Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 RNU6-1054P-201ENST00000411293 104 ntBASIC2.18□□□□□ -2.06
TRAIPQ9BWF2 SNORA31.2-201ENST00000516019 134 ntBASIC2.18□□□□□ -2.06
TRAIPQ9BWF2 RNA5SP364-201ENST00000516938 78 ntBASIC2.18□□□□□ -2.06
TRAIPQ9BWF2 MIR3121-201ENST00000579680 77 ntBASIC2.18□□□□□ -2.06
TRAIPQ9BWF2 RNU4-16P-201ENST00000364737 141 ntBASIC2.17□□□□□ -2.06
TRAIPQ9BWF2 RNA5SP160-201ENST00000364866 120 ntBASIC2.17□□□□□ -2.06
TRAIPQ9BWF2 RNA5SP138-201ENST00000365098 114 ntBASIC2.17□□□□□ -2.06
TRAIPQ9BWF2 Y_RNA.586-201ENST00000391146 98 ntBASIC2.17□□□□□ -2.06
TRAIPQ9BWF2 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.17□□□□□ -2.06
TRAIPQ9BWF2 RNA5SP338-201ENST00000410495 85 ntBASIC2.17□□□□□ -2.06
TRAIPQ9BWF2 RNU4-61P-201ENST00000411243 107 ntBASIC2.17□□□□□ -2.06
TRAIPQ9BWF2 MIR2115-201ENST00000516657 100 ntBASIC2.17□□□□□ -2.06
TRAIPQ9BWF2 Y_RNA.783-201ENST00000613546 102 ntBASIC2.17□□□□□ -2.06
TRAIPQ9BWF2 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC2.16□□□□□ -2.06
TRAIPQ9BWF2 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
TRAIPQ9BWF2 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
TRAIPQ9BWF2 AL022718.1-201ENST00000412004 84 ntBASIC2.16□□□□□ -2.06
TRAIPQ9BWF2 RNU6-240P-201ENST00000516098 97 ntBASIC2.16□□□□□ -2.06
TRAIPQ9BWF2 RNU6-789P-201ENST00000517105 102 ntBASIC2.16□□□□□ -2.06
TRAIPQ9BWF2 MIR6845-201ENST00000613182 61 ntBASIC2.16□□□□□ -2.06
TRAIPQ9BWF2 MIR6717-201ENST00000622747 73 ntBASIC2.16□□□□□ -2.06
TRAIPQ9BWF2 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
TRAIPQ9BWF2 Y_RNA.114-201ENST00000363265 113 ntBASIC2.15□□□□□ -2.07
TRAIPQ9BWF2 RNU7-45P-201ENST00000459460 63 ntBASIC2.15□□□□□ -2.07
TRAIPQ9BWF2 AC048334.1-201ENST00000477975 159 ntBASIC2.15□□□□□ -2.07
TRAIPQ9BWF2 RN7SL274P-201ENST00000492268 272 ntBASIC2.15□□□□□ -2.07
TRAIPQ9BWF2 MIR5089-201ENST00000580047 84 ntBASIC2.15□□□□□ -2.07
TRAIPQ9BWF2 AP000753.3-201ENST00000604083 169 ntBASIC2.15□□□□□ -2.07
TRAIPQ9BWF2 AC012493.3-201ENST00000604494 112 ntBASIC2.15□□□□□ -2.07
TRAIPQ9BWF2 RNU6-349P-201ENST00000362402 107 ntBASIC2.14□□□□□ -2.07
TRAIPQ9BWF2 AC021443.1-201ENST00000604478 211 ntBASIC2.14□□□□□ -2.07
TRAIPQ9BWF2 MIR8055-201ENST00000610739 97 ntBASIC2.14□□□□□ -2.07
TRAIPQ9BWF2 Z97988.1-201ENST00000637697 135 ntBASIC2.14□□□□□ -2.07
TRAIPQ9BWF2 Y_RNA.651-201ENST00000459380 103 ntBASIC2.13□□□□□ -2.07
TRAIPQ9BWF2 RNU6-548P-201ENST00000517083 115 ntBASIC2.13□□□□□ -2.07
TRAIPQ9BWF2 AL137067.1-201ENST00000615933 120 ntBASIC2.13□□□□□ -2.07
TRAIPQ9BWF2 MIR583-201ENST00000384846 75 ntBASIC2.12□□□□□ -2.07
TRAIPQ9BWF2 MIR222-201ENST00000384992 110 ntBASIC2.12□□□□□ -2.07
TRAIPQ9BWF2 HMGN1P33-201ENST00000432945 451 ntBASIC2.12□□□□□ -2.07
TRAIPQ9BWF2 AL603825.1-201ENST00000438481 80 ntBASIC2.12□□□□□ -2.07
TRAIPQ9BWF2 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC2.12□□□□□ -2.07
TRAIPQ9BWF2 SNORA22.1-201ENST00000362701 134 ntBASIC2.11□□□□□ -2.07
TRAIPQ9BWF2 SNORA70.22-201ENST00000517160 124 ntBASIC2.11□□□□□ -2.07
TRAIPQ9BWF2 MIR3683-201ENST00000580847 82 ntBASIC2.11□□□□□ -2.07
TRAIPQ9BWF2 AL353997.5-201ENST00000618886 171 ntBASIC2.11□□□□□ -2.07
TRAIPQ9BWF2 AC132825.6-201ENST00000638861 357 ntBASIC2.11□□□□□ -2.07
TRAIPQ9BWF2 RNU6-508P-201ENST00000363231 103 ntBASIC2.1□□□□□ -2.07
TRAIPQ9BWF2 Y_RNA.330-201ENST00000365230 109 ntBASIC2.1□□□□□ -2.07
TRAIPQ9BWF2 Y_RNA.430-201ENST00000384081 110 ntBASIC2.1□□□□□ -2.07
TRAIPQ9BWF2 RNU6-910P-201ENST00000390844 107 ntBASIC2.1□□□□□ -2.07
TRAIPQ9BWF2 MRPL35P3-201ENST00000421557 364 ntBASIC2.1□□□□□ -2.07
TRAIPQ9BWF2 AL591704.2-201ENST00000421658 181 ntBASIC2.1□□□□□ -2.07
TRAIPQ9BWF2 AL445685.2-201ENST00000422551 342 ntBASIC2.1□□□□□ -2.07
TRAIPQ9BWF2 AL158147.1-201ENST00000443970 75 ntBASIC2.1□□□□□ -2.07
TRAIPQ9BWF2 RNU6-971P-201ENST00000516920 106 ntBASIC2.1□□□□□ -2.07
TRAIPQ9BWF2 MIR4305-201ENST00000583252 102 ntBASIC2.1□□□□□ -2.07
TRAIPQ9BWF2 HSPE1P19-201ENST00000603327 295 ntBASIC2.1□□□□□ -2.07
TRAIPQ9BWF2 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.1□□□□□ -2.07
TRAIPQ9BWF2 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
TRAIPQ9BWF2 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
TRAIPQ9BWF2 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.09□□□□□ -2.07
TRAIPQ9BWF2 Y_RNA.294-201ENST00000364916 102 ntBASIC2.09□□□□□ -2.07
TRAIPQ9BWF2 SNORA80D-201ENST00000384488 135 ntBASIC2.09□□□□□ -2.07
TRAIPQ9BWF2 RNU6-1190P-201ENST00000410811 104 ntBASIC2.09□□□□□ -2.07
TRAIPQ9BWF2 RNU7-164P-201ENST00000459221 62 ntBASIC2.09□□□□□ -2.07
TRAIPQ9BWF2 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.09□□□□□ -2.07
TRAIPQ9BWF2 MIR3910-1-201ENST00000580936 111 ntBASIC2.09□□□□□ -2.07
TRAIPQ9BWF2 PRELID3BP2-201ENST00000605362 201 ntBASIC2.09□□□□□ -2.07
TRAIPQ9BWF2 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.08
TRAIPQ9BWF2 MIR4255-201ENST00000579351 72 ntBASIC2.08□□□□□ -2.08
TRAIPQ9BWF2 Y_RNA.366-201ENST00000365540 102 ntBASIC2.07□□□□□ -2.08
TRAIPQ9BWF2 SNORA26.6-201ENST00000391256 115 ntBASIC2.07□□□□□ -2.08
TRAIPQ9BWF2 snoU13.25-201ENST00000458945 104 ntBASIC2.07□□□□□ -2.08
TRAIPQ9BWF2 RNA5SP99-201ENST00000364020 114 ntBASIC2.06□□□□□ -2.08
TRAIPQ9BWF2 MIR759-201ENST00000390224 91 ntBASIC2.06□□□□□ -2.08
TRAIPQ9BWF2 SNORA40.18-201ENST00000391200 128 ntBASIC2.06□□□□□ -2.08
TRAIPQ9BWF2 SUMO2P12-201ENST00000405924 140 ntBASIC2.06□□□□□ -2.08
TRAIPQ9BWF2 MIR1185-1-201ENST00000408598 86 ntBASIC2.06□□□□□ -2.08
TRAIPQ9BWF2 RNA5SP144-201ENST00000410846 116 ntBASIC2.06□□□□□ -2.08
TRAIPQ9BWF2 RNU6-602P-201ENST00000411155 105 ntBASIC2.06□□□□□ -2.08
TRAIPQ9BWF2 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC2.06□□□□□ -2.08
TRAIPQ9BWF2 RNU7-113P-201ENST00000459273 62 ntBASIC2.06□□□□□ -2.08
TRAIPQ9BWF2 RNU6-1061P-201ENST00000516530 99 ntBASIC2.06□□□□□ -2.08
TRAIPQ9BWF2 AP003716.2-201ENST00000528260 108 ntBASIC2.06□□□□□ -2.08
TRAIPQ9BWF2 MIR4264-201ENST00000583520 66 ntBASIC2.06□□□□□ -2.08
TRAIPQ9BWF2 AP000942.3-201ENST00000603702 160 ntBASIC2.06□□□□□ -2.08
TRAIPQ9BWF2 SEPT14P17-201ENST00000617978 177 ntBASIC2.06□□□□□ -2.08
TRAIPQ9BWF2 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.06□□□□□ -2.08
TRAIPQ9BWF2 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
TRAIPQ9BWF2 RNU6-235P-201ENST00000362644 107 ntBASIC2.05□□□□□ -2.08
TRAIPQ9BWF2 MT-TN-201ENST00000387400 73 ntBASIC2.05□□□□□ -2.08
TRAIPQ9BWF2 RN7SKP19-201ENST00000516016 252 ntBASIC2.05□□□□□ -2.08
TRAIPQ9BWF2 RN7SKP179-201ENST00000516126 217 ntBASIC2.05□□□□□ -2.08
TRAIPQ9BWF2 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.05□□□□□ -2.08
TRAIPQ9BWF2 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.05□□□□□ -2.08
TRAIPQ9BWF2 RNU6-80P-201ENST00000384195 107 ntBASIC2.04□□□□□ -2.08
TRAIPQ9BWF2 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
TRAIPQ9BWF2 MIR6516-201ENST00000630554 81 ntBASIC2.04□□□□□ -2.08
TRAIPQ9BWF2 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC2.03□□□□□ -2.08
TRAIPQ9BWF2 RPS29P23-201ENST00000458635 123 ntBASIC2.03□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 174.6 ms