Protein–RNA interactions for Protein: Q9H9Y2

RPF1, Ribosome production factor 1, humanhuman

Known RBP Predictions only

Length 349 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPF1Q9H9Y2 RNU6-580P-201ENST00000365159 107 ntBASIC0.75□□□□□ -2.29
RPF1Q9H9Y2 RNU6-342P-201ENST00000384521 104 ntBASIC0.75□□□□□ -2.29
RPF1Q9H9Y2 MIR100-201ENST00000385259 80 ntBASIC0.75□□□□□ -2.29
RPF1Q9H9Y2 RNU6-994P-201ENST00000410507 111 ntBASIC0.75□□□□□ -2.29
RPF1Q9H9Y2 MTCYBP9-201ENST00000431021 303 ntBASIC0.75□□□□□ -2.29
RPF1Q9H9Y2 RNU6-1132P-201ENST00000459214 107 ntBASIC0.75□□□□□ -2.29
RPF1Q9H9Y2 U7.7-201ENST00000459276 60 ntBASIC0.75□□□□□ -2.29
RPF1Q9H9Y2 RNA5SP153-201ENST00000516498 76 ntBASIC0.75□□□□□ -2.29
RPF1Q9H9Y2 AL353765.1-201ENST00000605514 183 ntBASIC0.75□□□□□ -2.29
RPF1Q9H9Y2 AL442067.1-201ENST00000613261 223 ntBASIC0.75□□□□□ -2.29
RPF1Q9H9Y2 PVT1_3.1-201ENST00000620853 95 ntBASIC0.75□□□□□ -2.29
RPF1Q9H9Y2 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.75□□□□□ -2.29
RPF1Q9H9Y2 Y_RNA.199-201ENST00000364014 102 ntBASIC0.74□□□□□ -2.29
RPF1Q9H9Y2 Y_RNA.292-201ENST00000364904 97 ntBASIC0.74□□□□□ -2.29
RPF1Q9H9Y2 SNORA1-201ENST00000384107 130 ntBASIC0.74□□□□□ -2.29
RPF1Q9H9Y2 Y_RNA.562-201ENST00000384695 113 ntBASIC0.74□□□□□ -2.29
RPF1Q9H9Y2 MT-TN-201ENST00000387400 73 ntBASIC0.74□□□□□ -2.29
RPF1Q9H9Y2 HMGN1P33-201ENST00000432945 451 ntBASIC0.74□□□□□ -2.29
RPF1Q9H9Y2 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.74□□□□□ -2.29
RPF1Q9H9Y2 AL138752.1-201ENST00000452964 351 ntBASIC0.74□□□□□ -2.29
RPF1Q9H9Y2 RNU7-73P-201ENST00000458743 63 ntBASIC0.74□□□□□ -2.29
RPF1Q9H9Y2 RPS29P24-201ENST00000486345 171 ntBASIC0.74□□□□□ -2.29
RPF1Q9H9Y2 RNA5SP436-201ENST00000516020 115 ntBASIC0.74□□□□□ -2.29
RPF1Q9H9Y2 RNY3P16-201ENST00000516338 101 ntBASIC0.74□□□□□ -2.29
RPF1Q9H9Y2 RNU6-1110P-201ENST00000516462 101 ntBASIC0.74□□□□□ -2.29
RPF1Q9H9Y2 AC025627.3-201ENST00000582078 182 ntBASIC0.74□□□□□ -2.29
RPF1Q9H9Y2 MIR8055-201ENST00000610739 97 ntBASIC0.74□□□□□ -2.29
RPF1Q9H9Y2 MIR376A2-201ENST00000636782 80 ntBASIC0.74□□□□□ -2.29
RPF1Q9H9Y2 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.74□□□□□ -2.29
RPF1Q9H9Y2 MIR377-201ENST00000362145 69 ntBASIC0.73□□□□□ -2.29
RPF1Q9H9Y2 Y_RNA.288-201ENST00000364854 92 ntBASIC0.73□□□□□ -2.29
RPF1Q9H9Y2 RNU4-17P-201ENST00000365598 141 ntBASIC0.73□□□□□ -2.29
