Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 RNA5SP402-201ENST00000517148 110 ntBASIC2.56□□□□□ -2
CNTN3Q9P232 MIR3945-201ENST00000581853 98 ntBASIC2.56□□□□□ -2
CNTN3Q9P232 AL513534.2-201ENST00000603836 250 ntBASIC2.56□□□□□ -2
CNTN3Q9P232 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
CNTN3Q9P232 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.55□□□□□ -2
CNTN3Q9P232 Y_RNA.360-201ENST00000365512 102 ntBASIC2.55□□□□□ -2
CNTN3Q9P232 RNU6-913P-201ENST00000390913 95 ntBASIC2.55□□□□□ -2
CNTN3Q9P232 RNA5SP212-201ENST00000391223 107 ntBASIC2.55□□□□□ -2
CNTN3Q9P232 SNORA3.2-201ENST00000408221 125 ntBASIC2.55□□□□□ -2
CNTN3Q9P232 RNU7-43P-201ENST00000516554 64 ntBASIC2.55□□□□□ -2
CNTN3Q9P232 RNU6-844P-201ENST00000517175 102 ntBASIC2.55□□□□□ -2
CNTN3Q9P232 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.54□□□□□ -2
CNTN3Q9P232 RNU6-832P-201ENST00000363319 107 ntBASIC2.54□□□□□ -2
CNTN3Q9P232 Y_RNA.470-201ENST00000384307 117 ntBASIC2.54□□□□□ -2
CNTN3Q9P232 RNU6-1018P-201ENST00000516577 106 ntBASIC2.54□□□□□ -2
CNTN3Q9P232 AC121758.2-201ENST00000553271 193 ntBASIC2.54□□□□□ -2
CNTN3Q9P232 MIR5007-201ENST00000583098 95 ntBASIC2.54□□□□□ -2
CNTN3Q9P232 MIR548AE2-201ENST00000583456 67 ntBASIC2.54□□□□□ -2
CNTN3Q9P232 AL442128.1-201ENST00000615151 90 ntBASIC2.54□□□□□ -2
CNTN3Q9P232 MALAT1.1-201ENST00000618249 95 ntBASIC2.54□□□□□ -2
CNTN3Q9P232 AP000648.3-201ENST00000623539 4507 ntBASIC2.54□□□□□ -2
CNTN3Q9P232 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.54□□□□□ -2
CNTN3Q9P232 ZNF658B-202ENST00000615961 3375 ntBASIC2.53□□□□□ -2
CNTN3Q9P232 RNU6-457P-201ENST00000363999 107 ntBASIC2.53□□□□□ -2
CNTN3Q9P232 Y_RNA.354-201ENST00000365448 111 ntBASIC2.53□□□□□ -2
CNTN3Q9P232 MIR577-201ENST00000385196 96 ntBASIC2.53□□□□□ -2
CNTN3Q9P232 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC2.53□□□□□ -2
CNTN3Q9P232 MIR4287-201ENST00000579398 78 ntBASIC2.53□□□□□ -2
CNTN3Q9P232 MIR8055-201ENST00000610739 97 ntBASIC2.53□□□□□ -2
CNTN3Q9P232 AC005336.3-201ENST00000623833 2679 ntBASIC2.52□□□□□ -2.01
CNTN3Q9P232 SNORA26.2-201ENST00000390922 122 ntBASIC2.52□□□□□ -2.01
CNTN3Q9P232 AC096949.1-201ENST00000412047 152 ntBASIC2.52□□□□□ -2.01
CNTN3Q9P232 RNA5SP57-201ENST00000459463 123 ntBASIC2.52□□□□□ -2.01
CNTN3Q9P232 AC024614.2-201ENST00000577584 372 ntBASIC2.52□□□□□ -2.01
CNTN3Q9P232 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
CNTN3Q9P232 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.51□□□□□ -2.01
CNTN3Q9P232 MIR21-201ENST00000362134 72 ntBASIC2.51□□□□□ -2.01
CNTN3Q9P232 Y_RNA.96-201ENST00000363092 109 ntBASIC2.51□□□□□ -2.01
CNTN3Q9P232 SNORA1.1-201ENST00000364671 133 ntBASIC2.51□□□□□ -2.01
CNTN3Q9P232 Y_RNA.377-201ENST00000365644 108 ntBASIC2.51□□□□□ -2.01
CNTN3Q9P232 RNU6-616P-201ENST00000384353 107 ntBASIC2.51□□□□□ -2.01
CNTN3Q9P232 AL023284.1-201ENST00000403956 276 ntBASIC2.51□□□□□ -2.01
CNTN3Q9P232 RNU6-1190P-201ENST00000410811 104 ntBASIC2.51□□□□□ -2.01
CNTN3Q9P232 RNU1-41P-201ENST00000516161 162 ntBASIC2.51□□□□□ -2.01
CNTN3Q9P232 RNU1-48P-201ENST00000516400 162 ntBASIC2.51□□□□□ -2.01
CNTN3Q9P232 SNORA31.17-201ENST00000516953 127 ntBASIC2.51□□□□□ -2.01
CNTN3Q9P232 MIR6895-201ENST00000613497 78 ntBASIC2.51□□□□□ -2.01
CNTN3Q9P232 SNORD114-30-201ENST00000364448 72 ntBASIC2.5□□□□□ -2.01
CNTN3Q9P232 Y_RNA.342-201ENST00000365352 113 ntBASIC2.5□□□□□ -2.01
CNTN3Q9P232 SNORA18-201ENST00000384416 132 ntBASIC2.5□□□□□ -2.01
CNTN3Q9P232 MIR605-201ENST00000385078 83 ntBASIC2.5□□□□□ -2.01
CNTN3Q9P232 SNORA7.5-201ENST00000410672 110 ntBASIC2.5□□□□□ -2.01
CNTN3Q9P232 Z98742.3-201ENST00000418637 326 ntBASIC2.5□□□□□ -2.01
CNTN3Q9P232 AL356320.1-201ENST00000429616 163 ntBASIC2.5□□□□□ -2.01
CNTN3Q9P232 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
CNTN3Q9P232 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
CNTN3Q9P232 RNY4P29-201ENST00000410801 97 ntBASIC2.49□□□□□ -2.01
CNTN3Q9P232 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.49□□□□□ -2.01
CNTN3Q9P232 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
CNTN3Q9P232 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.48□□□□□ -2.01
CNTN3Q9P232 SNORD45B-201ENST00000364617 72 ntBASIC2.48□□□□□ -2.01
CNTN3Q9P232 SNORA70B-201ENST00000384210 135 ntBASIC2.48□□□□□ -2.01
CNTN3Q9P232 RNY1P7-201ENST00000384743 110 ntBASIC2.48□□□□□ -2.01
CNTN3Q9P232 RNU6-679P-201ENST00000391003 106 ntBASIC2.48□□□□□ -2.01
CNTN3Q9P232 RNA5SP425-201ENST00000410336 112 ntBASIC2.48□□□□□ -2.01
CNTN3Q9P232 AC004941.2-201ENST00000427009 228 ntBASIC2.48□□□□□ -2.01
CNTN3Q9P232 RNU6-322P-201ENST00000516010 103 ntBASIC2.48□□□□□ -2.01
CNTN3Q9P232 RNU6-521P-201ENST00000516663 105 ntBASIC2.48□□□□□ -2.01
CNTN3Q9P232 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.48□□□□□ -2.01
CNTN3Q9P232 MIR4764-201ENST00000580680 88 ntBASIC2.48□□□□□ -2.01
CNTN3Q9P232 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.48□□□□□ -2.01
CNTN3Q9P232 AC008133.2-201ENST00000624540 351 ntBASIC2.48□□□□□ -2.01
CNTN3Q9P232 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
CNTN3Q9P232 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.47□□□□□ -2.01
CNTN3Q9P232 RNA5SP276-201ENST00000362580 94 ntBASIC2.47□□□□□ -2.01
CNTN3Q9P232 MIR520C-201ENST00000385005 87 ntBASIC2.47□□□□□ -2.01
CNTN3Q9P232 RN7SKP223-201ENST00000410582 62 ntBASIC2.47□□□□□ -2.01
CNTN3Q9P232 AC004965.1-201ENST00000413033 213 ntBASIC2.47□□□□□ -2.01
CNTN3Q9P232 AC096720.1-201ENST00000604441 183 ntBASIC2.47□□□□□ -2.01
CNTN3Q9P232 AL773524.1-201ENST00000614065 229 ntBASIC2.47□□□□□ -2.01
CNTN3Q9P232 MIR6766-201ENST00000622641 72 ntBASIC2.47□□□□□ -2.01
CNTN3Q9P232 Z97988.1-201ENST00000637697 135 ntBASIC2.47□□□□□ -2.01
CNTN3Q9P232 RNU6-170P-201ENST00000362832 104 ntBASIC2.46□□□□□ -2.02
CNTN3Q9P232 MIR17-201ENST00000385012 84 ntBASIC2.46□□□□□ -2.02
CNTN3Q9P232 AL353813.1-201ENST00000440700 253 ntBASIC2.46□□□□□ -2.02
CNTN3Q9P232 MIR1270-201ENST00000459320 83 ntBASIC2.46□□□□□ -2.02
CNTN3Q9P232 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.46□□□□□ -2.02
CNTN3Q9P232 RNU6-917P-201ENST00000516294 104 ntBASIC2.46□□□□□ -2.02
CNTN3Q9P232 RNU6-762P-201ENST00000517107 102 ntBASIC2.46□□□□□ -2.02
CNTN3Q9P232 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC2.46□□□□□ -2.02
CNTN3Q9P232 MIR1273D-201ENST00000577266 86 ntBASIC2.46□□□□□ -2.02
CNTN3Q9P232 MIR6840-201ENST00000611937 71 ntBASIC2.46□□□□□ -2.02
CNTN3Q9P232 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.45□□□□□ -2.02
CNTN3Q9P232 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.45□□□□□ -2.02
CNTN3Q9P232 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.45□□□□□ -2.02
CNTN3Q9P232 SNORA32-201ENST00000384072 121 ntBASIC2.45□□□□□ -2.02
CNTN3Q9P232 RNU6-1201P-201ENST00000384227 107 ntBASIC2.45□□□□□ -2.02
CNTN3Q9P232 RNU6-820P-201ENST00000384273 107 ntBASIC2.45□□□□□ -2.02
CNTN3Q9P232 MIR194-1-201ENST00000384892 85 ntBASIC2.45□□□□□ -2.02
CNTN3Q9P232 MIR450A2-201ENST00000385022 100 ntBASIC2.45□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 166 ms