Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 SNORA28-201ENST00000606769 126 ntBASIC1.72□□□□□ -2.13
EBF3Q9H4W6 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.72□□□□□ -2.13
EBF3Q9H4W6 RNU6-766P-201ENST00000362478 107 ntBASIC1.71□□□□□ -2.14
EBF3Q9H4W6 RNU6-756P-201ENST00000383997 107 ntBASIC1.71□□□□□ -2.14
EBF3Q9H4W6 RNY4P30-201ENST00000410216 95 ntBASIC1.71□□□□□ -2.14
EBF3Q9H4W6 SNORA19.1-201ENST00000410656 129 ntBASIC1.71□□□□□ -2.14
EBF3Q9H4W6 RPL39P34-201ENST00000477141 156 ntBASIC1.71□□□□□ -2.14
EBF3Q9H4W6 RNU7-123P-201ENST00000515911 60 ntBASIC1.71□□□□□ -2.14
EBF3Q9H4W6 RNU6-94P-201ENST00000607728 107 ntBASIC1.71□□□□□ -2.14
EBF3Q9H4W6 AP001318.4-201ENST00000616637 121 ntBASIC1.71□□□□□ -2.14
EBF3Q9H4W6 AC106754.2-201ENST00000623006 233 ntBASIC1.71□□□□□ -2.14
EBF3Q9H4W6 AC091932.4-201ENST00000623386 200 ntBASIC1.71□□□□□ -2.14
EBF3Q9H4W6 RNU4-16P-201ENST00000364737 141 ntBASIC1.7□□□□□ -2.14
EBF3Q9H4W6 Y_RNA.323-201ENST00000365157 109 ntBASIC1.7□□□□□ -2.14
EBF3Q9H4W6 Y_RNA.351-201ENST00000365436 96 ntBASIC1.7□□□□□ -2.14
EBF3Q9H4W6 RNY1P6-201ENST00000384193 109 ntBASIC1.7□□□□□ -2.14
EBF3Q9H4W6 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
EBF3Q9H4W6 U8.16-201ENST00000391279 133 ntBASIC1.7□□□□□ -2.14
EBF3Q9H4W6 RN7SKP200-201ENST00000410564 320 ntBASIC1.7□□□□□ -2.14
EBF3Q9H4W6 RNA5SP100-201ENST00000410903 110 ntBASIC1.7□□□□□ -2.14
EBF3Q9H4W6 RNU6-321P-201ENST00000410912 106 ntBASIC1.7□□□□□ -2.14
EBF3Q9H4W6 RNA5SP59-201ENST00000410922 110 ntBASIC1.7□□□□□ -2.14
EBF3Q9H4W6 RPL31P63-201ENST00000422565 375 ntBASIC1.7□□□□□ -2.14
EBF3Q9H4W6 RNA5SP481-201ENST00000516814 122 ntBASIC1.7□□□□□ -2.14
EBF3Q9H4W6 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.7□□□□□ -2.14
EBF3Q9H4W6 RNA5SP437-201ENST00000517249 129 ntBASIC1.7□□□□□ -2.14
EBF3Q9H4W6 DNAJC19P9-201ENST00000555084 351 ntBASIC1.7□□□□□ -2.14
EBF3Q9H4W6 MIR4299-201ENST00000577899 72 ntBASIC1.7□□□□□ -2.14
EBF3Q9H4W6 MIR3618-201ENST00000580330 88 ntBASIC1.7□□□□□ -2.14
EBF3Q9H4W6 AC006254.2-201ENST00000603259 279 ntBASIC1.7□□□□□ -2.14
EBF3Q9H4W6 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.7□□□□□ -2.14
EBF3Q9H4W6 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.7□□□□□ -2.14
EBF3Q9H4W6 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
EBF3Q9H4W6 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
EBF3Q9H4W6 RNA5SP276-201ENST00000362580 94 ntBASIC1.69□□□□□ -2.14
EBF3Q9H4W6 RNU6-414P-201ENST00000363705 104 ntBASIC1.69□□□□□ -2.14
EBF3Q9H4W6 RNU1-133P-201ENST00000364867 167 ntBASIC1.69□□□□□ -2.14
EBF3Q9H4W6 U8.6-201ENST00000364939 135 ntBASIC1.69□□□□□ -2.14
EBF3Q9H4W6 Y_RNA.369-201ENST00000365568 117 ntBASIC1.69□□□□□ -2.14
EBF3Q9H4W6 SNORA51.5-201ENST00000384126 131 ntBASIC1.69□□□□□ -2.14
EBF3Q9H4W6 RNU7-164P-201ENST00000459221 62 ntBASIC1.69□□□□□ -2.14
EBF3Q9H4W6 RNU6-109P-201ENST00000516364 107 ntBASIC1.69□□□□□ -2.14
EBF3Q9H4W6 RNU6-184P-201ENST00000516514 107 ntBASIC1.69□□□□□ -2.14
EBF3Q9H4W6 SNORA18.7-201ENST00000516910 131 ntBASIC1.69□□□□□ -2.14
EBF3Q9H4W6 AL773524.1-201ENST00000614065 229 ntBASIC1.69□□□□□ -2.14
EBF3Q9H4W6 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.69□□□□□ -2.14
EBF3Q9H4W6 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
EBF3Q9H4W6 AL596211.1-201ENST00000569873 2277 ntBASIC1.69□□□□□ -2.14
EBF3Q9H4W6 RNU6-163P-201ENST00000384396 106 ntBASIC1.68□□□□□ -2.14
EBF3Q9H4W6 U8.17-201ENST00000391292 132 ntBASIC1.68□□□□□ -2.14
EBF3Q9H4W6 AL034345.1-201ENST00000407768 123 ntBASIC1.68□□□□□ -2.14
EBF3Q9H4W6 AC244636.1-201ENST00000421152 228 ntBASIC1.68□□□□□ -2.14
EBF3Q9H4W6 AC087499.4-201ENST00000448505 178 ntBASIC1.68□□□□□ -2.14
EBF3Q9H4W6 RNU7-95P-201ENST00000459222 64 ntBASIC1.68□□□□□ -2.14
EBF3Q9H4W6 RNU7-181P-201ENST00000517234 74 ntBASIC1.68□□□□□ -2.14
EBF3Q9H4W6 SNORD53B-201ENST00000577887 78 ntBASIC1.68□□□□□ -2.14
EBF3Q9H4W6 MIR4305-201ENST00000583252 102 ntBASIC1.68□□□□□ -2.14
EBF3Q9H4W6 AL645939.4-201ENST00000604495 135 ntBASIC1.68□□□□□ -2.14
EBF3Q9H4W6 AL359821.1-201ENST00000605519 182 ntBASIC1.68□□□□□ -2.14
EBF3Q9H4W6 AL512598.1-201ENST00000610158 273 ntBASIC1.68□□□□□ -2.14
EBF3Q9H4W6 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.68□□□□□ -2.14
EBF3Q9H4W6 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.68□□□□□ -2.14
EBF3Q9H4W6 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
EBF3Q9H4W6 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.67□□□□□ -2.14
EBF3Q9H4W6 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.67□□□□□ -2.14
EBF3Q9H4W6 MIR342-201ENST00000362212 99 ntBASIC1.67□□□□□ -2.14
EBF3Q9H4W6 RNY4P6-201ENST00000363667 96 ntBASIC1.67□□□□□ -2.14
EBF3Q9H4W6 RNU1-42P-201ENST00000364033 160 ntBASIC1.67□□□□□ -2.14
EBF3Q9H4W6 Y_RNA.226-201ENST00000364337 114 ntBASIC1.67□□□□□ -2.14
EBF3Q9H4W6 MIR488-201ENST00000365739 83 ntBASIC1.67□□□□□ -2.14
EBF3Q9H4W6 RNU6-49P-201ENST00000384256 107 ntBASIC1.67□□□□□ -2.14
EBF3Q9H4W6 RNU6-424P-201ENST00000384367 105 ntBASIC1.67□□□□□ -2.14
EBF3Q9H4W6 RNU6-1031P-201ENST00000384773 107 ntBASIC1.67□□□□□ -2.14
EBF3Q9H4W6 MIR590-201ENST00000385008 97 ntBASIC1.67□□□□□ -2.14
EBF3Q9H4W6 RNA5SP212-201ENST00000391223 107 ntBASIC1.67□□□□□ -2.14
EBF3Q9H4W6 RNU2-7P-201ENST00000410794 178 ntBASIC1.67□□□□□ -2.14
EBF3Q9H4W6 SNX2P2-201ENST00000424553 323 ntBASIC1.67□□□□□ -2.14
EBF3Q9H4W6 AC015922.2-201ENST00000435593 184 ntBASIC1.67□□□□□ -2.14
EBF3Q9H4W6 TRMT112P2-201ENST00000512910 132 ntBASIC1.67□□□□□ -2.14
EBF3Q9H4W6 RNA5SP168-201ENST00000516642 112 ntBASIC1.67□□□□□ -2.14
EBF3Q9H4W6 AC068339.1-201ENST00000526965 141 ntBASIC1.67□□□□□ -2.14
EBF3Q9H4W6 MIR5009-201ENST00000578736 100 ntBASIC1.67□□□□□ -2.14
EBF3Q9H4W6 AC027279.3-201ENST00000625055 122 ntBASIC1.67□□□□□ -2.14
EBF3Q9H4W6 AL589743.1-201ENST00000551932 2712 ntBASIC1.66□□□□□ -2.14
EBF3Q9H4W6 Y_RNA.213-201ENST00000364178 111 ntBASIC1.66□□□□□ -2.14
EBF3Q9H4W6 RNU6-1131P-201ENST00000364955 107 ntBASIC1.66□□□□□ -2.14
EBF3Q9H4W6 SNORA27-201ENST00000384323 126 ntBASIC1.66□□□□□ -2.14
EBF3Q9H4W6 MIR548D2-201ENST00000384955 97 ntBASIC1.66□□□□□ -2.14
EBF3Q9H4W6 MIR1302-5-201ENST00000408164 150 ntBASIC1.66□□□□□ -2.14
EBF3Q9H4W6 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.66□□□□□ -2.14
EBF3Q9H4W6 RPL23AP6-201ENST00000446637 472 ntBASIC1.66□□□□□ -2.14
EBF3Q9H4W6 RNU7-45P-201ENST00000459460 63 ntBASIC1.66□□□□□ -2.14
EBF3Q9H4W6 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.66□□□□□ -2.14
EBF3Q9H4W6 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.65□□□□□ -2.15
EBF3Q9H4W6 Y_RNA.49-201ENST00000362714 112 ntBASIC1.65□□□□□ -2.15
EBF3Q9H4W6 Y_RNA.241-201ENST00000364470 117 ntBASIC1.65□□□□□ -2.15
EBF3Q9H4W6 RNU6-60P-201ENST00000364792 103 ntBASIC1.65□□□□□ -2.15
EBF3Q9H4W6 SNORD38C-201ENST00000384381 69 ntBASIC1.65□□□□□ -2.15
EBF3Q9H4W6 RNU6-360P-201ENST00000390944 104 ntBASIC1.65□□□□□ -2.15
EBF3Q9H4W6 RNA5SP144-201ENST00000410846 116 ntBASIC1.65□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 237.4 ms