Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 AP001340.1-201ENST00000624405 217 ntBASIC1.61□□□□□ -2.15
PCDHA1Q9Y5I3 SNORA51.10-201ENST00000384418 136 ntBASIC1.6□□□□□ -2.15
PCDHA1Q9Y5I3 AL035398.1-201ENST00000430869 322 ntBASIC1.6□□□□□ -2.15
PCDHA1Q9Y5I3 MTATP6P21-201ENST00000440681 189 ntBASIC1.6□□□□□ -2.15
PCDHA1Q9Y5I3 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.6□□□□□ -2.15
PCDHA1Q9Y5I3 RNU7-41P-201ENST00000515917 61 ntBASIC1.6□□□□□ -2.15
PCDHA1Q9Y5I3 SNORA25.12-201ENST00000516202 82 ntBASIC1.6□□□□□ -2.15
PCDHA1Q9Y5I3 RNU6-970P-201ENST00000516312 107 ntBASIC1.6□□□□□ -2.15
PCDHA1Q9Y5I3 RNU6-165P-201ENST00000517170 99 ntBASIC1.6□□□□□ -2.15
PCDHA1Q9Y5I3 MIR3192-201ENST00000584920 77 ntBASIC1.6□□□□□ -2.15
PCDHA1Q9Y5I3 MIR337-201ENST00000362281 93 ntBASIC1.59□□□□□ -2.15
PCDHA1Q9Y5I3 RNU6-774P-201ENST00000363238 107 ntBASIC1.59□□□□□ -2.15
PCDHA1Q9Y5I3 RNA5SP48-201ENST00000363969 126 ntBASIC1.59□□□□□ -2.15
PCDHA1Q9Y5I3 Y_RNA.568-201ENST00000384742 113 ntBASIC1.59□□□□□ -2.15
PCDHA1Q9Y5I3 MIR570-201ENST00000384917 97 ntBASIC1.59□□□□□ -2.15
PCDHA1Q9Y5I3 RNU7-73P-201ENST00000458743 63 ntBASIC1.59□□□□□ -2.15
PCDHA1Q9Y5I3 RNU7-67P-201ENST00000459003 62 ntBASIC1.59□□□□□ -2.15
PCDHA1Q9Y5I3 AL133373.1-201ENST00000497098 94 ntBASIC1.59□□□□□ -2.15
PCDHA1Q9Y5I3 RNU7-53P-201ENST00000516705 60 ntBASIC1.59□□□□□ -2.15
PCDHA1Q9Y5I3 RNU2-60P-201ENST00000517290 128 ntBASIC1.59□□□□□ -2.15
PCDHA1Q9Y5I3 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.59□□□□□ -2.16
PCDHA1Q9Y5I3 Y_RNA.327-201ENST00000365201 102 ntBASIC1.58□□□□□ -2.16
PCDHA1Q9Y5I3 SNORD18B-201ENST00000365659 72 ntBASIC1.58□□□□□ -2.16
PCDHA1Q9Y5I3 MIR613-201ENST00000385248 95 ntBASIC1.58□□□□□ -2.16
PCDHA1Q9Y5I3 AL603914.1-201ENST00000401964 204 ntBASIC1.58□□□□□ -2.16
PCDHA1Q9Y5I3 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1.58□□□□□ -2.16
PCDHA1Q9Y5I3 snoU13.16-201ENST00000459350 104 ntBASIC1.58□□□□□ -2.16
PCDHA1Q9Y5I3 AL157834.3-201ENST00000615543 103 ntBASIC1.58□□□□□ -2.16
PCDHA1Q9Y5I3 MIR4251-201ENST00000635819 61 ntBASIC1.58□□□□□ -2.16
PCDHA1Q9Y5I3 RNY1P10-201ENST00000363268 113 ntBASIC1.57□□□□□ -2.16
PCDHA1Q9Y5I3 RNU6-460P-201ENST00000391158 108 ntBASIC1.57□□□□□ -2.16
PCDHA1Q9Y5I3 RNU6-1054P-201ENST00000411293 104 ntBASIC1.57□□□□□ -2.16
PCDHA1Q9Y5I3 AL392103.1-201ENST00000447000 198 ntBASIC1.57□□□□□ -2.16
