Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 RNU6-1228P-201ENST00000391014 107 ntBASIC0.72□□□□□ -2.29
PCDHGA1Q9Y5H4 MIR1827-201ENST00000408549 66 ntBASIC0.72□□□□□ -2.29
PCDHGA1Q9Y5H4 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.72□□□□□ -2.29
PCDHGA1Q9Y5H4 RNU7-73P-201ENST00000458743 63 ntBASIC0.72□□□□□ -2.29
PCDHGA1Q9Y5H4 Y_RNA.679-201ENST00000516416 91 ntBASIC0.72□□□□□ -2.29
PCDHGA1Q9Y5H4 RNU6-1270P-201ENST00000517128 108 ntBASIC0.72□□□□□ -2.29
PCDHGA1Q9Y5H4 AP000753.3-201ENST00000604083 169 ntBASIC0.72□□□□□ -2.29
PCDHGA1Q9Y5H4 MIR8055-201ENST00000610739 97 ntBASIC0.72□□□□□ -2.29
PCDHGA1Q9Y5H4 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.71□□□□□ -2.3
PCDHGA1Q9Y5H4 Y_RNA.432-201ENST00000384087 111 ntBASIC0.71□□□□□ -2.3
PCDHGA1Q9Y5H4 RNU6-1011P-201ENST00000384668 107 ntBASIC0.71□□□□□ -2.3
PCDHGA1Q9Y5H4 AL606845.1-201ENST00000404881 255 ntBASIC0.71□□□□□ -2.3
PCDHGA1Q9Y5H4 RNU2-70P-201ENST00000410718 179 ntBASIC0.71□□□□□ -2.3
PCDHGA1Q9Y5H4 AC244023.1-201ENST00000426884 112 ntBASIC0.71□□□□□ -2.3
PCDHGA1Q9Y5H4 AF228730.3-201ENST00000436691 102 ntBASIC0.71□□□□□ -2.3
PCDHGA1Q9Y5H4 SNORD36C-201ENST00000516733 66 ntBASIC0.71□□□□□ -2.3
PCDHGA1Q9Y5H4 RNU6-453P-201ENST00000516819 85 ntBASIC0.71□□□□□ -2.3
PCDHGA1Q9Y5H4 MIR4264-201ENST00000583520 66 ntBASIC0.71□□□□□ -2.3
PCDHGA1Q9Y5H4 AC097639.2-201ENST00000603159 172 ntBASIC0.71□□□□□ -2.3
PCDHGA1Q9Y5H4 AC242498.1-201ENST00000604134 111 ntBASIC0.71□□□□□ -2.3
PCDHGA1Q9Y5H4 7SK.10-201ENST00000621414 298 ntBASIC0.71□□□□□ -2.3
PCDHGA1Q9Y5H4 AL589743.1-201ENST00000551932 2712 ntBASIC0.7□□□□□ -2.3
PCDHGA1Q9Y5H4 MIR1-1-201ENST00000362147 71 ntBASIC0.7□□□□□ -2.3
PCDHGA1Q9Y5H4 Y_RNA.91-201ENST00000363042 107 ntBASIC0.7□□□□□ -2.3
PCDHGA1Q9Y5H4 Y_RNA.352-201ENST00000365439 102 ntBASIC0.7□□□□□ -2.3
PCDHGA1Q9Y5H4 Y_RNA.410-201ENST00000383992 113 ntBASIC0.7□□□□□ -2.3
PCDHGA1Q9Y5H4 Y_RNA.622-201ENST00000411091 108 ntBASIC0.7□□□□□ -2.3
PCDHGA1Q9Y5H4 RPS26P5-201ENST00000418544 335 ntBASIC0.7□□□□□ -2.3
PCDHGA1Q9Y5H4 AC090844.1-201ENST00000422019 156 ntBASIC0.7□□□□□ -2.3
PCDHGA1Q9Y5H4 RPS29P24-201ENST00000486345 171 ntBASIC0.7□□□□□ -2.3
PCDHGA1Q9Y5H4 MIR4643-201ENST00000577473 78 ntBASIC0.7□□□□□ -2.3
PCDHGA1Q9Y5H4 MIR924-201ENST00000638017 53 ntBASIC0.7□□□□□ -2.3
PCDHGA1Q9Y5H4 RNA5SP347-201ENST00000362445 119 ntBASIC0.69□□□□□ -2.3
PCDHGA1Q9Y5H4 Y_RNA.47-201ENST00000362697 108 ntBASIC0.69□□□□□ -2.3
PCDHGA1Q9Y5H4 RNU6-653P-201ENST00000363074 106 ntBASIC0.69□□□□□ -2.3
PCDHGA1Q9Y5H4 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
PCDHGA1Q9Y5H4 Y_RNA.396-201ENST00000383949 103 ntBASIC0.69□□□□□ -2.3
PCDHGA1Q9Y5H4 Y_RNA.416-201ENST00000384014 113 ntBASIC0.69□□□□□ -2.3
PCDHGA1Q9Y5H4 RNU6-205P-201ENST00000390858 107 ntBASIC0.69□□□□□ -2.3
PCDHGA1Q9Y5H4 RNU6-913P-201ENST00000390913 95 ntBASIC0.69□□□□□ -2.3
PCDHGA1Q9Y5H4 SNORD99-201ENST00000408612 74 ntBASIC0.69□□□□□ -2.3
PCDHGA1Q9Y5H4 COX6CP6-201ENST00000490840 228 ntBASIC0.69□□□□□ -2.3
PCDHGA1Q9Y5H4 RNU7-53P-201ENST00000516705 60 ntBASIC0.69□□□□□ -2.3
PCDHGA1Q9Y5H4 Z97988.1-201ENST00000637697 135 ntBASIC0.69□□□□□ -2.3
PCDHGA1Q9Y5H4 RNU6-381P-201ENST00000391259 108 ntBASIC0.68□□□□□ -2.3
PCDHGA1Q9Y5H4 AL358176.2-201ENST00000425769 204 ntBASIC0.68□□□□□ -2.3
PCDHGA1Q9Y5H4 MIR4711-201ENST00000578274 70 ntBASIC0.68□□□□□ -2.3
PCDHGA1Q9Y5H4 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC0.67□□□□□ -2.3
PCDHGA1Q9Y5H4 RNU6-369P-201ENST00000362515 102 ntBASIC0.67□□□□□ -2.3
PCDHGA1Q9Y5H4 Y_RNA.199-201ENST00000364014 102 ntBASIC0.67□□□□□ -2.3
PCDHGA1Q9Y5H4 RNU6-694P-201ENST00000364071 147 ntBASIC0.67□□□□□ -2.3
PCDHGA1Q9Y5H4 RNU6-934P-201ENST00000365154 107 ntBASIC0.67□□□□□ -2.3
PCDHGA1Q9Y5H4 Y_RNA.459-201ENST00000384251 102 ntBASIC0.67□□□□□ -2.3
PCDHGA1Q9Y5H4 SNORD38B-201ENST00000384690 67 ntBASIC0.67□□□□□ -2.3
PCDHGA1Q9Y5H4 SNORD105-201ENST00000386910 85 ntBASIC0.67□□□□□ -2.3
PCDHGA1Q9Y5H4 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.67□□□□□ -2.3
PCDHGA1Q9Y5H4 AC011921.3-201ENST00000605540 361 ntBASIC0.67□□□□□ -2.3
PCDHGA1Q9Y5H4 SNORD38B-202ENST00000625943 69 ntBASIC0.67□□□□□ -2.3
PCDHGA1Q9Y5H4 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.66□□□□□ -2.3
PCDHGA1Q9Y5H4 Y_RNA.149-201ENST00000363558 117 ntBASIC0.66□□□□□ -2.3
PCDHGA1Q9Y5H4 Y_RNA.262-201ENST00000364641 102 ntBASIC0.66□□□□□ -2.3
PCDHGA1Q9Y5H4 RNU6-1189P-201ENST00000383958 107 ntBASIC0.66□□□□□ -2.3
PCDHGA1Q9Y5H4 Y_RNA.440-201ENST00000384120 114 ntBASIC0.66□□□□□ -2.3
PCDHGA1Q9Y5H4 RNA5SP193-201ENST00000410353 107 ntBASIC0.66□□□□□ -2.3
PCDHGA1Q9Y5H4 SNORD127-201ENST00000458892 86 ntBASIC0.66□□□□□ -2.3
PCDHGA1Q9Y5H4 snoU13.21-201ENST00000459368 105 ntBASIC0.66□□□□□ -2.3
PCDHGA1Q9Y5H4 RNU7-96P-201ENST00000459535 64 ntBASIC0.66□□□□□ -2.3
PCDHGA1Q9Y5H4 AC004812.1-201ENST00000540773 146 ntBASIC0.66□□□□□ -2.3
PCDHGA1Q9Y5H4 Z83818.1-201ENST00000603584 150 ntBASIC0.66□□□□□ -2.3
PCDHGA1Q9Y5H4 AL442067.1-201ENST00000613261 223 ntBASIC0.66□□□□□ -2.3
PCDHGA1Q9Y5H4 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.66□□□□□ -2.3
PCDHGA1Q9Y5H4 Y_RNA.76-201ENST00000362931 109 ntBASIC0.65□□□□□ -2.31
PCDHGA1Q9Y5H4 Y_RNA.277-201ENST00000364754 102 ntBASIC0.65□□□□□ -2.31
PCDHGA1Q9Y5H4 SNORD77.3-201ENST00000391113 65 ntBASIC0.65□□□□□ -2.31
PCDHGA1Q9Y5H4 RNU6-998P-201ENST00000515894 101 ntBASIC0.65□□□□□ -2.31
PCDHGA1Q9Y5H4 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.65□□□□□ -2.31
PCDHGA1Q9Y5H4 Y_RNA.23-201ENST00000362496 106 ntBASIC0.64□□□□□ -2.31
PCDHGA1Q9Y5H4 Y_RNA.292-201ENST00000364904 97 ntBASIC0.64□□□□□ -2.31
PCDHGA1Q9Y5H4 RNU6-728P-201ENST00000365375 104 ntBASIC0.64□□□□□ -2.31
PCDHGA1Q9Y5H4 RNU4-17P-201ENST00000365598 141 ntBASIC0.64□□□□□ -2.31
PCDHGA1Q9Y5H4 SNORA1-201ENST00000384107 130 ntBASIC0.64□□□□□ -2.31
PCDHGA1Q9Y5H4 RNU1-119P-201ENST00000391122 165 ntBASIC0.64□□□□□ -2.31
PCDHGA1Q9Y5H4 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.64□□□□□ -2.31
PCDHGA1Q9Y5H4 AC244098.3-201ENST00000424803 96 ntBASIC0.64□□□□□ -2.31
PCDHGA1Q9Y5H4 RNU7-62P-201ENST00000458856 62 ntBASIC0.64□□□□□ -2.31
PCDHGA1Q9Y5H4 RNU2-11P-201ENST00000459191 187 ntBASIC0.64□□□□□ -2.31
PCDHGA1Q9Y5H4 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.64□□□□□ -2.31
PCDHGA1Q9Y5H4 RNU6-561P-201ENST00000516222 102 ntBASIC0.64□□□□□ -2.31
PCDHGA1Q9Y5H4 RNA5SP121-201ENST00000516537 101 ntBASIC0.64□□□□□ -2.31
PCDHGA1Q9Y5H4 AC018659.1-201ENST00000551083 169 ntBASIC0.64□□□□□ -2.31
PCDHGA1Q9Y5H4 AL360085.1-201ENST00000604713 532 ntBASIC0.64□□□□□ -2.31
PCDHGA1Q9Y5H4 Y_RNA.30-201ENST00000362572 97 ntBASIC0.63□□□□□ -2.31
PCDHGA1Q9Y5H4 Y_RNA.54-201ENST00000362766 105 ntBASIC0.63□□□□□ -2.31
PCDHGA1Q9Y5H4 Y_RNA.115-201ENST00000363272 98 ntBASIC0.63□□□□□ -2.31
PCDHGA1Q9Y5H4 RNU6-103P-201ENST00000363686 107 ntBASIC0.63□□□□□ -2.31
PCDHGA1Q9Y5H4 Y_RNA.288-201ENST00000364854 92 ntBASIC0.63□□□□□ -2.31
PCDHGA1Q9Y5H4 Y_RNA.562-201ENST00000384695 113 ntBASIC0.63□□□□□ -2.31
PCDHGA1Q9Y5H4 RNU4-43P-201ENST00000410628 137 ntBASIC0.63□□□□□ -2.31
PCDHGA1Q9Y5H4 RNU6-733P-201ENST00000410759 104 ntBASIC0.63□□□□□ -2.31
PCDHGA1Q9Y5H4 RNU2-38P-201ENST00000410856 79 ntBASIC0.63□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 201.5 ms