Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AL121655.1-201ENST00000605811 308 ntBASIC-0.23□□□□□ -2.45
USP42Q9H9J4 AL662814.1-201ENST00000617364 121 ntBASIC-0.23□□□□□ -2.45
USP42Q9H9J4 TUG1_4.1-201ENST00000619464 181 ntBASIC-0.23□□□□□ -2.45
USP42Q9H9J4 AL627230.5-201ENST00000619807 58 ntBASIC-0.23□□□□□ -2.45
USP42Q9H9J4 MIR6717-201ENST00000622747 73 ntBASIC-0.23□□□□□ -2.45
USP42Q9H9J4 Y_RNA.7-201ENST00000362352 102 ntBASIC-0.24□□□□□ -2.45
USP42Q9H9J4 RNU6-403P-201ENST00000363163 104 ntBASIC-0.24□□□□□ -2.45
USP42Q9H9J4 Y_RNA.222-201ENST00000364264 102 ntBASIC-0.24□□□□□ -2.45
USP42Q9H9J4 Y_RNA.463-201ENST00000384271 102 ntBASIC-0.24□□□□□ -2.45
USP42Q9H9J4 SNORD116-29-201ENST00000384516 83 ntBASIC-0.24□□□□□ -2.45
USP42Q9H9J4 SNORD116-4-201ENST00000384733 96 ntBASIC-0.24□□□□□ -2.45
USP42Q9H9J4 MIR604-201ENST00000384880 94 ntBASIC-0.24□□□□□ -2.45
USP42Q9H9J4 RNU6-130P-201ENST00000411112 103 ntBASIC-0.24□□□□□ -2.45
USP42Q9H9J4 RNU7-96P-201ENST00000459535 64 ntBASIC-0.24□□□□□ -2.45
USP42Q9H9J4 AC104692.1-201ENST00000472406 90 ntBASIC-0.24□□□□□ -2.45
USP42Q9H9J4 Y_RNA.655-201ENST00000515919 96 ntBASIC-0.24□□□□□ -2.45
USP42Q9H9J4 RNU6-559P-201ENST00000516151 98 ntBASIC-0.24□□□□□ -2.45
USP42Q9H9J4 RNU6-764P-201ENST00000516396 105 ntBASIC-0.24□□□□□ -2.45
USP42Q9H9J4 RNU6-782P-201ENST00000516852 104 ntBASIC-0.24□□□□□ -2.45
USP42Q9H9J4 MTND5P34-201ENST00000568888 325 ntBASIC-0.24□□□□□ -2.45
USP42Q9H9J4 AL133255.1-201ENST00000606374 441 ntBASIC-0.24□□□□□ -2.45
USP42Q9H9J4 AC244669.1-204ENST00000621564 178 ntBASIC-0.24□□□□□ -2.45
USP42Q9H9J4 MTND4LP32-201ENST00000636111 270 ntBASIC-0.24□□□□□ -2.45
USP42Q9H9J4 RNU6-888P-201ENST00000363010 101 ntBASIC-0.25□□□□□ -2.45
USP42Q9H9J4 RNU4-73P-201ENST00000363164 141 ntBASIC-0.25□□□□□ -2.45
USP42Q9H9J4 Y_RNA.174-201ENST00000363781 105 ntBASIC-0.25□□□□□ -2.45
USP42Q9H9J4 RNU6-1229P-201ENST00000364295 107 ntBASIC-0.25□□□□□ -2.45
USP42Q9H9J4 RNY3-201ENST00000365484 102 ntBASIC-0.25□□□□□ -2.45
USP42Q9H9J4 SNORD24-201ENST00000383884 75 ntBASIC-0.25□□□□□ -2.45
USP42Q9H9J4 RNU6-1040P-201ENST00000383974 107 ntBASIC-0.25□□□□□ -2.45
USP42Q9H9J4 MTCO2P24-201ENST00000515611 426 ntBASIC-0.25□□□□□ -2.45
USP42Q9H9J4 RNU6-765P-201ENST00000516916 99 ntBASIC-0.25□□□□□ -2.45
USP42Q9H9J4 MIR3152-201ENST00000579801 74 ntBASIC-0.25□□□□□ -2.45
USP42Q9H9J4 MIR4639-201ENST00000584938 69 ntBASIC-0.25□□□□□ -2.45
USP42Q9H9J4 PART1_1.1-201ENST00000611761 217 ntBASIC-0.25□□□□□ -2.45
USP42Q9H9J4 AC104985.2-201ENST00000620598 500 ntBASIC-0.25□□□□□ -2.45
USP42Q9H9J4 RNU6-161P-201ENST00000363051 106 ntBASIC-0.26□□□□□ -2.45
USP42Q9H9J4 Y_RNA.160-201ENST00000363677 92 ntBASIC-0.26□□□□□ -2.45
USP42Q9H9J4 Y_RNA.439-201ENST00000384119 94 ntBASIC-0.26□□□□□ -2.45
USP42Q9H9J4 Y_RNA.440-201ENST00000384120 114 ntBASIC-0.26□□□□□ -2.45
USP42Q9H9J4 Y_RNA.536-201ENST00000384621 113 ntBASIC-0.26□□□□□ -2.45
USP42Q9H9J4 RNU7-159P-201ENST00000459284 62 ntBASIC-0.26□□□□□ -2.45
USP42Q9H9J4 MRPS35P2-201ENST00000508242 191 ntBASIC-0.26□□□□□ -2.45
USP42Q9H9J4 RNU6-397P-201ENST00000516226 104 ntBASIC-0.26□□□□□ -2.45
USP42Q9H9J4 SNORD58B-201ENST00000607313 66 ntBASIC-0.26□□□□□ -2.45
USP42Q9H9J4 AC013791.1-201ENST00000616619 62 ntBASIC-0.26□□□□□ -2.45
USP42Q9H9J4 AC073869.6-201ENST00000640656 341 ntBASIC-0.26□□□□□ -2.45
USP42Q9H9J4 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC-0.27□□□□□ -2.45
USP42Q9H9J4 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC-0.27□□□□□ -2.45
USP42Q9H9J4 MIR342-201ENST00000362212 99 ntBASIC-0.27□□□□□ -2.45
USP42Q9H9J4 MIR101-1-201ENST00000362265 75 ntBASIC-0.27□□□□□ -2.45
USP42Q9H9J4 Y_RNA.66-201ENST00000362862 102 ntBASIC-0.27□□□□□ -2.45
USP42Q9H9J4 Y_RNA.80-201ENST00000362996 102 ntBASIC-0.27□□□□□ -2.45
USP42Q9H9J4 RNY4P3-201ENST00000365254 95 ntBASIC-0.27□□□□□ -2.45
USP42Q9H9J4 Y_RNA.485-201ENST00000384395 102 ntBASIC-0.27□□□□□ -2.45
USP42Q9H9J4 Y_RNA.539-201ENST00000384635 107 ntBASIC-0.27□□□□□ -2.45
USP42Q9H9J4 Y_RNA.552-201ENST00000384665 112 ntBASIC-0.27□□□□□ -2.45
USP42Q9H9J4 RNU6-1248P-201ENST00000391096 64 ntBASIC-0.27□□□□□ -2.45
USP42Q9H9J4 MTATP6P26-201ENST00000445926 662 ntBASIC-0.27□□□□□ -2.45
USP42Q9H9J4 RPL39P25-201ENST00000449384 154 ntBASIC-0.27□□□□□ -2.45
USP42Q9H9J4 Y_RNA.631-201ENST00000459607 101 ntBASIC-0.27□□□□□ -2.45
USP42Q9H9J4 SEPT14P8-201ENST00000508026 178 ntBASIC-0.27□□□□□ -2.45
USP42Q9H9J4 RNU6-135P-201ENST00000516769 101 ntBASIC-0.27□□□□□ -2.45
USP42Q9H9J4 AC100767.1-201ENST00000528178 123 ntBASIC-0.27□□□□□ -2.45
USP42Q9H9J4 AC141846.1-201ENST00000568348 142 ntBASIC-0.27□□□□□ -2.45
USP42Q9H9J4 AC138869.1-201ENST00000568623 124 ntBASIC-0.27□□□□□ -2.45
USP42Q9H9J4 AC113139.1-201ENST00000605049 239 ntBASIC-0.27□□□□□ -2.45
USP42Q9H9J4 AC084781.2-201ENST00000615568 161 ntBASIC-0.27□□□□□ -2.45
USP42Q9H9J4 MIR376A2-201ENST00000636782 80 ntBASIC-0.27□□□□□ -2.45
USP42Q9H9J4 Y_RNA.6-201ENST00000362350 114 ntBASIC-0.28□□□□□ -2.45
USP42Q9H9J4 Y_RNA.14-201ENST00000362415 103 ntBASIC-0.28□□□□□ -2.45
USP42Q9H9J4 SNORD114-28-201ENST00000363610 72 ntBASIC-0.28□□□□□ -2.45
USP42Q9H9J4 RNA5SP245-201ENST00000364239 121 ntBASIC-0.28□□□□□ -2.45
USP42Q9H9J4 Y_RNA.428-201ENST00000384078 102 ntBASIC-0.28□□□□□ -2.45
USP42Q9H9J4 RNU6-102P-201ENST00000384485 104 ntBASIC-0.28□□□□□ -2.45
USP42Q9H9J4 RNU6-535P-201ENST00000384722 107 ntBASIC-0.28□□□□□ -2.45
USP42Q9H9J4 MIR501-201ENST00000390204 84 ntBASIC-0.28□□□□□ -2.45
USP42Q9H9J4 HMGN2P22-201ENST00000427588 175 ntBASIC-0.28□□□□□ -2.45
USP42Q9H9J4 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC-0.28□□□□□ -2.45
USP42Q9H9J4 RNU7-165P-201ENST00000458864 60 ntBASIC-0.28□□□□□ -2.45
USP42Q9H9J4 Y_RNA.661-201ENST00000516003 99 ntBASIC-0.28□□□□□ -2.45
USP42Q9H9J4 SNORD116.3-201ENST00000517176 78 ntBASIC-0.28□□□□□ -2.45
USP42Q9H9J4 MIR4662B-201ENST00000579498 81 ntBASIC-0.28□□□□□ -2.45
USP42Q9H9J4 AC092447.9-201ENST00000603395 144 ntBASIC-0.28□□□□□ -2.45
USP42Q9H9J4 C8orf59P2-201ENST00000603441 271 ntBASIC-0.28□□□□□ -2.45
USP42Q9H9J4 AC108676.2-201ENST00000605225 163 ntBASIC-0.28□□□□□ -2.45
USP42Q9H9J4 SNORD113-5-201ENST00000607261 78 ntBASIC-0.28□□□□□ -2.45
USP42Q9H9J4 AC025253.1-201ENST00000613623 543 ntBASIC-0.28□□□□□ -2.45
USP42Q9H9J4 RNU6-653P-201ENST00000363074 106 ntBASIC-0.29□□□□□ -2.46
USP42Q9H9J4 Y_RNA.136-201ENST00000363444 102 ntBASIC-0.29□□□□□ -2.46
USP42Q9H9J4 RNA5SP368-201ENST00000364298 116 ntBASIC-0.29□□□□□ -2.46
USP42Q9H9J4 RNU6-652P-201ENST00000365488 107 ntBASIC-0.29□□□□□ -2.46
USP42Q9H9J4 SNORA72.6-201ENST00000384520 129 ntBASIC-0.29□□□□□ -2.46
USP42Q9H9J4 MIR215-201ENST00000384858 110 ntBASIC-0.29□□□□□ -2.46
USP42Q9H9J4 RNU6-269P-201ENST00000391077 97 ntBASIC-0.29□□□□□ -2.46
USP42Q9H9J4 RNY4P36-201ENST00000391116 96 ntBASIC-0.29□□□□□ -2.46
USP42Q9H9J4 RNA5SP237-201ENST00000410414 113 ntBASIC-0.29□□□□□ -2.46
USP42Q9H9J4 RNU6-1203P-201ENST00000410703 110 ntBASIC-0.29□□□□□ -2.46
USP42Q9H9J4 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC-0.29□□□□□ -2.46
USP42Q9H9J4 U8.20-201ENST00000459445 131 ntBASIC-0.29□□□□□ -2.46
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms