Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 AC022254.1-201ENST00000567857 235 ntBASIC2.11□□□□□ -2.07
NKX2-4Q9H2Z4 MIR3683-201ENST00000580847 82 ntBASIC2.11□□□□□ -2.07
NKX2-4Q9H2Z4 MIR8081-201ENST00000611533 95 ntBASIC2.11□□□□□ -2.07
NKX2-4Q9H2Z4 AC021613.1-201ENST00000623880 111 ntBASIC2.11□□□□□ -2.07
NKX2-4Q9H2Z4 UGP2-230ENST00000626380 276 ntTSL 5 BASIC2.11□□□□□ -2.07
NKX2-4Q9H2Z4 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.11□□□□□ -2.07
NKX2-4Q9H2Z4 AC080100.1-201ENST00000624239 5356 ntBASIC2.1□□□□□ -2.07
NKX2-4Q9H2Z4 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
NKX2-4Q9H2Z4 Y_RNA.213-201ENST00000364178 111 ntBASIC2.1□□□□□ -2.07
NKX2-4Q9H2Z4 MIR570-201ENST00000384917 97 ntBASIC2.1□□□□□ -2.07
NKX2-4Q9H2Z4 MIR759-201ENST00000390224 91 ntBASIC2.1□□□□□ -2.07
NKX2-4Q9H2Z4 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
NKX2-4Q9H2Z4 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC2.1□□□□□ -2.07
NKX2-4Q9H2Z4 Y_RNA.709-201ENST00000516952 92 ntBASIC2.1□□□□□ -2.07
NKX2-4Q9H2Z4 MIR4299-201ENST00000577899 72 ntBASIC2.1□□□□□ -2.07
NKX2-4Q9H2Z4 MIR4791-201ENST00000607666 84 ntBASIC2.1□□□□□ -2.07
NKX2-4Q9H2Z4 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC2.1□□□□□ -2.07
NKX2-4Q9H2Z4 Y_RNA.198-201ENST00000364013 98 ntBASIC2.09□□□□□ -2.07
NKX2-4Q9H2Z4 SNORA24-201ENST00000384096 131 ntBASIC2.09□□□□□ -2.07
NKX2-4Q9H2Z4 RNU6-880P-201ENST00000384526 107 ntBASIC2.09□□□□□ -2.07
NKX2-4Q9H2Z4 Y_RNA.537-201ENST00000384626 109 ntBASIC2.09□□□□□ -2.07
NKX2-4Q9H2Z4 MIR17-201ENST00000385012 84 ntBASIC2.09□□□□□ -2.07
NKX2-4Q9H2Z4 AL451046.2-201ENST00000403074 277 ntBASIC2.09□□□□□ -2.07
NKX2-4Q9H2Z4 snoU13.18-201ENST00000459483 104 ntBASIC2.09□□□□□ -2.07
NKX2-4Q9H2Z4 RNU7-123P-201ENST00000515911 60 ntBASIC2.09□□□□□ -2.07
NKX2-4Q9H2Z4 RNU6-589P-201ENST00000516485 107 ntBASIC2.09□□□□□ -2.07
NKX2-4Q9H2Z4 SNORA31.11-201ENST00000516528 139 ntBASIC2.09□□□□□ -2.07
NKX2-4Q9H2Z4 AL137847.3-201ENST00000611521 109 ntBASIC2.09□□□□□ -2.07
NKX2-4Q9H2Z4 MIR8074-201ENST00000615081 81 ntBASIC2.09□□□□□ -2.07
NKX2-4Q9H2Z4 AC084768.2-201ENST00000622736 221 ntBASIC2.09□□□□□ -2.07
NKX2-4Q9H2Z4 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.08□□□□□ -2.08
NKX2-4Q9H2Z4 Y_RNA.224-201ENST00000364308 111 ntBASIC2.08□□□□□ -2.08
NKX2-4Q9H2Z4 SNORA51.10-201ENST00000384418 136 ntBASIC2.08□□□□□ -2.08
NKX2-4Q9H2Z4 MIR520C-201ENST00000385005 87 ntBASIC2.08□□□□□ -2.08
NKX2-4Q9H2Z4 RNA5SP261-201ENST00000410536 106 ntBASIC2.08□□□□□ -2.08
NKX2-4Q9H2Z4 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC2.08□□□□□ -2.08
NKX2-4Q9H2Z4 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC2.08□□□□□ -2.08
NKX2-4Q9H2Z4 MIR3152-201ENST00000579801 74 ntBASIC2.08□□□□□ -2.08
NKX2-4Q9H2Z4 MIR5089-201ENST00000580047 84 ntBASIC2.08□□□□□ -2.08
NKX2-4Q9H2Z4 MIR4764-201ENST00000580680 88 ntBASIC2.08□□□□□ -2.08
NKX2-4Q9H2Z4 MIR4303-201ENST00000581299 66 ntBASIC2.08□□□□□ -2.08
NKX2-4Q9H2Z4 BX248123.2-201ENST00000606318 124 ntBASIC2.08□□□□□ -2.08
NKX2-4Q9H2Z4 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.08□□□□□ -2.08
NKX2-4Q9H2Z4 Y_RNA.35-201ENST00000362601 101 ntBASIC2.07□□□□□ -2.08
NKX2-4Q9H2Z4 MIR653-201ENST00000385279 96 ntBASIC2.07□□□□□ -2.08
NKX2-4Q9H2Z4 RNY4P18-201ENST00000391107 89 ntBASIC2.07□□□□□ -2.08
NKX2-4Q9H2Z4 AL022718.1-201ENST00000412004 84 ntBASIC2.07□□□□□ -2.08
NKX2-4Q9H2Z4 RNU7-73P-201ENST00000458743 63 ntBASIC2.07□□□□□ -2.08
NKX2-4Q9H2Z4 RNU7-45P-201ENST00000459460 63 ntBASIC2.07□□□□□ -2.08
NKX2-4Q9H2Z4 SNORA31.4-201ENST00000516049 129 ntBASIC2.07□□□□□ -2.08
NKX2-4Q9H2Z4 RNA5SP144-201ENST00000410846 116 ntBASIC2.06□□□□□ -2.08
NKX2-4Q9H2Z4 RNU6-893P-201ENST00000458841 100 ntBASIC2.06□□□□□ -2.08
NKX2-4Q9H2Z4 RNU2-35P-201ENST00000516446 142 ntBASIC2.06□□□□□ -2.08
NKX2-4Q9H2Z4 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.06□□□□□ -2.08
NKX2-4Q9H2Z4 DNAJC19P9-201ENST00000555084 351 ntBASIC2.06□□□□□ -2.08
NKX2-4Q9H2Z4 AC008133.2-201ENST00000624540 351 ntBASIC2.06□□□□□ -2.08
NKX2-4Q9H2Z4 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC2.06□□□□□ -2.08
NKX2-4Q9H2Z4 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.06□□□□□ -2.08
NKX2-4Q9H2Z4 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
NKX2-4Q9H2Z4 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.05□□□□□ -2.08
NKX2-4Q9H2Z4 MIR9-3-201ENST00000385084 90 ntBASIC2.05□□□□□ -2.08
NKX2-4Q9H2Z4 RNU6-1319P-201ENST00000390855 104 ntBASIC2.05□□□□□ -2.08
NKX2-4Q9H2Z4 RNU6-747P-201ENST00000390928 104 ntBASIC2.05□□□□□ -2.08
NKX2-4Q9H2Z4 RNU6-241P-201ENST00000391148 104 ntBASIC2.05□□□□□ -2.08
NKX2-4Q9H2Z4 RNU6-177P-201ENST00000411257 104 ntBASIC2.05□□□□□ -2.08
NKX2-4Q9H2Z4 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.05□□□□□ -2.08
NKX2-4Q9H2Z4 SNORA22-201ENST00000383907 134 ntBASIC2.04□□□□□ -2.08
NKX2-4Q9H2Z4 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.04□□□□□ -2.08
NKX2-4Q9H2Z4 snoU13.16-201ENST00000459350 104 ntBASIC2.04□□□□□ -2.08
NKX2-4Q9H2Z4 AC007012.1-201ENST00000567192 175 ntBASIC2.04□□□□□ -2.08
NKX2-4Q9H2Z4 SNORA77B-201ENST00000578179 125 ntBASIC2.04□□□□□ -2.08
NKX2-4Q9H2Z4 AL020996.3-201ENST00000606617 222 ntBASIC2.04□□□□□ -2.08
NKX2-4Q9H2Z4 SNORA63.4-201ENST00000362763 126 ntBASIC2.03□□□□□ -2.08
NKX2-4Q9H2Z4 RNY4P6-201ENST00000363667 96 ntBASIC2.03□□□□□ -2.08
NKX2-4Q9H2Z4 RNU6-913P-201ENST00000390913 95 ntBASIC2.03□□□□□ -2.08
NKX2-4Q9H2Z4 AC063976.4-201ENST00000421971 163 ntBASIC2.03□□□□□ -2.08
NKX2-4Q9H2Z4 PDCD5P2-201ENST00000507570 312 ntBASIC2.03□□□□□ -2.08
NKX2-4Q9H2Z4 RNU6-412P-201ENST00000516434 106 ntBASIC2.03□□□□□ -2.08
NKX2-4Q9H2Z4 RNU6-922P-201ENST00000516753 99 ntBASIC2.03□□□□□ -2.08
NKX2-4Q9H2Z4 AC022523.2-201ENST00000561045 150 ntBASIC2.03□□□□□ -2.08
NKX2-4Q9H2Z4 AC015688.6-201ENST00000577737 104 ntBASIC2.03□□□□□ -2.08
NKX2-4Q9H2Z4 MIR6895-201ENST00000613497 78 ntBASIC2.03□□□□□ -2.08
NKX2-4Q9H2Z4 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC2.03□□□□□ -2.08
NKX2-4Q9H2Z4 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.03□□□□□ -2.09
NKX2-4Q9H2Z4 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
NKX2-4Q9H2Z4 RNU6-250P-201ENST00000516958 103 ntBASIC2.02□□□□□ -2.09
NKX2-4Q9H2Z4 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.02□□□□□ -2.09
NKX2-4Q9H2Z4 MIR3163-201ENST00000581592 73 ntBASIC2.02□□□□□ -2.09
NKX2-4Q9H2Z4 AL513534.2-201ENST00000603836 250 ntBASIC2.02□□□□□ -2.09
NKX2-4Q9H2Z4 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.02□□□□□ -2.09
NKX2-4Q9H2Z4 MIRLET7G-201ENST00000362280 84 ntBASIC2.01□□□□□ -2.09
NKX2-4Q9H2Z4 SNORA22.1-201ENST00000362701 134 ntBASIC2.01□□□□□ -2.09
NKX2-4Q9H2Z4 RNU6-1104P-201ENST00000384723 104 ntBASIC2.01□□□□□ -2.09
NKX2-4Q9H2Z4 MIR7-2-201ENST00000384970 110 ntBASIC2.01□□□□□ -2.09
NKX2-4Q9H2Z4 RNU6-1190P-201ENST00000410811 104 ntBASIC2.01□□□□□ -2.09
NKX2-4Q9H2Z4 POLR2J4-204ENST00000418424 324 ntBASIC2.01□□□□□ -2.09
NKX2-4Q9H2Z4 AL512326.2-201ENST00000426359 151 ntBASIC2.01□□□□□ -2.09
NKX2-4Q9H2Z4 SNORD111.1-201ENST00000516421 86 ntBASIC2.01□□□□□ -2.09
NKX2-4Q9H2Z4 SNORA44.1-201ENST00000517031 108 ntBASIC2.01□□□□□ -2.09
NKX2-4Q9H2Z4 IGHVII-40-1-201ENST00000517316 58 ntBASIC2.01□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 202.2 ms