RPF1Q9H9Y2 MIR1827-201ENST00000408549 66 ntBASIC0.73□□□□□ -2.29
RPF1Q9H9Y2 SNORD99-201ENST00000408612 74 ntBASIC0.73□□□□□ -2.29
RPF1Q9H9Y2 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.73□□□□□ -2.29
RPF1Q9H9Y2 RPS26P5-201ENST00000418544 335 ntBASIC0.73□□□□□ -2.29
RPF1Q9H9Y2 MTND1P19-201ENST00000511780 315 ntBASIC0.73□□□□□ -2.29
RPF1Q9H9Y2 uc_338.6-201ENST00000613544 171 ntBASIC0.73□□□□□ -2.29
RPF1Q9H9Y2 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.73□□□□□ -2.29
RPF1Q9H9Y2 Y_RNA.262-201ENST00000364641 102 ntBASIC0.72□□□□□ -2.29
RPF1Q9H9Y2 Y_RNA.440-201ENST00000384120 114 ntBASIC0.72□□□□□ -2.29
RPF1Q9H9Y2 RNU6-110P-201ENST00000384508 104 ntBASIC0.72□□□□□ -2.29
RPF1Q9H9Y2 MIR146A-201ENST00000385201 99 ntBASIC0.72□□□□□ -2.29
RPF1Q9H9Y2 SNORD77.3-201ENST00000391113 65 ntBASIC0.72□□□□□ -2.29
RPF1Q9H9Y2 SNORA26-201ENST00000391286 122 ntBASIC0.72□□□□□ -2.29
RPF1Q9H9Y2 RNU6-1190P-201ENST00000410811 104 ntBASIC0.72□□□□□ -2.29
RPF1Q9H9Y2 AC015818.7-201ENST00000428754 109 ntBASIC0.72□□□□□ -2.29
RPF1Q9H9Y2 AC087499.7-201ENST00000441958 109 ntBASIC0.72□□□□□ -2.29
RPF1Q9H9Y2 AC067940.1-201ENST00000458411 300 ntBASIC0.72□□□□□ -2.29
RPF1Q9H9Y2 AC113410.1-201ENST00000505029 247 ntBASIC0.72□□□□□ -2.29
RPF1Q9H9Y2 MIR4264-201ENST00000583520 66 ntBASIC0.72□□□□□ -2.29
RPF1Q9H9Y2 AC104465.1-201ENST00000611365 139 ntBASIC0.72□□□□□ -2.29
RPF1Q9H9Y2 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.71□□□□□ -2.3
RPF1Q9H9Y2 SNORD83.1-201ENST00000411362 77 ntBASIC0.71□□□□□ -2.3
RPF1Q9H9Y2 AL606490.4-201ENST00000423117 127 ntBASIC0.71□□□□□ -2.3
RPF1Q9H9Y2 MTND5P15-201ENST00000434246 349 ntBASIC0.71□□□□□ -2.3
RPF1Q9H9Y2 Y_RNA.668-201ENST00000516233 93 ntBASIC0.71□□□□□ -2.3
RPF1Q9H9Y2 RNA5SP480-201ENST00000516840 109 ntBASIC0.71□□□□□ -2.3
RPF1Q9H9Y2 AC004812.1-201ENST00000540773 146 ntBASIC0.71□□□□□ -2.3
RPF1Q9H9Y2 AP000753.3-201ENST00000604083 169 ntBASIC0.71□□□□□ -2.3
RPF1Q9H9Y2 Z97988.1-201ENST00000637697 135 ntBASIC0.71□□□□□ -2.3
RPF1Q9H9Y2 Y_RNA.162-201ENST00000363683 102 ntBASIC0.7□□□□□ -2.3
RPF1Q9H9Y2 SNORD27-201ENST00000363981 72 ntBASIC0.7□□□□□ -2.3
RPF1Q9H9Y2 RNU6-1189P-201ENST00000383958 107 ntBASIC0.7□□□□□ -2.3
RPF1Q9H9Y2 Y_RNA.477-201ENST00000384352 108 ntBASIC0.7□□□□□ -2.3
RPF1Q9H9Y2 Y_RNA.539-201ENST00000384635 107 ntBASIC0.7□□□□□ -2.3
RPF1Q9H9Y2 MIR548H3-201ENST00000408771 118 ntBASIC0.7□□□□□ -2.3
RPF1Q9H9Y2 RNU6-998P-201ENST00000515894 101 ntBASIC0.7□□□□□ -2.3
RPF1Q9H9Y2 RNU7-53P-201ENST00000516705 60 ntBASIC0.7□□□□□ -2.3
RPF1Q9H9Y2 MIR6740-201ENST00000618268 113 ntBASIC0.7□□□□□ -2.3
RPF1Q9H9Y2 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.69□□□□□ -2.3
RPF1Q9H9Y2 Y_RNA.36-201ENST00000362602 112 ntBASIC0.69□□□□□ -2.3
RPF1Q9H9Y2 Y_RNA.308-201ENST00000365043 101 ntBASIC0.69□□□□□ -2.3
RPF1Q9H9Y2 RNY4P28-201ENST00000365281 93 ntBASIC0.69□□□□□ -2.3
RPF1Q9H9Y2 Y_RNA.410-201ENST00000383992 113 ntBASIC0.69□□□□□ -2.3
RPF1Q9H9Y2 RNU2-11P-201ENST00000459191 187 ntBASIC0.69□□□□□ -2.3
RPF1Q9H9Y2 RNU7-96P-201ENST00000459535 64 ntBASIC0.69□□□□□ -2.3
RPF1Q9H9Y2 Y_RNA.680-201ENST00000516441 93 ntBASIC0.69□□□□□ -2.3
RPF1Q9H9Y2 MIR3129-201ENST00000581095 76 ntBASIC0.69□□□□□ -2.3
RPF1Q9H9Y2 AL136317.1-201ENST00000612653 226 ntBASIC0.69□□□□□ -2.3
RPF1Q9H9Y2 MIR6513-201ENST00000621188 64 ntBASIC0.69□□□□□ -2.3
RPF1Q9H9Y2 MIR1-1-201ENST00000362147 71 ntBASIC0.68□□□□□ -2.3
RPF1Q9H9Y2 MIR342-201ENST00000362212 99 ntBASIC0.68□□□□□ -2.3
RPF1Q9H9Y2 Y_RNA.7-201ENST00000362352 102 ntBASIC0.68□□□□□ -2.3
RPF1Q9H9Y2 RNU6-934P-201ENST00000365154 107 ntBASIC0.68□□□□□ -2.3
RPF1Q9H9Y2 RNU6-728P-201ENST00000365375 104 ntBASIC0.68□□□□□ -2.3
RPF1Q9H9Y2 Y_RNA.540-201ENST00000384638 111 ntBASIC0.68□□□□□ -2.3
RPF1Q9H9Y2 RNU6-493P-201ENST00000391321 108 ntBASIC0.68□□□□□ -2.3
RPF1Q9H9Y2 RNU6-602P-201ENST00000411155 105 ntBASIC0.68□□□□□ -2.3
RPF1Q9H9Y2 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC0.68□□□□□ -2.3
RPF1Q9H9Y2 RNU7-62P-201ENST00000458856 62 ntBASIC0.68□□□□□ -2.3
RPF1Q9H9Y2 RNU6-1045P-201ENST00000516321 107 ntBASIC0.68□□□□□ -2.3
RPF1Q9H9Y2 Y_RNA.65-201ENST00000362846 100 ntBASIC0.67□□□□□ -2.3
RPF1Q9H9Y2 SNORD38B-201ENST00000384690 67 ntBASIC0.67□□□□□ -2.3
RPF1Q9H9Y2 MIR216A-201ENST00000385063 110 ntBASIC0.67□□□□□ -2.3
RPF1Q9H9Y2 SNORD105-201ENST00000386910 85 ntBASIC0.67□□□□□ -2.3
RPF1Q9H9Y2 SNORD58.1-201ENST00000391313 66 ntBASIC0.67□□□□□ -2.3
RPF1Q9H9Y2 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.67□□□□□ -2.3
RPF1Q9H9Y2 MIR548I3-201ENST00000408378 149 ntBASIC0.67□□□□□ -2.3
RPF1Q9H9Y2 RNU4-43P-201ENST00000410628 137 ntBASIC0.67□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 230.6 ms