Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 Z99129.1-201ENST00000612510 255 ntBASIC-0.76□□□□□ -2.53
FOXA3P55318 AC015540.1-201ENST00000615828 501 ntBASIC-0.76□□□□□ -2.53
FOXA3P55318 U2.1-201ENST00000618978 145 ntBASIC-0.76□□□□□ -2.53
FOXA3P55318 MIR367-201ENST00000362299 68 ntBASIC-0.77□□□□□ -2.53
FOXA3P55318 Y_RNA.813-201ENST00000364639 102 ntBASIC-0.77□□□□□ -2.53
FOXA3P55318 SNORD114-29-201ENST00000364819 70 ntBASIC-0.77□□□□□ -2.53
FOXA3P55318 Y_RNA.304-201ENST00000365011 112 ntBASIC-0.77□□□□□ -2.53
FOXA3P55318 Y_RNA.366-201ENST00000365540 102 ntBASIC-0.77□□□□□ -2.53
FOXA3P55318 RNU6-1036P-201ENST00000383959 104 ntBASIC-0.77□□□□□ -2.53
FOXA3P55318 Y_RNA.482-201ENST00000384377 111 ntBASIC-0.77□□□□□ -2.53
FOXA3P55318 RNU4-70P-201ENST00000384579 139 ntBASIC-0.77□□□□□ -2.53
FOXA3P55318 MIR635-201ENST00000384830 98 ntBASIC-0.77□□□□□ -2.53
FOXA3P55318 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC-0.77□□□□□ -2.53
FOXA3P55318 MTND1P14-201ENST00000427400 950 ntBASIC-0.77□□□□□ -2.53
FOXA3P55318 TRAJ51-201ENST00000504127 63 ntBASIC-0.77□□□□□ -2.53
FOXA3P55318 MTCO2P24-201ENST00000515611 426 ntBASIC-0.77□□□□□ -2.53
FOXA3P55318 SNORD38.3-201ENST00000516599 73 ntBASIC-0.77□□□□□ -2.53
FOXA3P55318 RNU7-4P-201ENST00000516961 62 ntBASIC-0.77□□□□□ -2.53
FOXA3P55318 Y_RNA.757-201ENST00000578934 114 ntBASIC-0.77□□□□□ -2.53
FOXA3P55318 YWHAEP2-201ENST00000580066 112 ntBASIC-0.77□□□□□ -2.53
FOXA3P55318 AC108676.2-201ENST00000605225 163 ntBASIC-0.77□□□□□ -2.53
FOXA3P55318 RNU6-86P-201ENST00000606534 107 ntBASIC-0.77□□□□□ -2.53
FOXA3P55318 AC021613.1-201ENST00000623880 111 ntBASIC-0.77□□□□□ -2.53
FOXA3P55318 Y_RNA.323-201ENST00000365157 109 ntBASIC-0.78□□□□□ -2.53
FOXA3P55318 RNU6-449P-201ENST00000383914 107 ntBASIC-0.78□□□□□ -2.53
FOXA3P55318 Y_RNA.454-201ENST00000384224 113 ntBASIC-0.78□□□□□ -2.53
FOXA3P55318 Y_RNA.462-201ENST00000384268 102 ntBASIC-0.78□□□□□ -2.53
FOXA3P55318 RNU6-21P-201ENST00000384710 107 ntBASIC-0.78□□□□□ -2.53
FOXA3P55318 SNORD56B-201ENST00000384713 71 ntBASIC-0.78□□□□□ -2.53
FOXA3P55318 MIR196A1-201ENST00000388006 70 ntBASIC-0.78□□□□□ -2.53
FOXA3P55318 RNU6-1248P-201ENST00000391096 64 ntBASIC-0.78□□□□□ -2.53
FOXA3P55318 Y_RNA.599-201ENST00000410489 109 ntBASIC-0.78□□□□□ -2.53
FOXA3P55318 RNU6-758P-201ENST00000516292 89 ntBASIC-0.78□□□□□ -2.53
FOXA3P55318 Y_RNA.681-201ENST00000516445 113 ntBASIC-0.78□□□□□ -2.53
FOXA3P55318 RNU6-1258P-201ENST00000516911 111 ntBASIC-0.78□□□□□ -2.53
FOXA3P55318 AP003733.2-201ENST00000529409 171 ntBASIC-0.78□□□□□ -2.53
FOXA3P55318 AP000676.1-201ENST00000533307 52 ntBASIC-0.78□□□□□ -2.53
FOXA3P55318 AC145350.1-201ENST00000567426 208 ntBASIC-0.78□□□□□ -2.53
FOXA3P55318 MIR4724-201ENST00000579485 89 ntBASIC-0.78□□□□□ -2.53
FOXA3P55318 MIR4280-201ENST00000582178 76 ntBASIC-0.78□□□□□ -2.53
FOXA3P55318 RN7SKP299-201ENST00000606679 301 ntBASIC-0.78□□□□□ -2.53
FOXA3P55318 Y_RNA.91-201ENST00000363042 107 ntBASIC-0.79□□□□□ -2.54
FOXA3P55318 Y_RNA.293-201ENST00000364908 93 ntBASIC-0.79□□□□□ -2.54
FOXA3P55318 Y_RNA.314-201ENST00000365114 102 ntBASIC-0.79□□□□□ -2.54
FOXA3P55318 MIR539-201ENST00000365690 78 ntBASIC-0.79□□□□□ -2.54
FOXA3P55318 RNU6-1201P-201ENST00000384227 107 ntBASIC-0.79□□□□□ -2.54
FOXA3P55318 AC107399.1-201ENST00000451226 265 ntBASIC-0.79□□□□□ -2.54
FOXA3P55318 RNU7-74P-201ENST00000459104 62 ntBASIC-0.79□□□□□ -2.54
FOXA3P55318 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.79□□□□□ -2.54
FOXA3P55318 RNU6-191P-201ENST00000516295 94 ntBASIC-0.79□□□□□ -2.54
FOXA3P55318 RNU7-13P-201ENST00000516413 62 ntBASIC-0.79□□□□□ -2.54
FOXA3P55318 RNU6-881P-201ENST00000516813 102 ntBASIC-0.79□□□□□ -2.54
FOXA3P55318 MIR3681-201ENST00000580089 72 ntBASIC-0.79□□□□□ -2.54
FOXA3P55318 MIR548AE1-201ENST00000583292 70 ntBASIC-0.79□□□□□ -2.54
FOXA3P55318 AL669831.3-213ENST00000636676 183 ntBASIC-0.79□□□□□ -2.54
FOXA3P55318 Y_RNA.88-201ENST00000363029 99 ntBASIC-0.8□□□□□ -2.54
FOXA3P55318 Y_RNA.171-201ENST00000363760 102 ntBASIC-0.8□□□□□ -2.54
FOXA3P55318 SNORD95.1-201ENST00000364099 68 ntBASIC-0.8□□□□□ -2.54
FOXA3P55318 RNU4-16P-201ENST00000364737 141 ntBASIC-0.8□□□□□ -2.54
FOXA3P55318 Y_RNA.286-201ENST00000364813 102 ntBASIC-0.8□□□□□ -2.54
FOXA3P55318 RNU6-154P-201ENST00000384306 106 ntBASIC-0.8□□□□□ -2.54
FOXA3P55318 RNU6-937P-201ENST00000384325 106 ntBASIC-0.8□□□□□ -2.54
FOXA3P55318 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.8□□□□□ -2.54
FOXA3P55318 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC-0.8□□□□□ -2.54
FOXA3P55318 RPS29P25-201ENST00000481709 171 ntBASIC-0.8□□□□□ -2.54
FOXA3P55318 RNU6-314P-201ENST00000516574 104 ntBASIC-0.8□□□□□ -2.54
FOXA3P55318 RNU7-35P-201ENST00000517174 62 ntBASIC-0.8□□□□□ -2.54
FOXA3P55318 RNU7-10P-201ENST00000607194 63 ntBASIC-0.8□□□□□ -2.54
FOXA3P55318 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC-0.8□□□□□ -2.54
FOXA3P55318 AC013791.1-201ENST00000616619 62 ntBASIC-0.8□□□□□ -2.54
FOXA3P55318 SNORD114-25-201ENST00000363742 72 ntBASIC-0.81□□□□□ -2.54
FOXA3P55318 RNU4-10P-201ENST00000364383 140 ntBASIC-0.81□□□□□ -2.54
FOXA3P55318 Y_RNA.634-201ENST00000364811 113 ntBASIC-0.81□□□□□ -2.54
FOXA3P55318 Y_RNA.339-201ENST00000365325 102 ntBASIC-0.81□□□□□ -2.54
FOXA3P55318 RNY3-201ENST00000365484 102 ntBASIC-0.81□□□□□ -2.54
FOXA3P55318 Y_RNA.380-201ENST00000365663 111 ntBASIC-0.81□□□□□ -2.54
FOXA3P55318 RNU6-429P-201ENST00000384582 108 ntBASIC-0.81□□□□□ -2.54
FOXA3P55318 AL603914.1-201ENST00000401964 204 ntBASIC-0.81□□□□□ -2.54
FOXA3P55318 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC-0.81□□□□□ -2.54
FOXA3P55318 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC-0.81□□□□□ -2.54
FOXA3P55318 NDUFAF4P4-201ENST00000454883 502 ntBASIC-0.81□□□□□ -2.54
FOXA3P55318 MRPS35P2-201ENST00000508242 191 ntBASIC-0.81□□□□□ -2.54
FOXA3P55318 Y_RNA.655-201ENST00000515919 96 ntBASIC-0.81□□□□□ -2.54
FOXA3P55318 RNU6-764P-201ENST00000516396 105 ntBASIC-0.81□□□□□ -2.54
FOXA3P55318 RNU6-126P-201ENST00000516685 103 ntBASIC-0.81□□□□□ -2.54
FOXA3P55318 RNU5B-6P-201ENST00000516765 68 ntBASIC-0.81□□□□□ -2.54
FOXA3P55318 AC109635.3-201ENST00000529536 185 ntBASIC-0.81□□□□□ -2.54
FOXA3P55318 Y_RNA.772-201ENST00000606692 102 ntBASIC-0.81□□□□□ -2.54
FOXA3P55318 AC069503.3-201ENST00000618674 145 ntBASIC-0.81□□□□□ -2.54
FOXA3P55318 AC138305.3-201ENST00000624988 240 ntBASIC-0.81□□□□□ -2.54
FOXA3P55318 Y_RNA.157-201ENST00000363638 102 ntBASIC-0.82□□□□□ -2.54
FOXA3P55318 SNORA32-201ENST00000384072 121 ntBASIC-0.82□□□□□ -2.54
FOXA3P55318 Y_RNA.470-201ENST00000384307 117 ntBASIC-0.82□□□□□ -2.54
FOXA3P55318 RNU6-900P-201ENST00000384498 102 ntBASIC-0.82□□□□□ -2.54
FOXA3P55318 SNORD83B-201ENST00000386745 93 ntBASIC-0.82□□□□□ -2.54
FOXA3P55318 SPINT5P-201ENST00000448174 155 ntBASIC-0.82□□□□□ -2.54
FOXA3P55318 AC097635.1-201ENST00000450678 155 ntBASIC-0.82□□□□□ -2.54
FOXA3P55318 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC-0.82□□□□□ -2.54
FOXA3P55318 AC074198.2-201ENST00000508153 258 ntBASIC-0.82□□□□□ -2.54
FOXA3P55318 RNU6-911P-201ENST00000516523 104 ntBASIC-0.82□□□□□ -2.54
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms