Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RNU6-235P-201ENST00000362644 107 ntBASIC1.81□□□□□ -2.12
TRIM39Q9HCM9 RNU6-508P-201ENST00000363231 103 ntBASIC1.81□□□□□ -2.12
TRIM39Q9HCM9 SNORA1.1-201ENST00000364671 133 ntBASIC1.81□□□□□ -2.12
TRIM39Q9HCM9 Y_RNA.280-201ENST00000364765 112 ntBASIC1.81□□□□□ -2.12
TRIM39Q9HCM9 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.81□□□□□ -2.12
TRIM39Q9HCM9 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC1.81□□□□□ -2.12
TRIM39Q9HCM9 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.81□□□□□ -2.12
TRIM39Q9HCM9 MIR3683-201ENST00000580847 82 ntBASIC1.81□□□□□ -2.12
TRIM39Q9HCM9 AC021443.1-201ENST00000604478 211 ntBASIC1.81□□□□□ -2.12
TRIM39Q9HCM9 AL020996.3-201ENST00000606617 222 ntBASIC1.81□□□□□ -2.12
TRIM39Q9HCM9 AL096861.1-201ENST00000610899 123 ntBASIC1.81□□□□□ -2.12
TRIM39Q9HCM9 MIR6845-201ENST00000613182 61 ntBASIC1.81□□□□□ -2.12
TRIM39Q9HCM9 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.81□□□□□ -2.12
TRIM39Q9HCM9 Y_RNA.127-201ENST00000363386 109 ntBASIC1.8□□□□□ -2.12
TRIM39Q9HCM9 Y_RNA.218-201ENST00000364218 104 ntBASIC1.8□□□□□ -2.12
TRIM39Q9HCM9 SNORA16.1-201ENST00000364597 132 ntBASIC1.8□□□□□ -2.12
TRIM39Q9HCM9 RNU6-1081P-201ENST00000384537 107 ntBASIC1.8□□□□□ -2.12
TRIM39Q9HCM9 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
TRIM39Q9HCM9 RNU6-1319P-201ENST00000390855 104 ntBASIC1.8□□□□□ -2.12
TRIM39Q9HCM9 RNU6-747P-201ENST00000390928 104 ntBASIC1.8□□□□□ -2.12
TRIM39Q9HCM9 RNU6-241P-201ENST00000391148 104 ntBASIC1.8□□□□□ -2.12
TRIM39Q9HCM9 RNU6-177P-201ENST00000411257 104 ntBASIC1.8□□□□□ -2.12
TRIM39Q9HCM9 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.8□□□□□ -2.12
TRIM39Q9HCM9 AC003989.2-201ENST00000440224 169 ntBASIC1.8□□□□□ -2.12
TRIM39Q9HCM9 AL133373.1-201ENST00000497098 94 ntBASIC1.8□□□□□ -2.12
TRIM39Q9HCM9 RNU6-1061P-201ENST00000516530 99 ntBASIC1.8□□□□□ -2.12
TRIM39Q9HCM9 RNU6-902P-201ENST00000517212 91 ntBASIC1.8□□□□□ -2.12
TRIM39Q9HCM9 CYP3A52P-201ENST00000563326 91 ntBASIC1.8□□□□□ -2.12
TRIM39Q9HCM9 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.8□□□□□ -2.12
TRIM39Q9HCM9 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
TRIM39Q9HCM9 RNU4-16P-201ENST00000364737 141 ntBASIC1.79□□□□□ -2.12
TRIM39Q9HCM9 Y_RNA.354-201ENST00000365448 111 ntBASIC1.79□□□□□ -2.12
TRIM39Q9HCM9 RNU6-22P-201ENST00000384355 107 ntBASIC1.79□□□□□ -2.12
TRIM39Q9HCM9 AL022718.1-201ENST00000412004 84 ntBASIC1.79□□□□□ -2.12
TRIM39Q9HCM9 RN7SKP19-201ENST00000516016 252 ntBASIC1.79□□□□□ -2.12
TRIM39Q9HCM9 RNU6-313P-201ENST00000516317 112 ntBASIC1.79□□□□□ -2.12
TRIM39Q9HCM9 RNU6-479P-201ENST00000516348 105 ntBASIC1.79□□□□□ -2.12
TRIM39Q9HCM9 RN7SKP88-201ENST00000516847 250 ntBASIC1.79□□□□□ -2.12
TRIM39Q9HCM9 RNU6-1234P-201ENST00000516877 103 ntBASIC1.79□□□□□ -2.12
TRIM39Q9HCM9 AC024614.2-201ENST00000577584 372 ntBASIC1.79□□□□□ -2.12
TRIM39Q9HCM9 7SK.8-201ENST00000612110 250 ntBASIC1.79□□□□□ -2.12
TRIM39Q9HCM9 7SK.11-201ENST00000615477 250 ntBASIC1.79□□□□□ -2.12
TRIM39Q9HCM9 7SK.13-201ENST00000622040 250 ntBASIC1.79□□□□□ -2.12
TRIM39Q9HCM9 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
TRIM39Q9HCM9 Y_RNA.366-201ENST00000365540 102 ntBASIC1.78□□□□□ -2.12
TRIM39Q9HCM9 MIR9-3-201ENST00000385084 90 ntBASIC1.78□□□□□ -2.12
TRIM39Q9HCM9 RNU6-913P-201ENST00000390913 95 ntBASIC1.78□□□□□ -2.12
TRIM39Q9HCM9 RPS3AP1-201ENST00000413190 320 ntBASIC1.78□□□□□ -2.12
TRIM39Q9HCM9 RPL31P63-201ENST00000422565 375 ntBASIC1.78□□□□□ -2.12
TRIM39Q9HCM9 RPS27P16-201ENST00000425758 201 ntBASIC1.78□□□□□ -2.12
TRIM39Q9HCM9 RNU6-1333P-201ENST00000516162 93 ntBASIC1.78□□□□□ -2.12
TRIM39Q9HCM9 MIR548AI-201ENST00000579940 88 ntBASIC1.78□□□□□ -2.12
TRIM39Q9HCM9 MIR4524B-201ENST00000581569 115 ntBASIC1.78□□□□□ -2.12
TRIM39Q9HCM9 MIR4305-201ENST00000583252 102 ntBASIC1.78□□□□□ -2.12
TRIM39Q9HCM9 MIR3192-201ENST00000584920 77 ntBASIC1.78□□□□□ -2.12
TRIM39Q9HCM9 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.78□□□□□ -2.12
TRIM39Q9HCM9 RNU6-1154P-201ENST00000391001 104 ntBASIC1.77□□□□□ -2.13
TRIM39Q9HCM9 RNA5SP136-201ENST00000410906 107 ntBASIC1.77□□□□□ -2.13
TRIM39Q9HCM9 AL591806.2-201ENST00000433122 173 ntBASIC1.77□□□□□ -2.13
TRIM39Q9HCM9 AC009474.2-201ENST00000451383 136 ntBASIC1.77□□□□□ -2.13
TRIM39Q9HCM9 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.77□□□□□ -2.13
TRIM39Q9HCM9 RPS29P11-201ENST00000496507 171 ntBASIC1.77□□□□□ -2.13
TRIM39Q9HCM9 MIR548AO-201ENST00000579992 96 ntBASIC1.77□□□□□ -2.13
TRIM39Q9HCM9 AC108081.1-201ENST00000604358 221 ntBASIC1.77□□□□□ -2.13
TRIM39Q9HCM9 MIR6717-201ENST00000622747 73 ntBASIC1.77□□□□□ -2.13
TRIM39Q9HCM9 RNU2-51P-201ENST00000410708 197 ntBASIC1.76□□□□□ -2.13
TRIM39Q9HCM9 Y_RNA.617-201ENST00000410920 90 ntBASIC1.76□□□□□ -2.13
TRIM39Q9HCM9 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.76□□□□□ -2.13
TRIM39Q9HCM9 snoU13.23-201ENST00000458863 104 ntBASIC1.76□□□□□ -2.13
TRIM39Q9HCM9 RNU7-164P-201ENST00000459221 62 ntBASIC1.76□□□□□ -2.13
TRIM39Q9HCM9 RNU7-45P-201ENST00000459460 63 ntBASIC1.76□□□□□ -2.13
TRIM39Q9HCM9 RNU6-772P-201ENST00000516042 105 ntBASIC1.76□□□□□ -2.13
TRIM39Q9HCM9 MIR4285-201ENST00000581001 85 ntBASIC1.76□□□□□ -2.13
TRIM39Q9HCM9 AC084768.2-201ENST00000622736 221 ntBASIC1.76□□□□□ -2.13
TRIM39Q9HCM9 Y_RNA.430-201ENST00000384081 110 ntBASIC1.75□□□□□ -2.13
TRIM39Q9HCM9 AC245047.7-201ENST00000440265 293 ntBASIC1.75□□□□□ -2.13
TRIM39Q9HCM9 MIR4419B-201ENST00000577260 68 ntBASIC1.75□□□□□ -2.13
TRIM39Q9HCM9 MIR8055-201ENST00000610739 97 ntBASIC1.75□□□□□ -2.13
TRIM39Q9HCM9 Z97988.1-201ENST00000637697 135 ntBASIC1.75□□□□□ -2.13
TRIM39Q9HCM9 SNORA22.1-201ENST00000362701 134 ntBASIC1.74□□□□□ -2.13
TRIM39Q9HCM9 SNORD58C-201ENST00000365223 64 ntBASIC1.74□□□□□ -2.13
TRIM39Q9HCM9 RNU6-396P-201ENST00000365369 105 ntBASIC1.74□□□□□ -2.13
TRIM39Q9HCM9 Y_RNA.346-201ENST00000365385 112 ntBASIC1.74□□□□□ -2.13
TRIM39Q9HCM9 SNORD38B-201ENST00000384690 67 ntBASIC1.74□□□□□ -2.13
TRIM39Q9HCM9 MIR759-201ENST00000390224 91 ntBASIC1.74□□□□□ -2.13
TRIM39Q9HCM9 RNU6-1168P-201ENST00000390831 104 ntBASIC1.74□□□□□ -2.13
TRIM39Q9HCM9 RNA5SP144-201ENST00000410846 116 ntBASIC1.74□□□□□ -2.13
TRIM39Q9HCM9 RNU7-107P-201ENST00000459121 61 ntBASIC1.74□□□□□ -2.13
TRIM39Q9HCM9 AC108210.2-201ENST00000503681 201 ntBASIC1.74□□□□□ -2.13
TRIM39Q9HCM9 RNU6-659P-201ENST00000516454 104 ntBASIC1.74□□□□□ -2.13
TRIM39Q9HCM9 Y_RNA.712-201ENST00000517011 92 ntBASIC1.74□□□□□ -2.13
TRIM39Q9HCM9 RNU6-548P-201ENST00000517083 115 ntBASIC1.74□□□□□ -2.13
TRIM39Q9HCM9 AC015712.3-201ENST00000559380 164 ntBASIC1.74□□□□□ -2.13
TRIM39Q9HCM9 HSPE1P19-201ENST00000603327 295 ntBASIC1.74□□□□□ -2.13
TRIM39Q9HCM9 AL365222.1-201ENST00000614661 98 ntBASIC1.74□□□□□ -2.13
TRIM39Q9HCM9 SNORD38B-202ENST00000625943 69 ntBASIC1.74□□□□□ -2.13
TRIM39Q9HCM9 AL161722.3-201ENST00000605789 2983 ntBASIC1.74□□□□□ -2.13
TRIM39Q9HCM9 MIR103A2-201ENST00000362154 78 ntBASIC1.73□□□□□ -2.13
TRIM39Q9HCM9 SNORD48-201ENST00000364953 64 ntBASIC1.73□□□□□ -2.13
TRIM39Q9HCM9 SNORA26.6-201ENST00000391256 115 ntBASIC1.73□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 196.8 ms