Protein–RNA interactions for Protein: Q9H2S5

RNF39, RING finger protein 39, humanhuman

Predictions only

Length 420 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF39Q9H2S5 RN7SL274P-201ENST00000492268 272 ntBASIC4.16□□□□□ -1.74
RNF39Q9H2S5 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC4.16□□□□□ -1.74
RNF39Q9H2S5 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.16□□□□□ -1.74
RNF39Q9H2S5 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.16□□□□□ -1.74
RNF39Q9H2S5 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.16□□□□□ -1.74
RNF39Q9H2S5 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.15□□□□□ -1.74
RNF39Q9H2S5 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.75
RNF39Q9H2S5 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
RNF39Q9H2S5 RNU6V-201ENST00000384105 107 ntBASIC4.15□□□□□ -1.75
RNF39Q9H2S5 SNORA5A-201ENST00000384111 134 ntBASIC4.15□□□□□ -1.75
RNF39Q9H2S5 MIR653-201ENST00000385279 96 ntBASIC4.15□□□□□ -1.75
RNF39Q9H2S5 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
RNF39Q9H2S5 RNU6-220P-201ENST00000390919 107 ntBASIC4.15□□□□□ -1.75
RNF39Q9H2S5 MIR1257-201ENST00000408490 117 ntBASIC4.15□□□□□ -1.75
RNF39Q9H2S5 AL591424.2-201ENST00000617023 128 ntBASIC4.15□□□□□ -1.75
RNF39Q9H2S5 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.75
RNF39Q9H2S5 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.15□□□□□ -1.75
RNF39Q9H2S5 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
RNF39Q9H2S5 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
RNF39Q9H2S5 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
RNF39Q9H2S5 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
RNF39Q9H2S5 RNA5SP245-201ENST00000364239 121 ntBASIC4.14□□□□□ -1.75
RNF39Q9H2S5 RNU6-721P-201ENST00000410155 105 ntBASIC4.14□□□□□ -1.75
RNF39Q9H2S5 MIR3192-201ENST00000584920 77 ntBASIC4.14□□□□□ -1.75
RNF39Q9H2S5 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.14□□□□□ -1.75
RNF39Q9H2S5 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
RNF39Q9H2S5 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
RNF39Q9H2S5 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
RNF39Q9H2S5 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
RNF39Q9H2S5 MIR513A2-201ENST00000385249 127 ntBASIC4.13□□□□□ -1.75
RNF39Q9H2S5 AL035423.1-201ENST00000420331 213 ntBASIC4.13□□□□□ -1.75
RNF39Q9H2S5 SNORA71B-202ENST00000439232 272 ntBASIC4.13□□□□□ -1.75
RNF39Q9H2S5 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC4.13□□□□□ -1.75
RNF39Q9H2S5 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
RNF39Q9H2S5 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
RNF39Q9H2S5 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
RNF39Q9H2S5 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
RNF39Q9H2S5 RNU6-525P-201ENST00000363685 104 ntBASIC4.12□□□□□ -1.75
RNF39Q9H2S5 MIR597-201ENST00000384968 97 ntBASIC4.12□□□□□ -1.75
RNF39Q9H2S5 MIR449B-201ENST00000384995 97 ntBASIC4.12□□□□□ -1.75
RNF39Q9H2S5 MIR617-201ENST00000385030 97 ntBASIC4.12□□□□□ -1.75
RNF39Q9H2S5 RNU6-1246P-201ENST00000391064 107 ntBASIC4.12□□□□□ -1.75
RNF39Q9H2S5 AC244505.6-201ENST00000452829 130 ntBASIC4.12□□□□□ -1.75
RNF39Q9H2S5 snoU13.13-201ENST00000458842 104 ntBASIC4.12□□□□□ -1.75
RNF39Q9H2S5 AC026403.1-201ENST00000518938 295 ntBASIC4.12□□□□□ -1.75
RNF39Q9H2S5 MIR5187-201ENST00000583479 76 ntBASIC4.12□□□□□ -1.75
RNF39Q9H2S5 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
RNF39Q9H2S5 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
RNF39Q9H2S5 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC4.11□□□□□ -1.75
RNF39Q9H2S5 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
RNF39Q9H2S5 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
RNF39Q9H2S5 RNA5SP139-201ENST00000364340 117 ntBASIC4.11□□□□□ -1.75
RNF39Q9H2S5 RNU6-742P-201ENST00000365289 107 ntBASIC4.11□□□□□ -1.75
RNF39Q9H2S5 RNU1-138P-201ENST00000384093 164 ntBASIC4.11□□□□□ -1.75
RNF39Q9H2S5 AL513328.1-201ENST00000446460 224 ntBASIC4.11□□□□□ -1.75
RNF39Q9H2S5 RNA5SP208-201ENST00000516156 78 ntBASIC4.11□□□□□ -1.75
RNF39Q9H2S5 RNA5SP94-201ENST00000516917 108 ntBASIC4.11□□□□□ -1.75
RNF39Q9H2S5 MIR3922-201ENST00000585192 84 ntBASIC4.11□□□□□ -1.75
RNF39Q9H2S5 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
RNF39Q9H2S5 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
RNF39Q9H2S5 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC4.11□□□□□ -1.75
RNF39Q9H2S5 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.11□□□□□ -1.75
RNF39Q9H2S5 AL356274.2-201ENST00000624379 3752 ntBASIC4.1□□□□□ -1.75
RNF39Q9H2S5 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
RNF39Q9H2S5 RNU6-535P-201ENST00000384722 107 ntBASIC4.1□□□□□ -1.75
RNF39Q9H2S5 RNU6-172P-201ENST00000411000 93 ntBASIC4.1□□□□□ -1.75
RNF39Q9H2S5 RPS27P29-201ENST00000463110 252 ntBASIC4.1□□□□□ -1.75
RNF39Q9H2S5 SNRPGP19-201ENST00000603826 189 ntBASIC4.1□□□□□ -1.75
RNF39Q9H2S5 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
RNF39Q9H2S5 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.09□□□□□ -1.75
RNF39Q9H2S5 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
RNF39Q9H2S5 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
RNF39Q9H2S5 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.09□□□□□ -1.75
RNF39Q9H2S5 RNA5SP119-201ENST00000362715 117 ntBASIC4.09□□□□□ -1.75
RNF39Q9H2S5 Y_RNA.125-201ENST00000363371 111 ntBASIC4.09□□□□□ -1.75
RNF39Q9H2S5 MIR7-3-201ENST00000384898 110 ntBASIC4.09□□□□□ -1.75
RNF39Q9H2S5 MIR6516-201ENST00000630554 81 ntBASIC4.09□□□□□ -1.75
RNF39Q9H2S5 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
RNF39Q9H2S5 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
RNF39Q9H2S5 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
RNF39Q9H2S5 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
RNF39Q9H2S5 RNU6-1123P-201ENST00000362347 106 ntBASIC4.08□□□□□ -1.76
RNF39Q9H2S5 SNORD9-201ENST00000362566 104 ntBASIC4.08□□□□□ -1.76
RNF39Q9H2S5 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
RNF39Q9H2S5 IDE-202ENST00000371581 4480 ntTSL 2 BASIC4.08□□□□□ -1.76
RNF39Q9H2S5 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
RNF39Q9H2S5 RNU11-3P-201ENST00000391111 133 ntBASIC4.08□□□□□ -1.76
RNF39Q9H2S5 RNVU1-2-201ENST00000516326 135 ntBASIC4.08□□□□□ -1.76
RNF39Q9H2S5 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
RNF39Q9H2S5 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC4.08□□□□□ -1.76
RNF39Q9H2S5 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC4.07□□□□□ -1.76
RNF39Q9H2S5 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
RNF39Q9H2S5 SNORA25.8-201ENST00000364831 128 ntBASIC4.07□□□□□ -1.76
RNF39Q9H2S5 RNU6-133P-201ENST00000383989 107 ntBASIC4.07□□□□□ -1.76
RNF39Q9H2S5 RNU7-26P-201ENST00000458980 63 ntBASIC4.07□□□□□ -1.76
RNF39Q9H2S5 DEFB122-202ENST00000569013 197 ntBASIC4.07□□□□□ -1.76
RNF39Q9H2S5 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
RNF39Q9H2S5 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
RNF39Q9H2S5 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
RNF39Q9H2S5 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms