Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 SNORA51.10-201ENST00000384418 136 ntBASIC1.87□□□□□ -2.11
PCIF1Q9H4Z3 RNU7-45P-201ENST00000459460 63 ntBASIC1.87□□□□□ -2.11
PCIF1Q9H4Z3 RNU7-41P-201ENST00000515917 61 ntBASIC1.87□□□□□ -2.11
PCIF1Q9H4Z3 RN7SKP19-201ENST00000516016 252 ntBASIC1.87□□□□□ -2.11
PCIF1Q9H4Z3 Y_RNA.712-201ENST00000517011 92 ntBASIC1.87□□□□□ -2.11
PCIF1Q9H4Z3 RNU6-548P-201ENST00000517083 115 ntBASIC1.87□□□□□ -2.11
PCIF1Q9H4Z3 AC019176.1-201ENST00000518519 225 ntBASIC1.87□□□□□ -2.11
PCIF1Q9H4Z3 AC133485.4-201ENST00000561835 220 ntBASIC1.87□□□□□ -2.11
PCIF1Q9H4Z3 AC138907.4-201ENST00000570107 226 ntBASIC1.87□□□□□ -2.11
PCIF1Q9H4Z3 MIR3618-201ENST00000580330 88 ntBASIC1.87□□□□□ -2.11
PCIF1Q9H4Z3 MIR302B-201ENST00000362188 73 ntBASIC1.86□□□□□ -2.11
PCIF1Q9H4Z3 SNORD1A-201ENST00000364968 72 ntBASIC1.86□□□□□ -2.11
PCIF1Q9H4Z3 RNU6-913P-201ENST00000390913 95 ntBASIC1.86□□□□□ -2.11
PCIF1Q9H4Z3 RNU6-1190P-201ENST00000410811 104 ntBASIC1.86□□□□□ -2.11
PCIF1Q9H4Z3 Y_RNA.630-201ENST00000411370 108 ntBASIC1.86□□□□□ -2.11
PCIF1Q9H4Z3 RN7SKP179-201ENST00000516126 217 ntBASIC1.86□□□□□ -2.11
PCIF1Q9H4Z3 RNU7-53P-201ENST00000516705 60 ntBASIC1.86□□□□□ -2.11
PCIF1Q9H4Z3 MIR3198-2-201ENST00000577868 80 ntBASIC1.86□□□□□ -2.11
PCIF1Q9H4Z3 MIR3914-2-201ENST00000637339 95 ntBASIC1.86□□□□□ -2.11
PCIF1Q9H4Z3 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
PCIF1Q9H4Z3 RNU7-73P-201ENST00000458743 63 ntBASIC1.85□□□□□ -2.11
PCIF1Q9H4Z3 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.85□□□□□ -2.11
PCIF1Q9H4Z3 MIR548AI-201ENST00000579940 88 ntBASIC1.85□□□□□ -2.11
PCIF1Q9H4Z3 AL096861.1-201ENST00000610899 123 ntBASIC1.85□□□□□ -2.11
PCIF1Q9H4Z3 AL137067.1-201ENST00000615933 120 ntBASIC1.85□□□□□ -2.11
PCIF1Q9H4Z3 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
PCIF1Q9H4Z3 WWP1P1-201ENST00000466609 2769 ntBASIC1.84□□□□□ -2.11
PCIF1Q9H4Z3 MIR764-201ENST00000390811 85 ntBASIC1.84□□□□□ -2.11
PCIF1Q9H4Z3 SNORA25.15-201ENST00000516487 89 ntBASIC1.84□□□□□ -2.11
PCIF1Q9H4Z3 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.84□□□□□ -2.11
PCIF1Q9H4Z3 AC024614.2-201ENST00000577584 372 ntBASIC1.84□□□□□ -2.11
PCIF1Q9H4Z3 GHRLOS.1-201ENST00000610995 70 ntBASIC1.84□□□□□ -2.11
PCIF1Q9H4Z3 AL353997.5-201ENST00000618886 171 ntBASIC1.84□□□□□ -2.11
PCIF1Q9H4Z3 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
PCIF1Q9H4Z3 AC021613.1-201ENST00000623880 111 ntBASIC1.84□□□□□ -2.11
PCIF1Q9H4Z3 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
PCIF1Q9H4Z3 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.83□□□□□ -2.12
PCIF1Q9H4Z3 RNU6-1067P-201ENST00000384752 107 ntBASIC1.83□□□□□ -2.12
PCIF1Q9H4Z3 MIRLET7F2-201ENST00000385277 83 ntBASIC1.83□□□□□ -2.12
PCIF1Q9H4Z3 AC079140.2-201ENST00000506193 142 ntBASIC1.83□□□□□ -2.12
PCIF1Q9H4Z3 MIR3192-201ENST00000584920 77 ntBASIC1.83□□□□□ -2.12
PCIF1Q9H4Z3 AC021443.1-201ENST00000604478 211 ntBASIC1.83□□□□□ -2.12
PCIF1Q9H4Z3 AC012493.3-201ENST00000604494 112 ntBASIC1.83□□□□□ -2.12
PCIF1Q9H4Z3 AL020996.3-201ENST00000606617 222 ntBASIC1.83□□□□□ -2.12
PCIF1Q9H4Z3 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.83□□□□□ -2.12
PCIF1Q9H4Z3 MIR4251-201ENST00000635819 61 ntBASIC1.83□□□□□ -2.12
PCIF1Q9H4Z3 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
PCIF1Q9H4Z3 Y_RNA.563-201ENST00000384707 108 ntBASIC1.82□□□□□ -2.12
PCIF1Q9H4Z3 SNORA26.6-201ENST00000391256 115 ntBASIC1.82□□□□□ -2.12
PCIF1Q9H4Z3 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.82□□□□□ -2.12
PCIF1Q9H4Z3 HMGN1P33-201ENST00000432945 451 ntBASIC1.82□□□□□ -2.12
PCIF1Q9H4Z3 AC027119.1-201ENST00000440877 241 ntBASIC1.82□□□□□ -2.12
PCIF1Q9H4Z3 AC008834.1-201ENST00000511612 175 ntBASIC1.82□□□□□ -2.12
PCIF1Q9H4Z3 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC1.82□□□□□ -2.12
PCIF1Q9H4Z3 AL357312.1-201ENST00000603879 298 ntBASIC1.82□□□□□ -2.12
PCIF1Q9H4Z3 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
PCIF1Q9H4Z3 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
PCIF1Q9H4Z3 MIR1263-201ENST00000408324 86 ntBASIC1.81□□□□□ -2.12
PCIF1Q9H4Z3 RNU6-735P-201ENST00000410612 107 ntBASIC1.81□□□□□ -2.12
PCIF1Q9H4Z3 snoU13.16-201ENST00000459350 104 ntBASIC1.81□□□□□ -2.12
PCIF1Q9H4Z3 SNORD33.1-201ENST00000516213 88 ntBASIC1.81□□□□□ -2.12
PCIF1Q9H4Z3 RNY4P20-201ENST00000516678 93 ntBASIC1.81□□□□□ -2.12
PCIF1Q9H4Z3 MIR3937-201ENST00000580135 106 ntBASIC1.81□□□□□ -2.12
PCIF1Q9H4Z3 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.81□□□□□ -2.12
PCIF1Q9H4Z3 AL359881.1-201ENST00000602916 267 ntBASIC1.81□□□□□ -2.12
PCIF1Q9H4Z3 MIR502-201ENST00000606349 86 ntBASIC1.81□□□□□ -2.12
PCIF1Q9H4Z3 AC025166.1-201ENST00000612411 163 ntBASIC1.81□□□□□ -2.12
PCIF1Q9H4Z3 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.81□□□□□ -2.12
PCIF1Q9H4Z3 RNU6-1290P-201ENST00000362957 109 ntBASIC1.8□□□□□ -2.12
PCIF1Q9H4Z3 RNA5SP144-201ENST00000410846 116 ntBASIC1.8□□□□□ -2.12
PCIF1Q9H4Z3 snoU13.25-201ENST00000458945 104 ntBASIC1.8□□□□□ -2.12
PCIF1Q9H4Z3 RNU7-164P-201ENST00000459221 62 ntBASIC1.8□□□□□ -2.12
PCIF1Q9H4Z3 RNU7-123P-201ENST00000515911 60 ntBASIC1.8□□□□□ -2.12
PCIF1Q9H4Z3 RNU2-35P-201ENST00000516446 142 ntBASIC1.8□□□□□ -2.12
PCIF1Q9H4Z3 MIR548AO-201ENST00000579992 96 ntBASIC1.8□□□□□ -2.12
PCIF1Q9H4Z3 MIR4305-201ENST00000583252 102 ntBASIC1.8□□□□□ -2.12
PCIF1Q9H4Z3 RNA5SP48-201ENST00000363969 126 ntBASIC1.79□□□□□ -2.12
PCIF1Q9H4Z3 RNA5SP190-201ENST00000365222 118 ntBASIC1.79□□□□□ -2.12
PCIF1Q9H4Z3 Y_RNA.353-201ENST00000365440 108 ntBASIC1.79□□□□□ -2.12
PCIF1Q9H4Z3 RNU6-1319P-201ENST00000390855 104 ntBASIC1.79□□□□□ -2.12
PCIF1Q9H4Z3 RNU6-747P-201ENST00000390928 104 ntBASIC1.79□□□□□ -2.12
PCIF1Q9H4Z3 RNU6-241P-201ENST00000391148 104 ntBASIC1.79□□□□□ -2.12
PCIF1Q9H4Z3 RNU6-177P-201ENST00000411257 104 ntBASIC1.79□□□□□ -2.12
PCIF1Q9H4Z3 RPS27P16-201ENST00000425758 201 ntBASIC1.79□□□□□ -2.12
PCIF1Q9H4Z3 MIR3683-201ENST00000580847 82 ntBASIC1.79□□□□□ -2.12
PCIF1Q9H4Z3 MIR6841-201ENST00000637129 72 ntBASIC1.79□□□□□ -2.12
PCIF1Q9H4Z3 Y_RNA.298-201ENST00000364960 107 ntBASIC1.78□□□□□ -2.12
PCIF1Q9H4Z3 RNU6-1065P-201ENST00000384513 106 ntBASIC1.78□□□□□ -2.12
PCIF1Q9H4Z3 POLR2J4-204ENST00000418424 324 ntBASIC1.78□□□□□ -2.12
PCIF1Q9H4Z3 AC009474.2-201ENST00000451383 136 ntBASIC1.78□□□□□ -2.12
PCIF1Q9H4Z3 SNORD13-201ENST00000459299 104 ntBASIC1.78□□□□□ -2.12
PCIF1Q9H4Z3 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.78□□□□□ -2.12
PCIF1Q9H4Z3 RNU6-947P-201ENST00000516264 106 ntBASIC1.78□□□□□ -2.12
PCIF1Q9H4Z3 RNU6-165P-201ENST00000517170 99 ntBASIC1.78□□□□□ -2.12
PCIF1Q9H4Z3 DNAJC19P9-201ENST00000555084 351 ntBASIC1.78□□□□□ -2.12
PCIF1Q9H4Z3 MIR6717-201ENST00000622747 73 ntBASIC1.78□□□□□ -2.12
PCIF1Q9H4Z3 U6.95-201ENST00000636931 70 ntBASIC1.78□□□□□ -2.12
PCIF1Q9H4Z3 AP000648.3-201ENST00000623539 4507 ntBASIC1.78□□□□□ -2.13
PCIF1Q9H4Z3 SNORD33-201ENST00000362761 85 ntBASIC1.77□□□□□ -2.13
PCIF1Q9H4Z3 Y_RNA.528-201ENST00000384575 108 ntBASIC1.77□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 116.5 ms