Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 Y_RNA.299-201ENST00000364973 94 ntBASIC2.56□□□□□ -2
CCDC87Q9NVE4 Y_RNA.323-201ENST00000365157 109 ntBASIC2.56□□□□□ -2
CCDC87Q9NVE4 RNU6-106P-201ENST00000384405 107 ntBASIC2.56□□□□□ -2
CCDC87Q9NVE4 MIR194-1-201ENST00000384892 85 ntBASIC2.56□□□□□ -2
CCDC87Q9NVE4 MIR1302-5-201ENST00000408164 150 ntBASIC2.56□□□□□ -2
CCDC87Q9NVE4 AC004965.1-201ENST00000413033 213 ntBASIC2.56□□□□□ -2
CCDC87Q9NVE4 SNORA31.4-201ENST00000516049 129 ntBASIC2.56□□□□□ -2
CCDC87Q9NVE4 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
CCDC87Q9NVE4 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.56□□□□□ -2
CCDC87Q9NVE4 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
CCDC87Q9NVE4 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.55□□□□□ -2
CCDC87Q9NVE4 RNA5SP276-201ENST00000362580 94 ntBASIC2.55□□□□□ -2
CCDC87Q9NVE4 Y_RNA.531-201ENST00000384589 121 ntBASIC2.55□□□□□ -2
CCDC87Q9NVE4 Y_RNA.549-201ENST00000384657 102 ntBASIC2.55□□□□□ -2
CCDC87Q9NVE4 MIR548D2-201ENST00000384955 97 ntBASIC2.55□□□□□ -2
CCDC87Q9NVE4 AL445685.2-201ENST00000422551 342 ntBASIC2.55□□□□□ -2
CCDC87Q9NVE4 RPL23AP6-201ENST00000446637 472 ntBASIC2.55□□□□□ -2
CCDC87Q9NVE4 AC004812.1-201ENST00000540773 146 ntBASIC2.55□□□□□ -2
CCDC87Q9NVE4 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC2.55□□□□□ -2
CCDC87Q9NVE4 MIR5002-201ENST00000584713 97 ntBASIC2.55□□□□□ -2
CCDC87Q9NVE4 MIR4791-201ENST00000607666 84 ntBASIC2.55□□□□□ -2
CCDC87Q9NVE4 MIR203B-201ENST00000636080 86 ntBASIC2.55□□□□□ -2
CCDC87Q9NVE4 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.54□□□□□ -2
CCDC87Q9NVE4 SNORA63.5-201ENST00000363548 123 ntBASIC2.54□□□□□ -2
CCDC87Q9NVE4 RNU6-32P-201ENST00000383948 107 ntBASIC2.54□□□□□ -2
CCDC87Q9NVE4 Y_RNA.430-201ENST00000384081 110 ntBASIC2.54□□□□□ -2
CCDC87Q9NVE4 RNU6-13P-201ENST00000384248 107 ntBASIC2.54□□□□□ -2
CCDC87Q9NVE4 RNU6-12P-201ENST00000384604 107 ntBASIC2.54□□□□□ -2
CCDC87Q9NVE4 RNU6-1104P-201ENST00000384723 104 ntBASIC2.54□□□□□ -2
CCDC87Q9NVE4 RNU6-41P-201ENST00000384741 107 ntBASIC2.54□□□□□ -2
CCDC87Q9NVE4 MIR144-201ENST00000384886 86 ntBASIC2.54□□□□□ -2
CCDC87Q9NVE4 SNORD28B-201ENST00000390993 75 ntBASIC2.54□□□□□ -2
CCDC87Q9NVE4 POLR2J4-204ENST00000418424 324 ntBASIC2.54□□□□□ -2
CCDC87Q9NVE4 snoU13.16-201ENST00000459350 104 ntBASIC2.54□□□□□ -2
CCDC87Q9NVE4 RNU6-322P-201ENST00000516010 103 ntBASIC2.54□□□□□ -2
CCDC87Q9NVE4 RNA5SP82-201ENST00000516707 92 ntBASIC2.54□□□□□ -2
CCDC87Q9NVE4 uc_338.28-201ENST00000612082 187 ntBASIC2.54□□□□□ -2
CCDC87Q9NVE4 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
CCDC87Q9NVE4 RNU6-1014P-201ENST00000383940 103 ntBASIC2.53□□□□□ -2
CCDC87Q9NVE4 RNU6-1113P-201ENST00000384348 107 ntBASIC2.53□□□□□ -2
CCDC87Q9NVE4 MT-TI-201ENST00000387365 69 ntBASIC2.53□□□□□ -2
CCDC87Q9NVE4 AL035470.1-201ENST00000622571 220 ntBASIC2.53□□□□□ -2
CCDC87Q9NVE4 Y_RNA.163-201ENST00000363702 113 ntBASIC2.52□□□□□ -2.01
CCDC87Q9NVE4 RNU6-203P-201ENST00000384038 104 ntBASIC2.52□□□□□ -2.01
CCDC87Q9NVE4 MIR499A-201ENST00000384903 122 ntBASIC2.52□□□□□ -2.01
CCDC87Q9NVE4 JTBP1-201ENST00000441314 247 ntBASIC2.52□□□□□ -2.01
CCDC87Q9NVE4 RPS23P4-201ENST00000487908 423 ntBASIC2.52□□□□□ -2.01
CCDC87Q9NVE4 RNU6-168P-201ENST00000516189 101 ntBASIC2.52□□□□□ -2.01
CCDC87Q9NVE4 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.52□□□□□ -2.01
CCDC87Q9NVE4 AC022523.2-201ENST00000561045 150 ntBASIC2.52□□□□□ -2.01
CCDC87Q9NVE4 MIR5089-201ENST00000580047 84 ntBASIC2.52□□□□□ -2.01
CCDC87Q9NVE4 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC2.51□□□□□ -2.01
CCDC87Q9NVE4 SNORD115-2-201ENST00000362842 82 ntBASIC2.51□□□□□ -2.01
CCDC87Q9NVE4 RNY1P10-201ENST00000363268 113 ntBASIC2.51□□□□□ -2.01
CCDC87Q9NVE4 SNORD115-20-201ENST00000365099 82 ntBASIC2.51□□□□□ -2.01
CCDC87Q9NVE4 Y_RNA.355-201ENST00000365462 98 ntBASIC2.51□□□□□ -2.01
CCDC87Q9NVE4 SNORA51.10-201ENST00000384418 136 ntBASIC2.51□□□□□ -2.01
CCDC87Q9NVE4 MIR653-201ENST00000385279 96 ntBASIC2.51□□□□□ -2.01
CCDC87Q9NVE4 RNU6-554P-201ENST00000410466 106 ntBASIC2.51□□□□□ -2.01
CCDC87Q9NVE4 BTF3P4-201ENST00000418852 495 ntBASIC2.51□□□□□ -2.01
CCDC87Q9NVE4 MIR4287-201ENST00000579398 78 ntBASIC2.51□□□□□ -2.01
CCDC87Q9NVE4 SNRPGP19-201ENST00000603826 189 ntBASIC2.51□□□□□ -2.01
CCDC87Q9NVE4 AL020996.3-201ENST00000606617 222 ntBASIC2.51□□□□□ -2.01
CCDC87Q9NVE4 MIR8070-201ENST00000616510 88 ntBASIC2.51□□□□□ -2.01
CCDC87Q9NVE4 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
CCDC87Q9NVE4 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
CCDC87Q9NVE4 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
CCDC87Q9NVE4 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
CCDC87Q9NVE4 RNU6-661P-201ENST00000362409 107 ntBASIC2.5□□□□□ -2.01
CCDC87Q9NVE4 RNU6-766P-201ENST00000362478 107 ntBASIC2.5□□□□□ -2.01
CCDC87Q9NVE4 SNORA22.1-201ENST00000362701 134 ntBASIC2.5□□□□□ -2.01
CCDC87Q9NVE4 RNA5SP190-201ENST00000365222 118 ntBASIC2.5□□□□□ -2.01
CCDC87Q9NVE4 SNORA26.6-201ENST00000391256 115 ntBASIC2.5□□□□□ -2.01
CCDC87Q9NVE4 AL161935.2-201ENST00000414627 60 ntBASIC2.5□□□□□ -2.01
CCDC87Q9NVE4 AL512326.2-201ENST00000426359 151 ntBASIC2.5□□□□□ -2.01
CCDC87Q9NVE4 RNU7-113P-201ENST00000459273 62 ntBASIC2.5□□□□□ -2.01
CCDC87Q9NVE4 RNU6-917P-201ENST00000516294 104 ntBASIC2.5□□□□□ -2.01
CCDC87Q9NVE4 RNU7-6P-201ENST00000516845 62 ntBASIC2.5□□□□□ -2.01
CCDC87Q9NVE4 AC068339.1-201ENST00000526965 141 ntBASIC2.5□□□□□ -2.01
CCDC87Q9NVE4 MIR5009-201ENST00000578736 100 ntBASIC2.5□□□□□ -2.01
CCDC87Q9NVE4 AL773524.1-201ENST00000614065 229 ntBASIC2.5□□□□□ -2.01
CCDC87Q9NVE4 MIR6717-201ENST00000622747 73 ntBASIC2.5□□□□□ -2.01
CCDC87Q9NVE4 MIR6841-201ENST00000637129 72 ntBASIC2.5□□□□□ -2.01
CCDC87Q9NVE4 AC080100.1-201ENST00000624239 5356 ntBASIC2.49□□□□□ -2.01
CCDC87Q9NVE4 SNORA16B-201ENST00000364674 135 ntBASIC2.49□□□□□ -2.01
CCDC87Q9NVE4 Y_RNA.495-201ENST00000384435 112 ntBASIC2.49□□□□□ -2.01
CCDC87Q9NVE4 MIR1912-201ENST00000410389 80 ntBASIC2.49□□□□□ -2.01
CCDC87Q9NVE4 AC244636.1-201ENST00000421152 228 ntBASIC2.49□□□□□ -2.01
CCDC87Q9NVE4 AC003989.2-201ENST00000440224 169 ntBASIC2.49□□□□□ -2.01
CCDC87Q9NVE4 SNORD13-201ENST00000459299 104 ntBASIC2.49□□□□□ -2.01
CCDC87Q9NVE4 RNA5SP445-201ENST00000515889 115 ntBASIC2.49□□□□□ -2.01
CCDC87Q9NVE4 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.49□□□□□ -2.01
CCDC87Q9NVE4 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
CCDC87Q9NVE4 MIR450A1-201ENST00000362262 91 ntBASIC2.48□□□□□ -2.01
CCDC87Q9NVE4 U8.6-201ENST00000364939 135 ntBASIC2.48□□□□□ -2.01
CCDC87Q9NVE4 Y_RNA.344-201ENST00000365381 112 ntBASIC2.48□□□□□ -2.01
CCDC87Q9NVE4 MIR520C-201ENST00000385005 87 ntBASIC2.48□□□□□ -2.01
CCDC87Q9NVE4 RNA5SP89-201ENST00000410300 108 ntBASIC2.48□□□□□ -2.01
CCDC87Q9NVE4 RNU4-69P-201ENST00000410677 143 ntBASIC2.48□□□□□ -2.01
CCDC87Q9NVE4 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC2.48□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms