Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.53□□□□□ -2
RFX1P22670 RNU6-1239P-201ENST00000391310 107 ntBASIC2.53□□□□□ -2
RFX1P22670 MIR1912-201ENST00000410389 80 ntBASIC2.53□□□□□ -2
RFX1P22670 snoU13.9-201ENST00000458927 103 ntBASIC2.53□□□□□ -2
RFX1P22670 RPL23AP42-201ENST00000471152 471 ntBASIC2.53□□□□□ -2
RFX1P22670 AC026436.1-201ENST00000510537 270 ntBASIC2.53□□□□□ -2
RFX1P22670 SNORD111.1-201ENST00000516421 86 ntBASIC2.53□□□□□ -2
RFX1P22670 RNU6-537P-201ENST00000517277 103 ntBASIC2.53□□□□□ -2
RFX1P22670 MIR3618-201ENST00000580330 88 ntBASIC2.53□□□□□ -2
RFX1P22670 Y_RNA.773-201ENST00000607168 90 ntBASIC2.53□□□□□ -2
RFX1P22670 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.53□□□□□ -2
RFX1P22670 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
RFX1P22670 WWP1P1-201ENST00000466609 2769 ntBASIC2.52□□□□□ -2.01
RFX1P22670 RNU6-1113P-201ENST00000384348 107 ntBASIC2.52□□□□□ -2.01
RFX1P22670 SNORA67.3-201ENST00000384366 140 ntBASIC2.52□□□□□ -2.01
RFX1P22670 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.52□□□□□ -2.01
RFX1P22670 RPL39P25-201ENST00000449384 154 ntBASIC2.52□□□□□ -2.01
RFX1P22670 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC2.52□□□□□ -2.01
RFX1P22670 AL137847.3-201ENST00000611521 109 ntBASIC2.52□□□□□ -2.01
RFX1P22670 AL596028.1-201ENST00000326971 197 ntBASIC2.51□□□□□ -2.01
RFX1P22670 Y_RNA.338-201ENST00000365320 114 ntBASIC2.51□□□□□ -2.01
RFX1P22670 Y_RNA.369-201ENST00000365568 117 ntBASIC2.51□□□□□ -2.01
RFX1P22670 RNY4P30-201ENST00000410216 95 ntBASIC2.51□□□□□ -2.01
RFX1P22670 HSPE1P24-201ENST00000450782 238 ntBASIC2.51□□□□□ -2.01
RFX1P22670 HMGN2P23-201ENST00000456759 269 ntBASIC2.51□□□□□ -2.01
RFX1P22670 RPS27P21-201ENST00000486977 252 ntBASIC2.51□□□□□ -2.01
RFX1P22670 AL096840.1-201ENST00000603287 93 ntBASIC2.51□□□□□ -2.01
RFX1P22670 MIR6840-201ENST00000611937 71 ntBASIC2.51□□□□□ -2.01
RFX1P22670 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.5□□□□□ -2.01
RFX1P22670 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.5□□□□□ -2.01
RFX1P22670 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC2.5□□□□□ -2.01
RFX1P22670 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
RFX1P22670 RNU6-602P-201ENST00000411155 105 ntBASIC2.5□□□□□ -2.01
RFX1P22670 MIR1270-201ENST00000459320 83 ntBASIC2.5□□□□□ -2.01
RFX1P22670 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.5□□□□□ -2.01
RFX1P22670 MIR3198-2-201ENST00000577868 80 ntBASIC2.5□□□□□ -2.01
RFX1P22670 MIR8065-201ENST00000620577 100 ntBASIC2.5□□□□□ -2.01
RFX1P22670 MIR6766-201ENST00000622641 72 ntBASIC2.5□□□□□ -2.01
RFX1P22670 MIR1255B1-201ENST00000636325 63 ntBASIC2.5□□□□□ -2.01
RFX1P22670 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
RFX1P22670 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
RFX1P22670 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.49□□□□□ -2.01
RFX1P22670 RNU6-363P-201ENST00000362895 105 ntBASIC2.49□□□□□ -2.01
RFX1P22670 Y_RNA.140-201ENST00000363474 103 ntBASIC2.49□□□□□ -2.01
RFX1P22670 SNORD1A-201ENST00000364968 72 ntBASIC2.49□□□□□ -2.01
RFX1P22670 Y_RNA.507-201ENST00000384500 99 ntBASIC2.49□□□□□ -2.01
RFX1P22670 SNORD77B-201ENST00000391112 67 ntBASIC2.49□□□□□ -2.01
RFX1P22670 ATP6V0E1P1-201ENST00000412537 226 ntBASIC2.49□□□□□ -2.01
RFX1P22670 AC009474.2-201ENST00000451383 136 ntBASIC2.49□□□□□ -2.01
RFX1P22670 CYP3A52P-201ENST00000563326 91 ntBASIC2.49□□□□□ -2.01
RFX1P22670 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.49□□□□□ -2.01
RFX1P22670 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
RFX1P22670 Y_RNA.78-201ENST00000362970 110 ntBASIC2.48□□□□□ -2.01
RFX1P22670 RNU6-905P-201ENST00000384434 107 ntBASIC2.48□□□□□ -2.01
RFX1P22670 AL603825.1-201ENST00000438481 80 ntBASIC2.48□□□□□ -2.01
RFX1P22670 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.48□□□□□ -2.01
RFX1P22670 MIR3192-201ENST00000584920 77 ntBASIC2.48□□□□□ -2.01
RFX1P22670 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
RFX1P22670 Y_RNA.348-201ENST00000365403 103 ntBASIC2.47□□□□□ -2.01
RFX1P22670 AC090844.1-201ENST00000422019 156 ntBASIC2.47□□□□□ -2.01
RFX1P22670 AC245047.7-201ENST00000440265 293 ntBASIC2.47□□□□□ -2.01
RFX1P22670 AC121758.2-201ENST00000553271 193 ntBASIC2.47□□□□□ -2.01
RFX1P22670 AL096861.1-201ENST00000610899 123 ntBASIC2.47□□□□□ -2.01
RFX1P22670 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.46□□□□□ -2.02
RFX1P22670 MIRLET7G-201ENST00000362280 84 ntBASIC2.46□□□□□ -2.02
RFX1P22670 Y_RNA.164-201ENST00000363709 102 ntBASIC2.46□□□□□ -2.02
RFX1P22670 SNORA32-201ENST00000384072 121 ntBASIC2.46□□□□□ -2.02
RFX1P22670 RNU6-616P-201ENST00000384353 107 ntBASIC2.46□□□□□ -2.02
RFX1P22670 SNORD38B-201ENST00000384690 67 ntBASIC2.46□□□□□ -2.02
RFX1P22670 MIR144-201ENST00000384886 86 ntBASIC2.46□□□□□ -2.02
RFX1P22670 AC079140.2-201ENST00000506193 142 ntBASIC2.46□□□□□ -2.02
RFX1P22670 AC046143.2-201ENST00000609789 160 ntBASIC2.46□□□□□ -2.02
RFX1P22670 SNORD38B-202ENST00000625943 69 ntBASIC2.46□□□□□ -2.02
RFX1P22670 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.46□□□□□ -2.02
RFX1P22670 RNU6-640P-201ENST00000363693 105 ntBASIC2.45□□□□□ -2.02
RFX1P22670 RNU4-67P-201ENST00000364569 141 ntBASIC2.45□□□□□ -2.02
RFX1P22670 AC019129.1-201ENST00000403786 261 ntBASIC2.45□□□□□ -2.02
RFX1P22670 AL133373.1-201ENST00000497098 94 ntBASIC2.45□□□□□ -2.02
RFX1P22670 AP001318.4-201ENST00000616637 121 ntBASIC2.45□□□□□ -2.02
RFX1P22670 MIR8063-201ENST00000621930 81 ntBASIC2.45□□□□□ -2.02
RFX1P22670 Y_RNA.155-201ENST00000363632 101 ntBASIC2.44□□□□□ -2.02
RFX1P22670 RNU6-409P-201ENST00000384114 104 ntBASIC2.44□□□□□ -2.02
RFX1P22670 RNU6-342P-201ENST00000384521 104 ntBASIC2.44□□□□□ -2.02
RFX1P22670 MIR590-201ENST00000385008 97 ntBASIC2.44□□□□□ -2.02
RFX1P22670 RPL39P39-201ENST00000455840 151 ntBASIC2.44□□□□□ -2.02
RFX1P22670 AC005908.1-201ENST00000468701 347 ntBASIC2.44□□□□□ -2.02
RFX1P22670 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.44□□□□□ -2.02
RFX1P22670 SNORA18-201ENST00000384416 132 ntBASIC2.43□□□□□ -2.02
RFX1P22670 Y_RNA.544-201ENST00000384650 113 ntBASIC2.43□□□□□ -2.02
RFX1P22670 SNORA48.3-201ENST00000391081 134 ntBASIC2.43□□□□□ -2.02
RFX1P22670 SNORA19.1-201ENST00000410656 129 ntBASIC2.43□□□□□ -2.02
RFX1P22670 RNU6-733P-201ENST00000410759 104 ntBASIC2.43□□□□□ -2.02
RFX1P22670 RPL30P7-201ENST00000479312 323 ntBASIC2.43□□□□□ -2.02
RFX1P22670 RNU6-904P-201ENST00000516206 101 ntBASIC2.43□□□□□ -2.02
RFX1P22670 RNU7-35P-201ENST00000517174 62 ntBASIC2.43□□□□□ -2.02
RFX1P22670 PRELID3BP2-201ENST00000605362 201 ntBASIC2.43□□□□□ -2.02
RFX1P22670 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.43□□□□□ -2.02
RFX1P22670 AC131280.1-202ENST00000624067 4211 ntBASIC2.43□□□□□ -2.02
RFX1P22670 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.43□□□□□ -2.02
RFX1P22670 RNU6-1065P-201ENST00000384513 106 ntBASIC2.42□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms