Protein–RNA interactions for Protein: P49754

VPS41, Vacuolar protein sorting-associated protein 41 homolog, humanhuman

Predictions only

Length 854 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41P49754 RNU6-959P-201ENST00000384671 107 ntBASIC1.35□□□□□ -2.19
VPS41P49754 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.35□□□□□ -2.19
VPS41P49754 AC245047.7-201ENST00000440265 293 ntBASIC1.35□□□□□ -2.19
VPS41P49754 RNU1-123P-201ENST00000458950 160 ntBASIC1.35□□□□□ -2.19
VPS41P49754 AC048334.1-201ENST00000477975 159 ntBASIC1.35□□□□□ -2.19
VPS41P49754 RNU6-240P-201ENST00000516098 97 ntBASIC1.35□□□□□ -2.19
VPS41P49754 RNU1-92P-201ENST00000517017 135 ntBASIC1.35□□□□□ -2.19
VPS41P49754 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.34□□□□□ -2.19
VPS41P49754 Y_RNA.366-201ENST00000365540 102 ntBASIC1.34□□□□□ -2.19
VPS41P49754 Y_RNA.430-201ENST00000384081 110 ntBASIC1.34□□□□□ -2.19
VPS41P49754 Y_RNA.617-201ENST00000410920 90 ntBASIC1.34□□□□□ -2.19
VPS41P49754 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.34□□□□□ -2.19
VPS41P49754 POLR2J4-204ENST00000418424 324 ntBASIC1.34□□□□□ -2.19
VPS41P49754 RNU6-1211P-201ENST00000459179 105 ntBASIC1.34□□□□□ -2.19
VPS41P49754 RNU6-789P-201ENST00000517105 102 ntBASIC1.34□□□□□ -2.19
VPS41P49754 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.33□□□□□ -2.2
VPS41P49754 RNA5SP99-201ENST00000364020 114 ntBASIC1.33□□□□□ -2.2
VPS41P49754 RNU6-647P-201ENST00000364243 107 ntBASIC1.33□□□□□ -2.2
VPS41P49754 RNU4-16P-201ENST00000364737 141 ntBASIC1.33□□□□□ -2.2
VPS41P49754 RNU6-690P-201ENST00000365242 106 ntBASIC1.33□□□□□ -2.2
VPS41P49754 Y_RNA.363-201ENST00000365529 113 ntBASIC1.33□□□□□ -2.2
VPS41P49754 RNU6-939P-201ENST00000384634 107 ntBASIC1.33□□□□□ -2.2
VPS41P49754 RNA5SP144-201ENST00000410846 116 ntBASIC1.33□□□□□ -2.2
VPS41P49754 RNU5E-3P-201ENST00000515913 68 ntBASIC1.33□□□□□ -2.2
VPS41P49754 AC019288.1-201ENST00000557918 224 ntBASIC1.33□□□□□ -2.2
VPS41P49754 RNU6-602P-201ENST00000411155 105 ntBASIC1.32□□□□□ -2.2
VPS41P49754 AC004223.1-201ENST00000479840 271 ntBASIC1.32□□□□□ -2.2
VPS41P49754 RN7SKP19-201ENST00000516016 252 ntBASIC1.32□□□□□ -2.2
VPS41P49754 SNORA31.2-201ENST00000516019 134 ntBASIC1.32□□□□□ -2.2
VPS41P49754 RNU6-1258P-201ENST00000516911 111 ntBASIC1.32□□□□□ -2.2
VPS41P49754 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.32□□□□□ -2.2
VPS41P49754 AL157777.2-201ENST00000258070 137 ntBASIC1.31□□□□□ -2.2
VPS41P49754 MIR103A2-201ENST00000362154 78 ntBASIC1.31□□□□□ -2.2
VPS41P49754 RNU6-235P-201ENST00000362644 107 ntBASIC1.31□□□□□ -2.2
VPS41P49754 Y_RNA.71-201ENST00000362892 104 ntBASIC1.31□□□□□ -2.2
VPS41P49754 SNORA1.1-201ENST00000364671 133 ntBASIC1.31□□□□□ -2.2
VPS41P49754 RNU6-80P-201ENST00000384195 107 ntBASIC1.31□□□□□ -2.2
VPS41P49754 RNA5SP261-201ENST00000410536 106 ntBASIC1.31□□□□□ -2.2
VPS41P49754 AC244023.1-201ENST00000426884 112 ntBASIC1.31□□□□□ -2.2
VPS41P49754 RNU2-35P-201ENST00000516446 142 ntBASIC1.31□□□□□ -2.2
VPS41P49754 RNU6-1234P-201ENST00000516877 103 ntBASIC1.31□□□□□ -2.2
VPS41P49754 RNU11-2P-201ENST00000516898 142 ntBASIC1.31□□□□□ -2.2
VPS41P49754 AC133485.4-201ENST00000561835 220 ntBASIC1.31□□□□□ -2.2
VPS41P49754 AC138907.4-201ENST00000570107 226 ntBASIC1.31□□□□□ -2.2
VPS41P49754 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC1.31□□□□□ -2.2
VPS41P49754 MIR4305-201ENST00000583252 102 ntBASIC1.31□□□□□ -2.2
VPS41P49754 AC242498.1-201ENST00000604134 111 ntBASIC1.31□□□□□ -2.2
VPS41P49754 AL512598.1-201ENST00000610158 273 ntBASIC1.31□□□□□ -2.2
VPS41P49754 AL137067.1-201ENST00000615933 120 ntBASIC1.31□□□□□ -2.2
VPS41P49754 MIR8065-201ENST00000620577 100 ntBASIC1.31□□□□□ -2.2
VPS41P49754 MIR6516-201ENST00000630554 81 ntBASIC1.31□□□□□ -2.2
VPS41P49754 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.31□□□□□ -2.2
VPS41P49754 ZNF209P-201ENST00000593450 2304 ntBASIC1.31□□□□□ -2.2
VPS41P49754 Y_RNA.140-201ENST00000363474 103 ntBASIC1.3□□□□□ -2.2
VPS41P49754 MIRLET7F2-201ENST00000385277 83 ntBASIC1.3□□□□□ -2.2
VPS41P49754 MIR618-201ENST00000385287 98 ntBASIC1.3□□□□□ -2.2
VPS41P49754 RPS3AP1-201ENST00000413190 320 ntBASIC1.3□□□□□ -2.2
VPS41P49754 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.3□□□□□ -2.2
VPS41P49754 MIR3152-201ENST00000579801 74 ntBASIC1.3□□□□□ -2.2
VPS41P49754 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.3□□□□□ -2.2
VPS41P49754 SNORA22.1-201ENST00000362701 134 ntBASIC1.29□□□□□ -2.2
VPS41P49754 RNU7-107P-201ENST00000459121 61 ntBASIC1.29□□□□□ -2.2
VPS41P49754 RNU6-781P-201ENST00000516377 101 ntBASIC1.29□□□□□ -2.2
VPS41P49754 AC021443.1-201ENST00000604478 211 ntBASIC1.29□□□□□ -2.2
VPS41P49754 Y_RNA.298-201ENST00000364960 107 ntBASIC1.28□□□□□ -2.2
VPS41P49754 RNU6-396P-201ENST00000365369 105 ntBASIC1.28□□□□□ -2.2
VPS41P49754 SNORD116-14-201ENST00000383894 92 ntBASIC1.28□□□□□ -2.2
VPS41P49754 SNORD116-17-201ENST00000383929 92 ntBASIC1.28□□□□□ -2.2
VPS41P49754 SNORD116-15-201ENST00000384445 92 ntBASIC1.28□□□□□ -2.2
VPS41P49754 SNORD116-19-201ENST00000384729 92 ntBASIC1.28□□□□□ -2.2
VPS41P49754 SNORA75.2-201ENST00000391138 150 ntBASIC1.28□□□□□ -2.2
VPS41P49754 SNORA75.3-201ENST00000391231 150 ntBASIC1.28□□□□□ -2.2
VPS41P49754 RNU6-613P-201ENST00000410412 108 ntBASIC1.28□□□□□ -2.2
VPS41P49754 RNU7-123P-201ENST00000515911 60 ntBASIC1.28□□□□□ -2.2
VPS41P49754 RNU6-659P-201ENST00000516454 104 ntBASIC1.28□□□□□ -2.2
VPS41P49754 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.28□□□□□ -2.2
VPS41P49754 RNA5SP327-201ENST00000362494 101 ntBASIC1.27□□□□□ -2.21
VPS41P49754 Y_RNA.171-201ENST00000363760 102 ntBASIC1.27□□□□□ -2.21
VPS41P49754 RNU6-654P-201ENST00000364373 107 ntBASIC1.27□□□□□ -2.21
VPS41P49754 SNORD58C-201ENST00000365223 64 ntBASIC1.27□□□□□ -2.21
VPS41P49754 Y_RNA.525-201ENST00000384570 113 ntBASIC1.27□□□□□ -2.21
VPS41P49754 SNORD38B-201ENST00000384690 67 ntBASIC1.27□□□□□ -2.21
VPS41P49754 MT-TN-201ENST00000387400 73 ntBASIC1.27□□□□□ -2.21
VPS41P49754 SNORA17.3-201ENST00000391159 129 ntBASIC1.27□□□□□ -2.21
VPS41P49754 RNU7-164P-201ENST00000459221 62 ntBASIC1.27□□□□□ -2.21
VPS41P49754 RNU6-772P-201ENST00000516042 105 ntBASIC1.27□□□□□ -2.21
VPS41P49754 MIR2115-201ENST00000516657 100 ntBASIC1.27□□□□□ -2.21
VPS41P49754 RNY4P20-201ENST00000516678 93 ntBASIC1.27□□□□□ -2.21
VPS41P49754 Y_RNA.712-201ENST00000517011 92 ntBASIC1.27□□□□□ -2.21
VPS41P49754 SNORD38B-202ENST00000625943 69 ntBASIC1.27□□□□□ -2.21
VPS41P49754 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.27□□□□□ -2.21
VPS41P49754 SNORD115-2-201ENST00000362842 82 ntBASIC1.26□□□□□ -2.21
VPS41P49754 Y_RNA.127-201ENST00000363386 109 ntBASIC1.26□□□□□ -2.21
VPS41P49754 SNORA25.8-201ENST00000364831 128 ntBASIC1.26□□□□□ -2.21
VPS41P49754 SNORD115-20-201ENST00000365099 82 ntBASIC1.26□□□□□ -2.21
VPS41P49754 RNU6-910P-201ENST00000390844 107 ntBASIC1.26□□□□□ -2.21
VPS41P49754 SNORA40.6-201ENST00000391153 128 ntBASIC1.26□□□□□ -2.21
VPS41P49754 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.26□□□□□ -2.21
VPS41P49754 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.26□□□□□ -2.21
VPS41P49754 RNU4-62P-201ENST00000410125 130 ntBASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 133.4 ms