Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 FAS-AS1.2-201ENST00000620386 170 ntBASIC2.08□□□□□ -2.08
RNF4P78317 RNU4-36P-201ENST00000364294 144 ntBASIC2.07□□□□□ -2.08
RNF4P78317 AC009474.2-201ENST00000451383 136 ntBASIC2.07□□□□□ -2.08
RNF4P78317 RNU6-970P-201ENST00000516312 107 ntBASIC2.07□□□□□ -2.08
RNF4P78317 AC015688.6-201ENST00000577737 104 ntBASIC2.07□□□□□ -2.08
RNF4P78317 MIR4713-201ENST00000582691 75 ntBASIC2.07□□□□□ -2.08
RNF4P78317 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
RNF4P78317 MIR6873-201ENST00000622788 63 ntBASIC2.07□□□□□ -2.08
RNF4P78317 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC2.07□□□□□ -2.08
RNF4P78317 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
RNF4P78317 RNU6-1099P-201ENST00000363533 107 ntBASIC2.06□□□□□ -2.08
RNF4P78317 MIR577-201ENST00000385196 96 ntBASIC2.06□□□□□ -2.08
RNF4P78317 RNU6-679P-201ENST00000391003 106 ntBASIC2.06□□□□□ -2.08
RNF4P78317 RNU6-521P-201ENST00000516663 105 ntBASIC2.06□□□□□ -2.08
RNF4P78317 SNORA77B-201ENST00000578179 125 ntBASIC2.06□□□□□ -2.08
RNF4P78317 MIR4448-201ENST00000584360 86 ntBASIC2.06□□□□□ -2.08
RNF4P78317 FAM71BP1-201ENST00000604431 523 ntBASIC2.06□□□□□ -2.08
RNF4P78317 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.05□□□□□ -2.08
RNF4P78317 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
RNF4P78317 Y_RNA.369-201ENST00000365568 117 ntBASIC2.05□□□□□ -2.08
RNF4P78317 MIR488-201ENST00000365739 83 ntBASIC2.05□□□□□ -2.08
RNF4P78317 RN7SKP223-201ENST00000410582 62 ntBASIC2.05□□□□□ -2.08
RNF4P78317 RNU2-40P-201ENST00000410833 196 ntBASIC2.05□□□□□ -2.08
RNF4P78317 RN7SL429P-201ENST00000479090 223 ntBASIC2.05□□□□□ -2.08
RNF4P78317 RN7SL489P-201ENST00000486185 223 ntBASIC2.05□□□□□ -2.08
RNF4P78317 RN7SL327P-201ENST00000488659 223 ntBASIC2.05□□□□□ -2.08
RNF4P78317 RNA5SP445-201ENST00000515889 115 ntBASIC2.05□□□□□ -2.08
RNF4P78317 RNA5SP200-201ENST00000516360 103 ntBASIC2.05□□□□□ -2.08
RNF4P78317 MIR1273D-201ENST00000577266 86 ntBASIC2.05□□□□□ -2.08
RNF4P78317 MIR4694-201ENST00000578534 80 ntBASIC2.05□□□□□ -2.08
RNF4P78317 MIR3935-201ENST00000583472 104 ntBASIC2.05□□□□□ -2.08
RNF4P78317 MIR3192-201ENST00000584920 77 ntBASIC2.05□□□□□ -2.08
RNF4P78317 AL096861.1-201ENST00000610899 123 ntBASIC2.05□□□□□ -2.08
RNF4P78317 MIR8074-201ENST00000615081 81 ntBASIC2.05□□□□□ -2.08
RNF4P78317 RN7SL853P-201ENST00000617250 223 ntBASIC2.05□□□□□ -2.08
RNF4P78317 MIR8063-201ENST00000621930 81 ntBASIC2.05□□□□□ -2.08
RNF4P78317 MIR6132-201ENST00000622083 109 ntBASIC2.05□□□□□ -2.08
RNF4P78317 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
RNF4P78317 Y_RNA.107-201ENST00000363190 121 ntBASIC2.04□□□□□ -2.08
RNF4P78317 RNU6-832P-201ENST00000363319 107 ntBASIC2.04□□□□□ -2.08
RNF4P78317 Y_RNA.354-201ENST00000365448 111 ntBASIC2.04□□□□□ -2.08
RNF4P78317 SNORA70B-201ENST00000384210 135 ntBASIC2.04□□□□□ -2.08
RNF4P78317 RNU6-49P-201ENST00000384256 107 ntBASIC2.04□□□□□ -2.08
RNF4P78317 RNU6-1237P-201ENST00000384777 107 ntBASIC2.04□□□□□ -2.08
RNF4P78317 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.04□□□□□ -2.08
RNF4P78317 RPL31P63-201ENST00000422565 375 ntBASIC2.04□□□□□ -2.08
RNF4P78317 AC005908.1-201ENST00000468701 347 ntBASIC2.04□□□□□ -2.08
RNF4P78317 SCARNA23-201ENST00000516060 130 ntBASIC2.04□□□□□ -2.08
RNF4P78317 U8.2-201ENST00000363156 134 ntBASIC2.03□□□□□ -2.08
RNF4P78317 RNA5SP48-201ENST00000363969 126 ntBASIC2.03□□□□□ -2.08
RNF4P78317 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.03□□□□□ -2.08
RNF4P78317 MTATP8P2-201ENST00000435212 202 ntBASIC2.03□□□□□ -2.08
RNF4P78317 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
RNF4P78317 RNU6-947P-201ENST00000516264 106 ntBASIC2.03□□□□□ -2.08
RNF4P78317 MIR3945-201ENST00000581853 98 ntBASIC2.03□□□□□ -2.08
RNF4P78317 AL096840.1-201ENST00000603287 93 ntBASIC2.03□□□□□ -2.08
RNF4P78317 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.03□□□□□ -2.08
RNF4P78317 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.03□□□□□ -2.08
RNF4P78317 SNORA25.3-201ENST00000363205 127 ntBASIC2.02□□□□□ -2.09
RNF4P78317 RNU6-1086P-201ENST00000410930 100 ntBASIC2.02□□□□□ -2.09
RNF4P78317 RNU6-795P-201ENST00000516323 103 ntBASIC2.02□□□□□ -2.09
RNF4P78317 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.02□□□□□ -2.09
RNF4P78317 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.01□□□□□ -2.09
RNF4P78317 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.01□□□□□ -2.09
RNF4P78317 RNU6-1201P-201ENST00000384227 107 ntBASIC2.01□□□□□ -2.09
RNF4P78317 SNORD38B-201ENST00000384690 67 ntBASIC2.01□□□□□ -2.09
RNF4P78317 RNY1P7-201ENST00000384743 110 ntBASIC2.01□□□□□ -2.09
RNF4P78317 MIR206-201ENST00000384872 86 ntBASIC2.01□□□□□ -2.09
RNF4P78317 RNU6-1307P-201ENST00000391012 103 ntBASIC2.01□□□□□ -2.09
RNF4P78317 SNORA48.3-201ENST00000391081 134 ntBASIC2.01□□□□□ -2.09
RNF4P78317 RNU1-41P-201ENST00000516161 162 ntBASIC2.01□□□□□ -2.09
RNF4P78317 RNU1-48P-201ENST00000516400 162 ntBASIC2.01□□□□□ -2.09
RNF4P78317 SNORD67.1-201ENST00000516618 108 ntBASIC2.01□□□□□ -2.09
RNF4P78317 RNU7-35P-201ENST00000517174 62 ntBASIC2.01□□□□□ -2.09
RNF4P78317 MIR548Z-201ENST00000584743 97 ntBASIC2.01□□□□□ -2.09
RNF4P78317 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
RNF4P78317 SNORD38B-202ENST00000625943 69 ntBASIC2.01□□□□□ -2.09
RNF4P78317 AL512310.12-203ENST00000640543 90 ntBASIC2.01□□□□□ -2.09
RNF4P78317 Y_RNA.93-201ENST00000363066 109 ntBASIC2□□□□□ -2.09
RNF4P78317 Y_RNA.601-201ENST00000410500 113 ntBASIC2□□□□□ -2.09
RNF4P78317 RNU7-2P-201ENST00000516096 62 ntBASIC2□□□□□ -2.09
RNF4P78317 RNU6-158P-201ENST00000517104 100 ntBASIC2□□□□□ -2.09
RNF4P78317 AC019176.1-201ENST00000518519 225 ntBASIC2□□□□□ -2.09
RNF4P78317 MIR4648-201ENST00000580107 72 ntBASIC2□□□□□ -2.09
RNF4P78317 AL357312.1-201ENST00000603879 298 ntBASIC2□□□□□ -2.09
RNF4P78317 AC103810.8-201ENST00000607347 118 ntBASIC2□□□□□ -2.09
RNF4P78317 AL627230.6-201ENST00000611129 280 ntBASIC2□□□□□ -2.09
RNF4P78317 AC012531.4-201ENST00000616509 177 ntBASIC2□□□□□ -2.09
RNF4P78317 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2□□□□□ -2.09
RNF4P78317 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
RNF4P78317 MIRLET7G-201ENST00000362280 84 ntBASIC1.99□□□□□ -2.09
RNF4P78317 RNU6-294P-201ENST00000364999 102 ntBASIC1.99□□□□□ -2.09
RNF4P78317 HSPE1P24-201ENST00000450782 238 ntBASIC1.99□□□□□ -2.09
RNF4P78317 HMGN2P23-201ENST00000456759 269 ntBASIC1.99□□□□□ -2.09
RNF4P78317 RNU7-79P-201ENST00000516082 62 ntBASIC1.99□□□□□ -2.09
RNF4P78317 RNU6-250P-201ENST00000516958 103 ntBASIC1.99□□□□□ -2.09
RNF4P78317 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC1.99□□□□□ -2.09
RNF4P78317 AC105081.1-201ENST00000617727 106 ntBASIC1.99□□□□□ -2.09
RNF4P78317 uc_338.20-201ENST00000621563 178 ntBASIC1.99□□□□□ -2.09
RNF4P78317 AC091304.10-201ENST00000641554 121 ntBASIC1.99□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 181.5 ms