
SHHQ15465 MIR2909-201ENST00000617113 69 ntBASIC0.8□□□□□ -2.28
SHHQ15465 MIR6866-201ENST00000638146 69 ntBASIC0.8□□□□□ -2.28
SHHQ15465 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.79□□□□□ -2.28
SHHQ15465 RNU6-309P-201ENST00000364573 106 ntBASIC0.79□□□□□ -2.28
SHHQ15465 RNU6-442P-201ENST00000383968 104 ntBASIC0.79□□□□□ -2.28
SHHQ15465 Y_RNA.497-201ENST00000384447 98 ntBASIC0.79□□□□□ -2.28
SHHQ15465 MIR653-201ENST00000385279 96 ntBASIC0.79□□□□□ -2.28
SHHQ15465 RNU6-239P-201ENST00000390990 99 ntBASIC0.79□□□□□ -2.28
SHHQ15465 U8.17-201ENST00000391292 132 ntBASIC0.79□□□□□ -2.28
SHHQ15465 Y_RNA.651-201ENST00000459380 103 ntBASIC0.79□□□□□ -2.28
SHHQ15465 RPS26P48-201ENST00000491713 339 ntBASIC0.79□□□□□ -2.28
SHHQ15465 RNU6-351P-201ENST00000516097 100 ntBASIC0.79□□□□□ -2.28
SHHQ15465 RNU7-28P-201ENST00000516759 62 ntBASIC0.79□□□□□ -2.28
SHHQ15465 Y_RNA.700-201ENST00000516806 100 ntBASIC0.79□□□□□ -2.28
SHHQ15465 SCARNA15-202ENST00000516881 127 ntBASIC0.79□□□□□ -2.28
SHHQ15465 RNU6-365P-201ENST00000517113 106 ntBASIC0.79□□□□□ -2.28
SHHQ15465 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.79□□□□□ -2.28
SHHQ15465 MIR2681-201ENST00000581814 105 ntBASIC0.79□□□□□ -2.28
SHHQ15465 AC108081.1-201ENST00000604358 221 ntBASIC0.79□□□□□ -2.28
SHHQ15465 SNORA28-201ENST00000606769 126 ntBASIC0.79□□□□□ -2.28
SHHQ15465 uc_338.6-201ENST00000613544 171 ntBASIC0.79□□□□□ -2.28
SHHQ15465 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.79□□□□□ -2.28
SHHQ15465 AC243829.3-201ENST00000622177 108 ntBASIC0.79□□□□□ -2.28
SHHQ15465 Y_RNA.52-201ENST00000362760 96 ntBASIC0.78□□□□□ -2.28
SHHQ15465 RNU4-16P-201ENST00000364737 141 ntBASIC0.78□□□□□ -2.28
SHHQ15465 Y_RNA.521-201ENST00000384560 114 ntBASIC0.78□□□□□ -2.28
SHHQ15465 Y_RNA.542-201ENST00000384641 111 ntBASIC0.78□□□□□ -2.28
SHHQ15465 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.78□□□□□ -2.28
SHHQ15465 AC015818.7-201ENST00000428754 109 ntBASIC0.78□□□□□ -2.28
SHHQ15465 AC098934.3-201ENST00000430450 190 ntBASIC0.78□□□□□ -2.28
SHHQ15465 AC087499.7-201ENST00000441958 109 ntBASIC0.78□□□□□ -2.28
SHHQ15465 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC0.78□□□□□ -2.28
SHHQ15465 AC048334.1-201ENST00000477975 159 ntBASIC0.78□□□□□ -2.28
SHHQ15465 RNU6-1149P-201ENST00000516810 97 ntBASIC0.78□□□□□ -2.28
SHHQ15465 MIR548AO-201ENST00000579992 96 ntBASIC0.78□□□□□ -2.28
SHHQ15465 MIR4661-201ENST00000582720 75 ntBASIC0.78□□□□□ -2.28
SHHQ15465 Y_RNA.778-201ENST00000620203 90 ntBASIC0.78□□□□□ -2.28
SHHQ15465 AC027279.3-201ENST00000625055 122 ntBASIC0.78□□□□□ -2.28
SHHQ15465 SNORD115-28-201ENST00000363931 81 ntBASIC0.77□□□□□ -2.29
SHHQ15465 SNORD114-2-201ENST00000363953 78 ntBASIC0.77□□□□□ -2.29
SHHQ15465 Y_RNA.215-201ENST00000364204 112 ntBASIC0.77□□□□□ -2.29
SHHQ15465 RNU6-654P-201ENST00000364373 107 ntBASIC0.77□□□□□ -2.29
SHHQ15465 RNU6-312P-201ENST00000364629 107 ntBASIC0.77□□□□□ -2.29
SHHQ15465 RNU6-1062P-201ENST00000383908 107 ntBASIC0.77□□□□□ -2.29
SHHQ15465 Y_RNA.440-201ENST00000384120 114 ntBASIC0.77□□□□□ -2.29
SHHQ15465 MIR802-201ENST00000390235 94 ntBASIC0.77□□□□□ -2.29
SHHQ15465 snoU13.21-201ENST00000459368 105 ntBASIC0.77□□□□□ -2.29
SHHQ15465 RNU6-1258P-201ENST00000516911 111 ntBASIC0.77□□□□□ -2.29
SHHQ15465 IGKV1-22-201ENST00000524313 326 ntBASIC0.77□□□□□ -2.29
SHHQ15465 AP003484.1-201ENST00000530974 250 ntBASIC0.77□□□□□ -2.29
SHHQ15465 MTND1P7-201ENST00000632801 297 ntBASIC0.77□□□□□ -2.29
SHHQ15465 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.76□□□□□ -2.29
SHHQ15465 Y_RNA.241-201ENST00000364470 117 ntBASIC0.76□□□□□ -2.29
SHHQ15465 SNORD24-201ENST00000383884 75 ntBASIC0.76□□□□□ -2.29
SHHQ15465 RNU6-449P-201ENST00000383914 107 ntBASIC0.76□□□□□ -2.29
SHHQ15465 Y_RNA.420-201ENST00000384043 110 ntBASIC0.76□□□□□ -2.29
SHHQ15465 RNY3P5-201ENST00000384127 102 ntBASIC0.76□□□□□ -2.29
SHHQ15465 MT-TI-201ENST00000387365 69 ntBASIC0.76□□□□□ -2.29
SHHQ15465 RNU6-257P-201ENST00000410238 98 ntBASIC0.76□□□□□ -2.29
SHHQ15465 AC107027.2-201ENST00000512197 115 ntBASIC0.76□□□□□ -2.29
SHHQ15465 RNU2-13P-201ENST00000515909 113 ntBASIC0.76□□□□□ -2.29
SHHQ15465 RNU5E-3P-201ENST00000515913 68 ntBASIC0.76□□□□□ -2.29
SHHQ15465 RNA5SP236-201ENST00000516169 116 ntBASIC0.76□□□□□ -2.29
SHHQ15465 SNORD111.1-201ENST00000516421 86 ntBASIC0.76□□□□□ -2.29
SHHQ15465 RNA5SP153-201ENST00000516498 76 ntBASIC0.76□□□□□ -2.29
SHHQ15465 RNU6-504P-201ENST00000516568 104 ntBASIC0.76□□□□□ -2.29
SHHQ15465 RNU11-2P-201ENST00000516898 142 ntBASIC0.76□□□□□ -2.29
SHHQ15465 RNU6-958P-201ENST00000516995 106 ntBASIC0.76□□□□□ -2.29
SHHQ15465 SNORA74.3-201ENST00000517108 154 ntBASIC0.76□□□□□ -2.29
SHHQ15465 AC090049.2-201ENST00000550377 109 ntBASIC0.76□□□□□ -2.29
SHHQ15465 AC112693.2-201ENST00000556538 232 ntBASIC0.76□□□□□ -2.29
SHHQ15465 MIR5688-201ENST00000580619 83 ntBASIC0.76□□□□□ -2.29
SHHQ15465 MIR4764-201ENST00000580680 88 ntBASIC0.76□□□□□ -2.29
SHHQ15465 GHRLOS.1-201ENST00000610995 70 ntBASIC0.76□□□□□ -2.29
SHHQ15465 MIR6844-201ENST00000637122 62 ntBASIC0.76□□□□□ -2.29
SHHQ15465 RNU6-235P-201ENST00000362644 107 ntBASIC0.75□□□□□ -2.29
SHHQ15465 Y_RNA.357-201ENST00000365487 109 ntBASIC0.75□□□□□ -2.29
SHHQ15465 Y_RNA.464-201ENST00000384282 110 ntBASIC0.75□□□□□ -2.29
SHHQ15465 MIR452-201ENST00000385020 85 ntBASIC0.75□□□□□ -2.29
SHHQ15465 MIR136-201ENST00000385207 82 ntBASIC0.75□□□□□ -2.29
SHHQ15465 Y_RNA.580-201ENST00000391004 95 ntBASIC0.75□□□□□ -2.29
SHHQ15465 SNORD37.2-201ENST00000391075 66 ntBASIC0.75□□□□□ -2.29
SHHQ15465 MIR1185-1-201ENST00000408598 86 ntBASIC0.75□□□□□ -2.29
SHHQ15465 RNU2-55P-201ENST00000411146 174 ntBASIC0.75□□□□□ -2.29
SHHQ15465 RNU6-1234P-201ENST00000516877 103 ntBASIC0.75□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms