Protein–RNA interactions for Protein: Q9ULD4

BRPF3, Bromodomain and PHD finger-containing protein 3, humanhuman

Predictions only

Length 1,205 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRPF3Q9ULD4 SNORA26.6-201ENST00000391256 115 ntBASIC2.48□□□□□ -2.01
BRPF3Q9ULD4 RNA5SP261-201ENST00000410536 106 ntBASIC2.48□□□□□ -2.01
BRPF3Q9ULD4 RNU6-1190P-201ENST00000410811 104 ntBASIC2.48□□□□□ -2.01
BRPF3Q9ULD4 RNU6-893P-201ENST00000458841 100 ntBASIC2.48□□□□□ -2.01
BRPF3Q9ULD4 RNU6-322P-201ENST00000516010 103 ntBASIC2.48□□□□□ -2.01
BRPF3Q9ULD4 MIR3613-201ENST00000579844 87 ntBASIC2.48□□□□□ -2.01
BRPF3Q9ULD4 MIR4764-201ENST00000580680 88 ntBASIC2.48□□□□□ -2.01
BRPF3Q9ULD4 AL020996.3-201ENST00000606617 222 ntBASIC2.48□□□□□ -2.01
BRPF3Q9ULD4 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
BRPF3Q9ULD4 Y_RNA.531-201ENST00000384589 121 ntBASIC2.47□□□□□ -2.01
BRPF3Q9ULD4 MIR548D2-201ENST00000384955 97 ntBASIC2.47□□□□□ -2.01
BRPF3Q9ULD4 MIR520C-201ENST00000385005 87 ntBASIC2.47□□□□□ -2.01
BRPF3Q9ULD4 IGHVII-40-1-201ENST00000517316 58 ntBASIC2.47□□□□□ -2.01
BRPF3Q9ULD4 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC2.47□□□□□ -2.01
BRPF3Q9ULD4 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC2.47□□□□□ -2.01
BRPF3Q9ULD4 MIR6717-201ENST00000622747 73 ntBASIC2.47□□□□□ -2.01
BRPF3Q9ULD4 AC008133.2-201ENST00000624540 351 ntBASIC2.47□□□□□ -2.01
BRPF3Q9ULD4 SNORA22.1-201ENST00000362701 134 ntBASIC2.46□□□□□ -2.02
BRPF3Q9ULD4 Y_RNA.171-201ENST00000363760 102 ntBASIC2.46□□□□□ -2.02
BRPF3Q9ULD4 RNU6-106P-201ENST00000384405 107 ntBASIC2.46□□□□□ -2.02
BRPF3Q9ULD4 RNA5SP508-201ENST00000411327 119 ntBASIC2.46□□□□□ -2.02
BRPF3Q9ULD4 AL356320.1-201ENST00000429616 163 ntBASIC2.46□□□□□ -2.02
BRPF3Q9ULD4 RNU7-6P-201ENST00000516845 62 ntBASIC2.46□□□□□ -2.02
BRPF3Q9ULD4 IGKV3-31-201ENST00000523109 329 ntBASIC2.46□□□□□ -2.02
BRPF3Q9ULD4 MIR1273D-201ENST00000577266 86 ntBASIC2.46□□□□□ -2.02
BRPF3Q9ULD4 MIR8074-201ENST00000615081 81 ntBASIC2.46□□□□□ -2.02
BRPF3Q9ULD4 MIR6132-201ENST00000622083 109 ntBASIC2.46□□□□□ -2.02
BRPF3Q9ULD4 MIR6841-201ENST00000637129 72 ntBASIC2.46□□□□□ -2.02
BRPF3Q9ULD4 Y_RNA.49-201ENST00000362714 112 ntBASIC2.45□□□□□ -2.02
BRPF3Q9ULD4 RNA5SP126-201ENST00000365092 109 ntBASIC2.45□□□□□ -2.02
BRPF3Q9ULD4 RPL31P63-201ENST00000422565 375 ntBASIC2.45□□□□□ -2.02
BRPF3Q9ULD4 AL031737.1-201ENST00000450125 223 ntBASIC2.45□□□□□ -2.02
BRPF3Q9ULD4 RNU7-113P-201ENST00000459273 62 ntBASIC2.45□□□□□ -2.02
BRPF3Q9ULD4 snoU13.16-201ENST00000459350 104 ntBASIC2.45□□□□□ -2.02
BRPF3Q9ULD4 RPS23P4-201ENST00000487908 423 ntBASIC2.45□□□□□ -2.02
BRPF3Q9ULD4 RNU6-1258P-201ENST00000516911 111 ntBASIC2.45□□□□□ -2.02
BRPF3Q9ULD4 MIR6873-201ENST00000622788 63 ntBASIC2.45□□□□□ -2.02
BRPF3Q9ULD4 Y_RNA.344-201ENST00000365381 112 ntBASIC2.44□□□□□ -2.02
BRPF3Q9ULD4 MIR30A-201ENST00000385092 71 ntBASIC2.44□□□□□ -2.02
BRPF3Q9ULD4 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
BRPF3Q9ULD4 AL451046.2-201ENST00000403074 277 ntBASIC2.44□□□□□ -2.02
BRPF3Q9ULD4 RNU6-554P-201ENST00000410466 106 ntBASIC2.44□□□□□ -2.02
BRPF3Q9ULD4 RNU2-40P-201ENST00000410833 196 ntBASIC2.44□□□□□ -2.02
BRPF3Q9ULD4 MIR450A1-201ENST00000362262 91 ntBASIC2.43□□□□□ -2.02
BRPF3Q9ULD4 Y_RNA.430-201ENST00000384081 110 ntBASIC2.43□□□□□ -2.02
BRPF3Q9ULD4 SNORA77B-201ENST00000578179 125 ntBASIC2.43□□□□□ -2.02
BRPF3Q9ULD4 MIR4435-1-201ENST00000582552 80 ntBASIC2.43□□□□□ -2.02
BRPF3Q9ULD4 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.43□□□□□ -2.02
BRPF3Q9ULD4 RNU6-1014P-201ENST00000383940 103 ntBASIC2.42□□□□□ -2.02
BRPF3Q9ULD4 RNA5SP425-201ENST00000410336 112 ntBASIC2.42□□□□□ -2.02
BRPF3Q9ULD4 HMGN1P33-201ENST00000432945 451 ntBASIC2.42□□□□□ -2.02
BRPF3Q9ULD4 RPL39P34-201ENST00000477141 156 ntBASIC2.42□□□□□ -2.02
BRPF3Q9ULD4 AC103810.8-201ENST00000607347 118 ntBASIC2.42□□□□□ -2.02
BRPF3Q9ULD4 Y_RNA.783-201ENST00000613546 102 ntBASIC2.42□□□□□ -2.02
BRPF3Q9ULD4 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
BRPF3Q9ULD4 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.42□□□□□ -2.02
BRPF3Q9ULD4 SNORD115-2-201ENST00000362842 82 ntBASIC2.41□□□□□ -2.02
BRPF3Q9ULD4 Y_RNA.163-201ENST00000363702 113 ntBASIC2.41□□□□□ -2.02
BRPF3Q9ULD4 Y_RNA.299-201ENST00000364973 94 ntBASIC2.41□□□□□ -2.02
BRPF3Q9ULD4 SNORD115-20-201ENST00000365099 82 ntBASIC2.41□□□□□ -2.02
BRPF3Q9ULD4 Y_RNA.323-201ENST00000365157 109 ntBASIC2.41□□□□□ -2.02
BRPF3Q9ULD4 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.41□□□□□ -2.02
BRPF3Q9ULD4 AC113410.1-201ENST00000505029 247 ntBASIC2.41□□□□□ -2.02
BRPF3Q9ULD4 RNU1-41P-201ENST00000516161 162 ntBASIC2.41□□□□□ -2.02
BRPF3Q9ULD4 RNU1-48P-201ENST00000516400 162 ntBASIC2.41□□□□□ -2.02
BRPF3Q9ULD4 AC015688.6-201ENST00000577737 104 ntBASIC2.41□□□□□ -2.02
BRPF3Q9ULD4 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.41□□□□□ -2.02
BRPF3Q9ULD4 SNRPGP19-201ENST00000603826 189 ntBASIC2.41□□□□□ -2.02
BRPF3Q9ULD4 RNU6-94P-201ENST00000607728 107 ntBASIC2.41□□□□□ -2.02
BRPF3Q9ULD4 MIR8055-201ENST00000610739 97 ntBASIC2.41□□□□□ -2.02
BRPF3Q9ULD4 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.41□□□□□ -2.02
BRPF3Q9ULD4 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
BRPF3Q9ULD4 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.41□□□□□ -2.02
BRPF3Q9ULD4 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
BRPF3Q9ULD4 SNORA1.1-201ENST00000364671 133 ntBASIC2.4□□□□□ -2.03
BRPF3Q9ULD4 U8.6-201ENST00000364939 135 ntBASIC2.4□□□□□ -2.03
BRPF3Q9ULD4 MIR1302-5-201ENST00000408164 150 ntBASIC2.4□□□□□ -2.03
BRPF3Q9ULD4 RPS3AP1-201ENST00000413190 320 ntBASIC2.4□□□□□ -2.03
BRPF3Q9ULD4 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
BRPF3Q9ULD4 AC068339.1-201ENST00000526965 141 ntBASIC2.4□□□□□ -2.03
BRPF3Q9ULD4 AL513534.2-201ENST00000603836 250 ntBASIC2.4□□□□□ -2.03
BRPF3Q9ULD4 AC087741.2-201ENST00000619415 172 ntBASIC2.4□□□□□ -2.03
BRPF3Q9ULD4 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.4□□□□□ -2.03
BRPF3Q9ULD4 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
BRPF3Q9ULD4 Y_RNA.470-201ENST00000384307 117 ntBASIC2.39□□□□□ -2.03
BRPF3Q9ULD4 SNORD41-201ENST00000386967 70 ntBASIC2.39□□□□□ -2.03
BRPF3Q9ULD4 RNU4-69P-201ENST00000410677 143 ntBASIC2.39□□□□□ -2.03
BRPF3Q9ULD4 RNU7-41P-201ENST00000515917 61 ntBASIC2.39□□□□□ -2.03
BRPF3Q9ULD4 RNA5SP33-201ENST00000516687 98 ntBASIC2.39□□□□□ -2.03
BRPF3Q9ULD4 RNU6-922P-201ENST00000516753 99 ntBASIC2.39□□□□□ -2.03
BRPF3Q9ULD4 MIR5009-201ENST00000578736 100 ntBASIC2.39□□□□□ -2.03
BRPF3Q9ULD4 MIR5089-201ENST00000580047 84 ntBASIC2.39□□□□□ -2.03
BRPF3Q9ULD4 MIR4251-201ENST00000635819 61 ntBASIC2.39□□□□□ -2.03
BRPF3Q9ULD4 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
BRPF3Q9ULD4 Y_RNA.309-201ENST00000365046 111 ntBASIC2.38□□□□□ -2.03
BRPF3Q9ULD4 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.38□□□□□ -2.03
BRPF3Q9ULD4 RNU6-168P-201ENST00000516189 101 ntBASIC2.38□□□□□ -2.03
BRPF3Q9ULD4 MIR4513-201ENST00000581077 86 ntBASIC2.38□□□□□ -2.03
BRPF3Q9ULD4 MIR219B-201ENST00000637023 88 ntBASIC2.38□□□□□ -2.03
BRPF3Q9ULD4 RNA5SP89-201ENST00000410300 108 ntBASIC2.37□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 190.5 ms