PCDHA1Q9Y5I3 RNU6-947P-201ENST00000516264 106 ntBASIC1.57□□□□□ -2.16
PCDHA1Q9Y5I3 RNU6-426P-201ENST00000516464 97 ntBASIC1.57□□□□□ -2.16
PCDHA1Q9Y5I3 RNU7-70P-201ENST00000516941 66 ntBASIC1.57□□□□□ -2.16
PCDHA1Q9Y5I3 RNU6-958P-201ENST00000516995 106 ntBASIC1.57□□□□□ -2.16
PCDHA1Q9Y5I3 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1.57□□□□□ -2.16
PCDHA1Q9Y5I3 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.57□□□□□ -2.16
PCDHA1Q9Y5I3 AC091932.4-201ENST00000623386 200 ntBASIC1.57□□□□□ -2.16
PCDHA1Q9Y5I3 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
PCDHA1Q9Y5I3 Y_RNA.420-201ENST00000384043 110 ntBASIC1.56□□□□□ -2.16
PCDHA1Q9Y5I3 RNU6-997P-201ENST00000384725 107 ntBASIC1.56□□□□□ -2.16
PCDHA1Q9Y5I3 RNU2-11P-201ENST00000459191 187 ntBASIC1.56□□□□□ -2.16
PCDHA1Q9Y5I3 AP003716.2-201ENST00000528260 108 ntBASIC1.56□□□□□ -2.16
PCDHA1Q9Y5I3 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.56□□□□□ -2.16
PCDHA1Q9Y5I3 AL353770.2-201ENST00000620024 78 ntBASIC1.56□□□□□ -2.16
PCDHA1Q9Y5I3 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.56□□□□□ -2.16
PCDHA1Q9Y5I3 AC010332.2-201ENST00000613083 1904 ntBASIC1.56□□□□□ -2.16
PCDHA1Q9Y5I3 RNU1-133P-201ENST00000364867 167 ntBASIC1.55□□□□□ -2.16
PCDHA1Q9Y5I3 snoU13.25-201ENST00000458945 104 ntBASIC1.55□□□□□ -2.16
PCDHA1Q9Y5I3 RN7SKP88-201ENST00000516847 250 ntBASIC1.55□□□□□ -2.16
PCDHA1Q9Y5I3 AP001328.1-201ENST00000528550 176 ntBASIC1.55□□□□□ -2.16
PCDHA1Q9Y5I3 7SK.8-201ENST00000612110 250 ntBASIC1.55□□□□□ -2.16
PCDHA1Q9Y5I3 7SK.11-201ENST00000615477 250 ntBASIC1.55□□□□□ -2.16
PCDHA1Q9Y5I3 7SK.13-201ENST00000622040 250 ntBASIC1.55□□□□□ -2.16
PCDHA1Q9Y5I3 RNU6-915P-201ENST00000364943 103 ntBASIC1.54□□□□□ -2.16
PCDHA1Q9Y5I3 RNU6-187P-201ENST00000384139 106 ntBASIC1.54□□□□□ -2.16
PCDHA1Q9Y5I3 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.54□□□□□ -2.16
PCDHA1Q9Y5I3 RNU1-123P-201ENST00000458950 160 ntBASIC1.54□□□□□ -2.16
PCDHA1Q9Y5I3 RNU1-98P-201ENST00000458992 160 ntBASIC1.54□□□□□ -2.16
PCDHA1Q9Y5I3 RNA5SP61-201ENST00000516453 100 ntBASIC1.54□□□□□ -2.16
PCDHA1Q9Y5I3 Y_RNA.686-201ENST00000516548 134 ntBASIC1.54□□□□□ -2.16
PCDHA1Q9Y5I3 RNU6-113P-201ENST00000516653 101 ntBASIC1.54□□□□□ -2.16
PCDHA1Q9Y5I3 CYP3A52P-201ENST00000563326 91 ntBASIC1.54□□□□□ -2.16
PCDHA1Q9Y5I3 MIR8055-201ENST00000610739 97 ntBASIC1.54□□□□□ -2.16
PCDHA1Q9Y5I3 AC011603.4-201ENST00000611325 277 ntBASIC1.54□□□□□ -2.16
PCDHA1Q9Y5I3 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
PCDHA1Q9Y5I3 MIR302B-201ENST00000362188 73 ntBASIC1.53□□□□□ -2.16
PCDHA1Q9Y5I3 MIR342-201ENST00000362212 99 ntBASIC1.53□□□□□ -2.16
PCDHA1Q9Y5I3 RNU6-704P-201ENST00000364162 103 ntBASIC1.53□□□□□ -2.16
PCDHA1Q9Y5I3 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.53□□□□□ -2.16
PCDHA1Q9Y5I3 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.53□□□□□ -2.16
PCDHA1Q9Y5I3 SNORA31.4-201ENST00000516049 129 ntBASIC1.53□□□□□ -2.16
PCDHA1Q9Y5I3 Y_RNA.690-201ENST00000516603 95 ntBASIC1.53□□□□□ -2.16
PCDHA1Q9Y5I3 MIR3121-201ENST00000579680 77 ntBASIC1.53□□□□□ -2.16
PCDHA1Q9Y5I3 PRELID3BP2-201ENST00000605362 201 ntBASIC1.53□□□□□ -2.16
PCDHA1Q9Y5I3 AL596211.1-201ENST00000569873 2277 ntBASIC1.52□□□□□ -2.17
PCDHA1Q9Y5I3 RNU6-309P-201ENST00000364573 106 ntBASIC1.52□□□□□ -2.17
PCDHA1Q9Y5I3 RNU6-392P-201ENST00000364926 101 ntBASIC1.52□□□□□ -2.17
PCDHA1Q9Y5I3 SNORA40-201ENST00000388090 126 ntBASIC1.52□□□□□ -2.17
PCDHA1Q9Y5I3 RNU6-913P-201ENST00000390913 95 ntBASIC1.52□□□□□ -2.17
PCDHA1Q9Y5I3 Y_RNA.692-201ENST00000516627 105 ntBASIC1.52□□□□□ -2.17
PCDHA1Q9Y5I3 MIR548AO-201ENST00000579992 96 ntBASIC1.52□□□□□ -2.17
PCDHA1Q9Y5I3 AL020996.3-201ENST00000606617 222 ntBASIC1.52□□□□□ -2.17
PCDHA1Q9Y5I3 RNU6-349P-201ENST00000362402 107 ntBASIC1.51□□□□□ -2.17
PCDHA1Q9Y5I3 SNORA20-201ENST00000384662 132 ntBASIC1.51□□□□□ -2.17
PCDHA1Q9Y5I3 RNU6-257P-201ENST00000410238 98 ntBASIC1.51□□□□□ -2.17
PCDHA1Q9Y5I3 RNA5SP261-201ENST00000410536 106 ntBASIC1.51□□□□□ -2.17
PCDHA1Q9Y5I3 MTND4LP9-201ENST00000427694 174 ntBASIC1.51□□□□□ -2.17
PCDHA1Q9Y5I3 AC245047.7-201ENST00000440265 293 ntBASIC1.51□□□□□ -2.17
PCDHA1Q9Y5I3 Y_RNA.651-201ENST00000459380 103 ntBASIC1.51□□□□□ -2.17
PCDHA1Q9Y5I3 AC004223.1-201ENST00000479840 271 ntBASIC1.51□□□□□ -2.17
PCDHA1Q9Y5I3 RNA5SP272-201ENST00000516095 111 ntBASIC1.51□□□□□ -2.17
PCDHA1Q9Y5I3 RNU11-2P-201ENST00000516898 142 ntBASIC1.51□□□□□ -2.17
PCDHA1Q9Y5I3 AP001485.1-201ENST00000604799 199 ntBASIC1.51□□□□□ -2.17
PCDHA1Q9Y5I3 AL022345.2-201ENST00000606307 135 ntBASIC1.51□□□□□ -2.17
PCDHA1Q9Y5I3 U7.2-201ENST00000607576 63 ntBASIC1.51□□□□□ -2.17
PCDHA1Q9Y5I3 TUG1_4.1-201ENST00000619464 181 ntBASIC1.51□□□□□ -2.17
PCDHA1Q9Y5I3 RNA5SP264-201ENST00000363115 107 ntBASIC1.5□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms