Protein–RNA interactions for Protein: Q9P0J7

KCMF1, E3 ubiquitin-protein ligase KCMF1, humanhuman

Predictions only

Length 381 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KCMF1Q9P0J7 SNORD116-21-201ENST00000384507 92 ntBASIC1.85□□□□□ -2.11
KCMF1Q9P0J7 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
KCMF1Q9P0J7 RNU6-913P-201ENST00000390913 95 ntBASIC1.85□□□□□ -2.11
KCMF1Q9P0J7 RNU6-1190P-201ENST00000410811 104 ntBASIC1.85□□□□□ -2.11
KCMF1Q9P0J7 COX6CP6-201ENST00000490840 228 ntBASIC1.85□□□□□ -2.11
KCMF1Q9P0J7 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.85□□□□□ -2.11
KCMF1Q9P0J7 RNU2-35P-201ENST00000516446 142 ntBASIC1.85□□□□□ -2.11
KCMF1Q9P0J7 MIR3683-201ENST00000580847 82 ntBASIC1.85□□□□□ -2.11
KCMF1Q9P0J7 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
KCMF1Q9P0J7 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
KCMF1Q9P0J7 RNA5SP144-201ENST00000410846 116 ntBASIC1.84□□□□□ -2.11
KCMF1Q9P0J7 MTATP6P29-201ENST00000415057 132 ntBASIC1.84□□□□□ -2.11
KCMF1Q9P0J7 HMGN2P23-201ENST00000456759 269 ntBASIC1.84□□□□□ -2.11
KCMF1Q9P0J7 RNU7-73P-201ENST00000458743 63 ntBASIC1.84□□□□□ -2.11
KCMF1Q9P0J7 AC005908.1-201ENST00000468701 347 ntBASIC1.84□□□□□ -2.11
KCMF1Q9P0J7 RNA5SP364-201ENST00000516938 78 ntBASIC1.84□□□□□ -2.11
KCMF1Q9P0J7 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.12
KCMF1Q9P0J7 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.12
KCMF1Q9P0J7 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
KCMF1Q9P0J7 Y_RNA.35-201ENST00000362601 101 ntBASIC1.83□□□□□ -2.12
KCMF1Q9P0J7 SNORD41-201ENST00000386967 70 ntBASIC1.83□□□□□ -2.12
KCMF1Q9P0J7 AC019129.1-201ENST00000403786 261 ntBASIC1.83□□□□□ -2.12
KCMF1Q9P0J7 SUMO2P12-201ENST00000405924 140 ntBASIC1.83□□□□□ -2.12
KCMF1Q9P0J7 HMGN2P19-201ENST00000425149 265 ntBASIC1.83□□□□□ -2.12
KCMF1Q9P0J7 RPL23AP42-201ENST00000471152 471 ntBASIC1.83□□□□□ -2.12
KCMF1Q9P0J7 AC022523.2-201ENST00000561045 150 ntBASIC1.83□□□□□ -2.12
KCMF1Q9P0J7 MIR4769-201ENST00000584126 77 ntBASIC1.83□□□□□ -2.12
KCMF1Q9P0J7 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.83□□□□□ -2.12
KCMF1Q9P0J7 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.83□□□□□ -2.12
KCMF1Q9P0J7 Y_RNA.198-201ENST00000364013 98 ntBASIC1.82□□□□□ -2.12
KCMF1Q9P0J7 Y_RNA.213-201ENST00000364178 111 ntBASIC1.82□□□□□ -2.12
KCMF1Q9P0J7 RNU6-1104P-201ENST00000384723 104 ntBASIC1.82□□□□□ -2.12
KCMF1Q9P0J7 RNU6-1319P-201ENST00000390855 104 ntBASIC1.82□□□□□ -2.12
KCMF1Q9P0J7 RNU6-747P-201ENST00000390928 104 ntBASIC1.82□□□□□ -2.12
KCMF1Q9P0J7 RNU6-241P-201ENST00000391148 104 ntBASIC1.82□□□□□ -2.12
KCMF1Q9P0J7 RNU6-177P-201ENST00000411257 104 ntBASIC1.82□□□□□ -2.12
KCMF1Q9P0J7 AL022718.1-201ENST00000412004 84 ntBASIC1.82□□□□□ -2.12
KCMF1Q9P0J7 HMGN1P33-201ENST00000432945 451 ntBASIC1.82□□□□□ -2.12
KCMF1Q9P0J7 HSPE1P24-201ENST00000450782 238 ntBASIC1.82□□□□□ -2.12
KCMF1Q9P0J7 snoU13.9-201ENST00000458927 103 ntBASIC1.82□□□□□ -2.12
KCMF1Q9P0J7 snoU13.16-201ENST00000459350 104 ntBASIC1.82□□□□□ -2.12
KCMF1Q9P0J7 RNU7-41P-201ENST00000515917 61 ntBASIC1.82□□□□□ -2.12
KCMF1Q9P0J7 RNU6-237P-201ENST00000515985 71 ntBASIC1.82□□□□□ -2.12
KCMF1Q9P0J7 SNORD111.1-201ENST00000516421 86 ntBASIC1.82□□□□□ -2.12
KCMF1Q9P0J7 DNAJC19P9-201ENST00000555084 351 ntBASIC1.82□□□□□ -2.12
KCMF1Q9P0J7 MIR3152-201ENST00000579801 74 ntBASIC1.82□□□□□ -2.12
KCMF1Q9P0J7 AL513534.2-201ENST00000603836 250 ntBASIC1.82□□□□□ -2.12
KCMF1Q9P0J7 AC012493.3-201ENST00000604494 112 ntBASIC1.82□□□□□ -2.12
KCMF1Q9P0J7 AL020996.3-201ENST00000606617 222 ntBASIC1.82□□□□□ -2.12
KCMF1Q9P0J7 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.82□□□□□ -2.12
KCMF1Q9P0J7 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.81□□□□□ -2.12
KCMF1Q9P0J7 MIR30A-201ENST00000385092 71 ntBASIC1.81□□□□□ -2.12
KCMF1Q9P0J7 MIR759-201ENST00000390224 91 ntBASIC1.81□□□□□ -2.12
KCMF1Q9P0J7 MIR676-201ENST00000390702 67 ntBASIC1.81□□□□□ -2.12
KCMF1Q9P0J7 POLR2J4-204ENST00000418424 324 ntBASIC1.81□□□□□ -2.12
KCMF1Q9P0J7 AL445685.2-201ENST00000422551 342 ntBASIC1.81□□□□□ -2.12
KCMF1Q9P0J7 AL512326.2-201ENST00000426359 151 ntBASIC1.81□□□□□ -2.12
KCMF1Q9P0J7 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC1.81□□□□□ -2.12
KCMF1Q9P0J7 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.81□□□□□ -2.12
KCMF1Q9P0J7 RN7SL274P-201ENST00000492268 272 ntBASIC1.81□□□□□ -2.12
KCMF1Q9P0J7 Y_RNA.709-201ENST00000516952 92 ntBASIC1.81□□□□□ -2.12
KCMF1Q9P0J7 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.81□□□□□ -2.12
KCMF1Q9P0J7 MIR6717-201ENST00000622747 73 ntBASIC1.81□□□□□ -2.12
KCMF1Q9P0J7 MIR4251-201ENST00000635819 61 ntBASIC1.81□□□□□ -2.12
KCMF1Q9P0J7 SNORA22.1-201ENST00000362701 134 ntBASIC1.8□□□□□ -2.12
KCMF1Q9P0J7 RNU6-880P-201ENST00000384526 107 ntBASIC1.8□□□□□ -2.12
KCMF1Q9P0J7 MT-TI-201ENST00000387365 69 ntBASIC1.8□□□□□ -2.12
KCMF1Q9P0J7 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
KCMF1Q9P0J7 MIR764-201ENST00000390811 85 ntBASIC1.8□□□□□ -2.12
KCMF1Q9P0J7 RNY4P18-201ENST00000391107 89 ntBASIC1.8□□□□□ -2.12
KCMF1Q9P0J7 SNORA26.6-201ENST00000391256 115 ntBASIC1.8□□□□□ -2.12
KCMF1Q9P0J7 RNA5SP261-201ENST00000410536 106 ntBASIC1.8□□□□□ -2.12
KCMF1Q9P0J7 AL591806.2-201ENST00000433122 173 ntBASIC1.8□□□□□ -2.12
KCMF1Q9P0J7 RNU6-589P-201ENST00000516485 107 ntBASIC1.8□□□□□ -2.12
KCMF1Q9P0J7 SNORA44.1-201ENST00000517031 108 ntBASIC1.8□□□□□ -2.12
KCMF1Q9P0J7 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.8□□□□□ -2.12
KCMF1Q9P0J7 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC1.8□□□□□ -2.12
KCMF1Q9P0J7 WWP1P1-201ENST00000466609 2769 ntBASIC1.8□□□□□ -2.12
KCMF1Q9P0J7 Y_RNA.171-201ENST00000363760 102 ntBASIC1.79□□□□□ -2.12
KCMF1Q9P0J7 AC019176.1-201ENST00000518519 225 ntBASIC1.79□□□□□ -2.12
KCMF1Q9P0J7 AC004812.1-201ENST00000540773 146 ntBASIC1.79□□□□□ -2.12
KCMF1Q9P0J7 AC007012.1-201ENST00000567192 175 ntBASIC1.79□□□□□ -2.12
KCMF1Q9P0J7 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.79□□□□□ -2.12
KCMF1Q9P0J7 SNORA63.4-201ENST00000362763 126 ntBASIC1.78□□□□□ -2.12
KCMF1Q9P0J7 SNORA1.1-201ENST00000364671 133 ntBASIC1.78□□□□□ -2.12
KCMF1Q9P0J7 MIR583-201ENST00000384846 75 ntBASIC1.78□□□□□ -2.12
KCMF1Q9P0J7 U8.13-201ENST00000390842 128 ntBASIC1.78□□□□□ -2.12
KCMF1Q9P0J7 SNORA40.18-201ENST00000391200 128 ntBASIC1.78□□□□□ -2.12
KCMF1Q9P0J7 RNA5SP489-201ENST00000410986 109 ntBASIC1.78□□□□□ -2.12
KCMF1Q9P0J7 AC003989.2-201ENST00000440224 169 ntBASIC1.78□□□□□ -2.12
KCMF1Q9P0J7 RNU6-893P-201ENST00000458841 100 ntBASIC1.78□□□□□ -2.12
KCMF1Q9P0J7 RNU7-113P-201ENST00000459273 62 ntBASIC1.78□□□□□ -2.12
KCMF1Q9P0J7 RNA5SP182-201ENST00000516064 82 ntBASIC1.78□□□□□ -2.12
KCMF1Q9P0J7 RNU6-947P-201ENST00000516264 106 ntBASIC1.78□□□□□ -2.12
KCMF1Q9P0J7 RNU6-295P-201ENST00000516901 104 ntBASIC1.78□□□□□ -2.12
KCMF1Q9P0J7 RNU6-1258P-201ENST00000516911 111 ntBASIC1.78□□□□□ -2.12
KCMF1Q9P0J7 MIR548AO-201ENST00000579992 96 ntBASIC1.78□□□□□ -2.12
KCMF1Q9P0J7 GHRLOS.1-201ENST00000610995 70 ntBASIC1.78□□□□□ -2.12
KCMF1Q9P0J7 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.77□□□□□ -2.13
KCMF1Q9P0J7 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 177.4 ms